Si-ware systems Neospectra User manual

NeoSpectra - Scanner Quick Start Guide

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NeoSpectra - Scanner Quick Start Guide

Contents

About NeoSpectra-Scanner ..................................................................................................2

About this guide....................................................................................................................2

1Box Components ...........................................................................................................3

2Scanner User Interface..................................................................................................4

2.1 Scan and Power Buttons.........................................................................................4

2.2 Scanner USB port...................................................................................................5

2.3 Scanner Screen Panel............................................................................................6

2.3.1 Stored scans area............................................................................................6

2.3.2 Battery status area...........................................................................................6

2.3.3 Bluetooth status area.......................................................................................7

2.3.4 Messages area................................................................................................7

3Powering Up the Scanner..............................................................................................8

3.1 Charger / Battery Powered Operation.....................................................................8

3.2 Battery Replacement ..............................................................................................8

4Sample Interfacing.........................................................................................................9

4.1 Sample above the Scanner.....................................................................................9

4.2 Point & Shoot........................................................................................................10

4.3 Sample below the Scanner...................................................................................10

5Scanner Modes of Operation .......................................................................................11

5.1 Standalone Operation Mode.................................................................................11

5.2 Bluetooth Connected Operation Mode..................................................................11

5.3 Scanner Power States in Different Operating Modes............................................11

5.4 Taking Measurements in Different Operating Modes ............................................12

6Mobile Applications Overview ......................................................................................13

6.1 Android Application Overview ...............................................................................13

6.1.1 Connecting to the Scanner.............................................................................13

6.1.2 Taking Measurements ...................................................................................14

Accessing the Scans Saved on the Scanner...................................................................16

6.1.3 Configuring the Scanner................................................................................17

6.1.4 Firmware Update...........................................................................................18

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6.1.5 Restore Default Firmware..............................................................................19

6.2 IOS Application Overview .....................................................................................19

6.2.1 Sign-in to the application................................................................................20

6.2.2 Connecting to the Scanner.............................................................................20

6.2.3 Taking Measurements ...................................................................................21

6.2.4 Charts Tab.....................................................................................................22

6.2.5 Data tab.........................................................................................................23

6.2.6 Scanner Memory ...........................................................................................25

6.2.7 Scanner Settings ...........................................................................................26

6.2.8 Firmware Update...........................................................................................28

6.2.9 Restore Default Firmware..............................................................................28

7Scanner Error Codes...................................................................................................29

8Disclaimers..................................................................................................................30

9Precautions..................................................................................................................30

About NeoSpectra-Scanner

NeoSpectra-Scanner is a portable and handheld spectral sensing device that can be used in

a wide variety of material sensing applications. It shines light that interacts with the sample

to be measured, collects its diffuse reflectance, and generates NIR spectra that corresponds

to the spectral response of the material in the spectral range (1,350 - 2,500 nm). The

scanner enables the development of in-field material analysis applications in various

industries.

About this guide

If you are using NeoSpectra-Scanner for the first time, this guide is your reference on what

the different parts of NeoSpectra-Scanner are, what they are used for, and how to use them.

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1 Box Components

A. NeoSpectra - Scanner: The main spectra collection device with NeoSpectra sensor

inside (Figure 1).

B. Scanner Cover: It is a protection for the optical window that should be placed on top

of the scanner when it is not being used. To do this, just place the cover on top of the

scanner, and it will be magnetically fixed. The cover also includes the white reference

material for background measurements. To avoid losing the cover, make sure to use

the lanyard to attach the cover to the scanner.

C. Scanner Sample Holder: It is provided to facilitate the measurement of some types

of samples like soil, feed, powders,...etc, however the scanner can be used without it.

It is magnetically attached to the scanner cover and needs to be detached from it

when used (Figure 2). The sample holder can be magnetically attached and aligned

on the scanner top surface to hold the sample during scanning.

D. Scanner power adapter: An AC / DC adapter dedicated to NeoSpectra - Scanner

with a USB connection. The adapter shouldn’t be used with other USB devices due

to its high DC voltage output. It also comes with a power plug converter for users

located in the USA. Refer to section 3 for more details about the adapter usage.

A. NeoSpectra - Scanner

C. Scanner Sample Holder

B. Scanner Cover

Magnetic contacts

White reference material

Figure 1 NeoSpectra –Scanner Box Components

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Scanner Cover

Scanner Sample Holder

Figure 2 Attaching the sample holder to the scanner cover

2 Scanner User Interface

2.1 Scan and Power Buttons

The scanner main functionality is controlled by the scan and power buttons as summarized

in the table below.

Power Button Functionality

Scan Button Functionality

1. A short press turns on the scanner, if

it’s powered off.

2. A long press turns the scanner off.

3. With the scanner powered on, a short

press on the power button will re-

initiate the Bluetooth advertising (refer

to section 5.3 for more details)

1. A short press is used to take material

scans.

2. A long press identifies the scan as a

background reference scan.

Refer to section 5.1 and 5.4 for more details

about the usage of the Scan button.

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Power

Button

Scan

Button

Figure 3 Scanner power and scan buttons

2.2 Scanner USB port

The scanner USB port is used for battery charging only. It is shown in Figure 4. To start the

battery charging, plug in the adapter in the USB port and power on the scanner. Note that

charging will not start if the scanner is powered off. USB user data transfer is not

supported in the Alpha samples.

USB Port

Figure 4 Scanner USB charging port

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2.3 Scanner Screen Panel

The scanner screen panel is shown in Figure 5. It has 4 main areas: the messages area, the

BLE status area, the stored scans area and the battery status area.

Stored Scans BLE Status

Battery Status Messages Area

Figure 5 Scanner screen panel overview

2.3.1 Stored scans area

The number shown indicates the number of stored scans on the scanner local storage out of

999 scans.

2.3.2 Battery status area

The battery status area shows the remaining battery capacity and indicates whether the

charger is connected or not as illustrated in Figure 6 a & b.

Figure 6 Battery status area with and without the charger connected

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2.3.3 Bluetooth status area

The Bluetooth status area shows the state of the BLE connectivity of the device. It is either

advertising, connected or disconnected (Figure 7 a, b, c). The details of the 3 states are

described in section 5.3.

Figure 7 BLE status area during different connection states

2.3.4 Messages area

The messages area displays all the user interface data about the current scan. It shows

whether the scan being taken is a white reference scan or a material scan and it also shows

a progress bar for the scanning process Figure 8 (a) and (b). It indicates when the scan is

completed successfully Figure 8 (c) or if there was an error with the last scan Figure 8 (d). A

detailed list of error messages is shown in section 7.

Figure 8 Messages area during reference and material scans

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3 Powering Up the Scanner

3.1 Charger / Battery Powered Operation

NeoSpectra - Scanner is powered by two user replaceable 18650 batteries with 3400 mAh

nominal capacity. The batteries are readily installed in the device for out-of-the-box

operation. The scanner also comes with a dedicated 15 V / 2.4 A AC / DC adapter capable

of powering the scanner to charge and scan simultaneously irrespective of the battery

status.

The scanner can still be charged using a standard 5 V USB charger, however in that case

scanning during charging will only be available if the battery is sufficiently charged. It’s

important to note that the power adapter provided with the scanner must not be used with

other standard USB devices due to its high voltage output, otherwise these devices will be

damaged.

3.2 Battery Replacement

The scanner batteries can be replaced by unscrewing the 4 screws in the battery cover at

the bottom of the scanner below the rubber pads to remove the battery cover. The process is

illustrates in Figure 9. It’s important to note that when the battery is replaced or removed

from the device the charger must be connected to the scanner before powering it up again

for the first time after the batteries are placed back.

Figure 9 Battery replacement process

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4 Sample Interfacing

The scanner industrial design allows for multiple usage models in terms of sample

interfacing. The sample can be placed on top of the scanner or the scanner can be placed

on top of the sample or it can be used in a point and shoot mode. The different sample

interfacing schemes are illustrated in the following sections. In all cases, the user must

ensure that the sample is in contact with the scanner window.

4.1 Sample above the Scanner

●Set the scanner on a flat surface.

●Place the sample on top of the scanner with the provided sample holder (Figure 10 a)

or directly without it using any NIR-transparent container (Figure 10 b).

Figure 10 Sample on top of scanner mode

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4.2 Point & Shoot

●Hold scanner in hand.

●Point and shoot at the sample while ensuring that the scanner window is pressed

against the sample.

Figure 11 Scanner used in point-and-shoot mode

4.3 Sample below the Scanner

●Place the sample on a flat surface.

●Set the scanner on top of the sample.

Figure 12 Scanner on top of sample mode

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5 Scanner Modes of Operation

The scanner has 2 main modes of operation; the Standalone operation mode and the

Bluetooth connected operation mode. The standalone mode can be useful for users with a

large number of consecutive scans to be captured with the same settings either in the field

or in the lab. The Bluetooth connected mode allows for more flexibility in configuring the

scanner parameters and visualizing the captured spectra as they are recorded. The two

modes of operation are detailed in the following sections.

5.1 Standalone Operation Mode

In this mode, the scanner is operated without being connected to a mobile phone. The user

can take scans normally, either background or material scans based on pre-configured scan

parameters that are set and saved earlier using the mobile application. The scans will be

stored on the scanner internal storage and can be retrieved from the mobile application

when connected using Bluetooth.

5.2 Bluetooth Connected Operation Mode

In this mode, the scanner is fully controlled from the mobile application, which enables the

user to capture spectra and view the results immediately. It also allows the user to configure

all the sensor settings and scan time and to store it on the scanner memory to be used later.

Moreover, it allows the user to retrieve and visualize the stored scans taken by the scanner

in standalone mode.

5.3 Scanner Power States in Different Operating Modes

The scanner has four main power states related to the operating mode and establishing a

connection with a Bluetooth device: Power Off, Standby - Advertising, Standby - Connected,

Standby - Disconnected. The power and scan buttons controls the scanner transitions

between these states as detailed below.

1. Power Off: A long press on the power button powers off the scanner. This is a low

power sleep state in which the scanner is turned off to save the battery. It’s

recommended to keep the device in this state as long as it’s not being used to avoid

draining the battery.

2. Standby - Advertising: This is a transitional state between the Bluetooth connected

and standalone modes. A short press on the power button turns the scanner on and

it starts advertising for nearby Bluetooth devices ready to connect. The scanner

keeps advertising for 2 minutes and turns off the advertising afterwards to save

power, if no devices attempt to establish a connection within this period. A short

press on the power button will initiate the advertising again.

3. Standby - Connected: This is the main state during the Bluetooth connected

operation mode. In this state, the scanner is powered on and connected to a mobile

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device via Bluetooth ready to take scans either from the mobile application or the

scan button.

4. Standby - Disconnected: This is the main state during the standalone operation

mode. In this state, the scanner is powered on but not connected to a mobile device

and also the advertising is turned off. This state is entered after advertising for 2

minutes with no connection or if the user presses the scan button before the scanner

is connected to a Bluetooth device right after power up.

5.4 Taking Measurements in Different Operating Modes

Standalone Mode

Bluetooth Connected Mode

1. In this mode the scanner will use the

stored device configuration (either the

defaults or those pre-configured using

the mobile application).

2. With the scanner powered on and

without a previously stored reference

scan, start with a background

reference scan before doing a

material scan.

3. To run a reference scan, attach the

white background reference cover to

the scanner.

4. Long press the scan button to identify

the reading as a background

reference scan. The stored scans

counter on the display will be

incremented by one scan.

5. To run a material scan, place the

material to be scanned in contact with

the scanner window as detailed in

section “Sample Interfacing”.

6. Short press the scan button to take

the reading. Again the stored scans

counter will be incremented by one

scan.

7. The stored scans can be retrieved on

the mobile application either for

viewing or transferring to a PC for

further processing.

1. Start the NeoSpectra - Scanner

application and power on the scanner.

2. Press the “Connect” button on the

screen to connect the scanner to a

mobile device.

3. If no background reading has been

previously taken, start with a

background reference scan before

doing a material scan.

4. To run a reference scan, attach the

white background reference cover to

the scanner.

5. On the measurements screen, set the

scan time and press the “Background”

button in the application.

6. To run a material scan, place the

material to be scanned in contact with

the scanner window as detailed in

section “Sample Interfacing”.

7. On the measurements screen, choose

the scan time (must be the same as

the reference scan or lower), and

press the “Scan” button in the

application.

8. Measured spectra can be visualized in

the application.

9. The results are stored on the mobile

device and can be either viewed in the

application or transferred to a PC for

further processing.

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Refer to section “Mobile Applications

Overview”for more details about how to set

the scan parameters from the mobile

application and how to retrieve the stored

scans from the scanner.

Refer to section 6 for detailed illustrations of

the application usage.

6 Mobile Applications Overview

The mobile applications allow the user to easily exercise the different functionalities of the

scanner. This includes monitoring the scanner status indicators, configuring the

measurements parameters, capturing spectra, accessing the spectra stored on the scanner

and visualizing the measured spectra. The different functions are described in the following

sections for both the Android and the IOS applications.

6.1 Android Application Overview

Si-ware Systems provides an open source Android application to interface with the scanner

and demonstrate its features. The app is available for download from si-ware.com, and to

request the app source code please contact [email protected]m.

6.1.1 Connecting to the Scanner

The home screen of the application is shown in Figure 13 (a). The first step is to connect to a

nearby scanner. This is done by pressing on the “Connect” button on the home screen. The

application displays the list of available devices identified by their serial numbers as shown

in Figure 13 (b). To connect to a specific scanner, press the “Connect” button beside the

corresponding serial number. Once connected the application retrieves the scanner status

indicators. This includes the device serial number, battery status, number of stored scans

and the firmware version of the scanner as shown in Figure 13 (c). From this screen the user

can configure the device, take measurements or access the stored scans on the scan during

previous standalone operation sessions as will be shown in the following sections.

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a. Home Screen of the

Application

b. Choosing the scanner to

establish a connection

c. Control panel with a

connected scanner

Figure 13 Connecting to the scanner from the mobile application

6.1.2 Taking Measurements

To start capturing spectra, press on the “Take Measurements” button of the connected

scanner screen. The measurements screen is shown in Figure 14 (a). From this screen the

user can execute different functions:

1. Perform a certain number of scans, by setting the required number of scans in the

text box.

2. Set the scan time. Note that it must be the same scan time for both the material

scans and the corresponding reference scan.

3. Perform background (reference) scan by pressing on “Background” button.

4. Perform sample scans by press on “Scan” button.

5. Visualize the captured spectra by pressing the “VIEW” button at the top left of the

screen.

6. On-going scans can be stopped by pressing on “Stop” button while taking multiple

sample scans.

7. Additionally, on the results viewing screen shown in Figure 14 (d), the user can load

previously measured spectra or save the current displayed ones to the mobile device

storage.

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a. The main measurements screen

b. Taking a reference scan

c. Taking a material scan

d. Visualizing the measured spectra

Figure 14 Taking measurements screen in the application

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Accessing the Scans Saved on the Scanner

In order to retrieve the scans history saved on the scanner’s internal memory, press on the

dotted menu in the control panel screen. Then press on “Retrieve Scans” item as shown in

Figure 15. A progress indicator will show up stating how many measurements are being

retrieved and the live progress of getting them. The retrieved scans are saved in

“DCIM/NeoSpectra” folder.

A total of 999 scans can be saved on the scanner’s internal memory. In order to measure /

save more, clearing history must be done to free up space. Clearing history can be done by

pressing on the dotted menu in the control panel screen then pressing on “Clear History”

item as shown in Figure 15.

Figure 15 Retrieving/Clearing the stored scans on the device

The clearing and retrieval actions are executed on all the scans stored on the device

together i.e. no individual scans can be selected for clearing or retrieval. This feature will be

implemented in future versions of the applications.

The scans are stored on the scanner with an incremental naming convention function of the

scan order. This will lead to overwriting the previously retrieved scans on the mobile storage

folder “DCIM/NeoSpectra”. To avoid this, it’s recommended to rename the retrieved scans

as soon as they are copied to the mobile phone storage.

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6.1.3 Configuring the Scanner

Detailed configuration and settings of the scanner can be accessed from the configuration

screen shown in Figure 16. These configurations are described below in details.

Group

Item

Description

Measurement

Parameters

Optical Gain

Settings

This field is selected to choose between various

optical gain setups that was previously measured and

adjusted

Data Display

Enable Linear

Interpolation

Enables the linear interpolation feature to get a

constant wavenumber vector across all scanners

Number of data

points

The number of wavenumber vector points (valid only

in case linear interpolation feature is enabled)

FFT Settings

Apodization

Function

Selects the used window for apodization (boxcar,

Gaussian, Happ-Genzel, Lorenz)

Number of FFT

Points

Select the number of points used during FFT function

(8K, 16K and 32K points)

Advanced

Settings

Add New Optical

Gain Settings

Add new optical gain setup to be used during

scanning

Clear Optical Gain

Settings

Clear all the saved optical gain setups done by user

Wavelength

Correction

Perform wavelength correction routine.

Storing All Settings

Save all the wavelength correction parameters on

flash.

Restore Default

Settings

Restore the factory settings for wavelength correction

parameters.

Save/Restore

Preferences

Scan Time

View the value of scan time to be saved with the

configuration preferences when pressing “Save

Scanner Preferences”.

Save Scanner

Preferences

Save all the configuration preferences selected by

user on the scanner. This makes it the default settings

on scanner in standby mode.

Restore Scanner

Preferences

Restore the factory preferences saved on scanner

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a. Part1 of scanner configuration

parameters

b. Part2 of scanner configuration

parameters

Figure 16 Configuring the scanner parameters

6.1.4 Firmware Update

Updating the firmware of the scanner can be done through the mobile app. The firmware

itself is supplied by Si-Ware Systems.

Here is the procedure than needs to be done in order to perform FW update:

1. To install an update, the scanner should be plugged to the charger in advance, and

the battery is at 100%.

2. Download the new firmware bin file named “image.bin” and place it inside

“Download” folder.

3. Press on the dotted menu in the control panel screen. Then press on “Firmware

Update” item as shown in Figure 17.

4. A message will be shown asking to pair with your scanner but with a new ID that

starts with “OTA_..”, please press “Pair”.

5. A progress window will be shown to indicate the progress of writing the new firmware

to the scanner.

6. Once the firmware update is complete, the scanner will be turned off automatically.

And the mobile app is disconnected. Please close the app and re-open it.

7. Press on the power button of the scanner to power it on.

8. Sometimes the OS caches the ID for each device with specific MAC address, so

sometimes it will show the ID that starts with “OTA_..” for a couple of times before the

OS refreshes the ID and it will be shown normally “NS-Scanner_...” again.

9. But even during these couple of times, the scanner will be completely operational

and can be used with the mobile app perfectly.

10. If any error occurred during the FW update process, please restart the scanner by

powering it off then powering it back on.

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6.1.5 Restore Default Firmware

Restoring the default firmware of the scanner can be done through the mobile app. This

action brings the scanner FW back to the one originally was flashed by Si-Ware Systems

during the production of this unit.

Here is the procedure than needs to be done in order to perform Restore Default FW:

1. To restore the default FW, the scanner should be plugged to the charger in advance,

and the battery is at 100%.

2. Press on the dotted menu in the control panel screen. Then press on “Restore

Default FW” item as shown in Figure 17.

3. A progress window will be shown to indicate the progress of restoring the default

firmware to the scanner.

4. Once the firmware update is complete, the scanner will be turned off automatically.

And the mobile app is disconnected. Please close the app and re-open it.

5. Press on the power button of the scanner to power it on.

Figure 17 Performing FW update or Restore default FW

6.2 IOS Application Overview

Si-ware Systems provides an open source IOS application to interface with the scanner and

demonstrate its features. The app “NeoSpectra Collect”is available for download from

Apple’s app store, and to request the app source code please contact support@si-

ware.com.

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6.2.1 Sign-in to the application

The first screen of the app as shown in Figure 18 is the sign in view, where you can sign in

with the username and password provided by Si-Ware Systems.

In case you need credentials, please contact sup[email protected].

Figure 18 Sign in view

6.2.2 Connecting to the Scanner

After signing in, user be redirected to the connect screen of the application as shown in

Figure 19 (a). The first step is to connect to a nearby scanner. This is done by pressing on

the “Connect” button on the intro screen. The application displays a list of available devices

identified by their serial numbers as shown in Figure 19 (b). To connect to a specific

scanner, tap the selected scanner from the list. Once the scanner is connected the

application moves to the home view, as shown in Figure 19 (c), which shows the scanner

status indicators. This includes the device serial number, battery status, number of stored

scans and the firmware version of the scanner. From this screen there are several tabs to

switch between them; Home, Collect, Charts, and Data.

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