Penguin Computing MLB 2203 User manual

Motherboard
User Manual
MLB 2203/2213
Sep. 2006 (Revision B)
P/N: 1230B0026701

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All rights, including copyright, in the content of this manual are owned or controlled by IESC and
protected by the Taiwan and international copyright act.
No one may, transmit, adapt, assign, compile, rent, sale, change, copy, reproduce, distribute, publish,
display, broadcast, or use in any way the content of this manual, in whole or in part, for any other
purpose whatsoever without the prior written permission of IESC.
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All product names or brands mentioned herein are the trademarks of IESC, its subsidiaries or other
respective owners in Taiwan, United States and other countries.
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This manual provides the information in relation to the set-up and installation of the product herein.
Nothing herein may be construed as granting any right or license relating to any intellectual property
rights of this manual or product. Unless otherwise provided in the Purchase and Sale Agreement for
this product, manufacturer and distributor of this product will not be liable whatsoever relating to the
distribution and/or use of this product. In addition, manufacturer and distributor of this product hereby
specifically disclaim any express or implied warranties of merchantability, fitness for a particular
purpose, or non-infringement of third party rights in connection with this product.
Manufacturer of this product may have the right to change specifications and product descriptions at
any time without notice.

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About This Manual ........................................................................................................................................i
Conventions..................................................................................................................................................i
Safety Symbols............................................................................................................................................ii
Safety Precautions......................................................................................................................................iii
Operation Safety.....................................................................................................................................iii
Electrical Safety .....................................................................................................................................iii
Battery Replacement Safety...................................................................................................................iv
Laser Peripherals or Devices Safety........................................................................................................v
Intended Application Uses.......................................................................................................................v
Site Selection...........................................................................................................................................v
Tools Required ........................................................................................................................................v
Regulatory and Integration Information.....................................................................................................vi
Regulatory Compliance Identification Numbers....................................................................................vi
Product Regulatory Compliance ............................................................................................................vi
1Introduction........................................................................................................................................1-1
1.1 Audience Assumptions.................................................................................................................1-1
1.2 Manual Organization....................................................................................................................1-1
1.3 Product Features...........................................................................................................................1-2
1.4 Motherboard Layout.....................................................................................................................1-4
1.4.1 Connectors and Component Locations.................................................................................1-4
1.4.2 Back Panel Connectors.........................................................................................................1-6
1.4.3 System LED Information .....................................................................................................1-6
1.4.4 Port 80 LEDs Information....................................................................................................1-7
2Hardware Operations ........................................................................................................................2-1
2.1 Before You Start...........................................................................................................................2-1
2.2 Screw Holes..................................................................................................................................2-2
2.3 Battery..........................................................................................................................................2-3
2.3.1 To remove the battery...........................................................................................................2-4
2.3.2 To install the battery.............................................................................................................2-4
2.4 Processor ......................................................................................................................................2-5
2.4.1 To remove the heat sink........................................................................................................2-6
2.4.2 To install the heat sink..........................................................................................................2-6
2.4.3 To remove the processor.......................................................................................................2-7
2.4.4 To install the processor.........................................................................................................2-8
2.4.5 To remove the heat sink socket ............................................................................................2-9
2.4.6 To install the heat sink socket...............................................................................................2-9
2.5 System Memory .........................................................................................................................2-10
2.5.1 DIMM Population ..............................................................................................................2-10
2.5.2 To remove a DIMM............................................................................................................2-13

2.5.3 To install a DIMM..............................................................................................................2-14
2.6 System Configuration Jumper....................................................................................................2-15
3Connectors and Jumper.....................................................................................................................3-1
3.1 Power Connectors (J8, J6)............................................................................................................3-1
3.1.1 Main Power Connector (J8) .................................................................................................3-1
3.1.2 Processor Power Connector (J6) ..........................................................................................3-2
3.2 Front Panel IDE Connector (J24).................................................................................................3-3
3.3 Floppy Connector (J45)................................................................................................................3-5
3.4 Chassis Intrusion Connector (J27)................................................................................................3-6
3.5 Front Panel VGA Connector (J68) ...............................................................................................3-7
3.6 D-sub VGA Port (J61)..................................................................................................................3-8
3.7 Serial Port (J62)............................................................................................................................3-9
3.8 Keyboard and Mouse Ports (J60, J59)........................................................................................3-10
3.9 Rear Dual USB Port (J58)..........................................................................................................3-12
3.10 Front Panel USB Connector (J19)..............................................................................................3-13
3.11 I2C (SMBus) Signal Connector for PSU (J20)...........................................................................3-14
3.12 Two Dual NIC Connectors (RJ45) (J56, J57).............................................................................3-15
3.13 Management Port (RJ45) (J75) ..................................................................................................3-17
3.14 Fan Board Connector (J1) ..........................................................................................................3-18
3.15 Mini-SAS Connectors (J69, J70, J71, J72).................................................................................3-19
3.16 LCM Connector (Optional) (J73)...............................................................................................3-20
3.17 Internal USB Port for USB Floppy (J67)...................................................................................3-21
3.18 System Configuration Jumper Setting (J54)...............................................................................3-22
4BIOS Setup .........................................................................................................................................4-1
4.1 BIOS Setup Utility.......................................................................................................................4-1
4.2 Entering the BIOS Setup Utility...................................................................................................4-2
4.3 Keyboard Command Bar..............................................................................................................4-3
4.4 BIOS Updates...............................................................................................................................4-5
4.4.1 BIOS Requirements..............................................................................................................4-5
4.4.2 ROM Flash...........................................................................................................................4-5
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Figure 1-1 Motherboard Overview....................................................................................................1-2
Figure 1-2 Connectors and Component Locations............................................................................1-4
Figure 1-3 Back Panel Connectors....................................................................................................1-6
Figure 1-4 Port 80 LEDs...................................................................................................................1-7
Figure 2-1 Screws Placement............................................................................................................2-2
Figure 2-2 Battery Location..............................................................................................................2-3
Figure 2-3 Pulling the Battery out of the Holder...............................................................................2-4
Figure 2-4 Putting the Battery into the Holder..................................................................................2-4
Figure 2-5 Processor Location ..........................................................................................................2-5
Figure 2-6 Pulling up the Heat Sink..................................................................................................2-6

Figure 2-7 Opening the Load Plate ...................................................................................................2-7
Figure 2-8 Lifting the Processor out of the Socket............................................................................2-7
Figure 2-9 Closing the Load Plate.....................................................................................................2-7
Figure 2-10 Placing on the PnP Cap..................................................................................................2-8
Figure 2-11 Aiming the Golden Corner at the Socket.......................................................................2-8
Figure 2-12 Removing the Heat Sink Base Socket...........................................................................2-9
Figure 2-13 Lifting up the Heat Sink Socket.....................................................................................2-9
Figure 2-14 System Memory Location............................................................................................2-10
Figure 2-15 Lifting the DIMM out of the Socket............................................................................2-13
Figure 2-16 Pressing the Retaining Clips Outward.........................................................................2-14
Figure 2-17 Inserting the DIMM into the Socket............................................................................2-14
Figure 2-18 System Configuration Jumper Location......................................................................2-15
Figure 3-1 Main Power Connector....................................................................................................3-1
Figure 3-2 Processor Power Connector.............................................................................................3-2
Figure 3-3 Front Panel IDE Connector .............................................................................................3-3
Figure 3-4 Floppy Connector............................................................................................................3-5
Figure 3-5 Chassis Intrusion Connector............................................................................................3-6
Figure 3-6 Front Panel VGA Connector............................................................................................3-7
Figure 3-7 D-sub VGA Port ..............................................................................................................3-8
Figure 3-8 Serial Port........................................................................................................................3-9
Figure 3-9 Keyboard Port................................................................................................................3-10
Figure 3-10 Mouse Port...................................................................................................................3-11
Figure 3-11 Rear Dual USB Port.....................................................................................................3-12
Figure 3-12 Front Panel USB Connector ........................................................................................3-13
Figure 3-13 I2C (SMBus) Signal Connector for PSU......................................................................3-14
Figure 3-14 Dual NIC Connector (RJ45)........................................................................................3-15
Figure 3-15 Management Port (RJ45).............................................................................................3-17
Figure 3-16 Fan Board Connector...................................................................................................3-18
Figure 3-17 Mini-SAS Connector...................................................................................................3-19
Figure 3-18 LCM Connector...........................................................................................................3-20
Figure 3-19 Internal USB Port for USB Floppy..............................................................................3-21
Figure 3-20 System Configuration Jumper .....................................................................................3-22
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Table 1-1 Introduction of the Manual................................................................................................1-1
Table 1-2 Product Features................................................................................................................1-2
Table 1-3 LED Information...............................................................................................................1-6
Table 1-4 Code Information ..............................................................................................................1-8
Table 1-5 Boot Block Initialization Code Checkpoints.....................................................................1-8
Table 1-6 Bootblock Recovery Code Checkpoints............................................................................1-9
Table 1-7 POST Code Information..................................................................................................1-10
Table 1-8 DIM Code Checkpoints...................................................................................................1-13
Table 1-9 ACPI Runtime Checkpoints............................................................................................1-13
Table 1-10 Beep Codes....................................................................................................................1-13

Table 1-11 Troubleshooting BIOS Beep Codes...............................................................................1-14
Table 2-1 DIMM Installation Option 1 ...........................................................................................2-11
Table 2-2 DIMM Installation Option 2 ...........................................................................................2-12
Table 3-1 Main Power Connector Pin Definition..............................................................................3-2
Table 3-2 Processor Power Connector Pin Definition.......................................................................3-2
Table 3-3 Front Panel IDE Connector Pin Definition .......................................................................3-3
Table 3-4 Floppy Connector Pin Definition......................................................................................3-5
Table 3-5 Chassis Intrusion Connector Pin Definition......................................................................3-6
Table 3-6 Front Panel VGA Connector Pin Definition......................................................................3-7
Table 3-7 D-sub VGA Port Pin Definition ........................................................................................3-8
Table 3-8 Serial Port Pin Definition..................................................................................................3-9
Table 3-9 Keyboard Port Pin Definition..........................................................................................3-10
Table 3-10 Mouse Port Pin Definition.............................................................................................3-11
Table 3-11 Rear Dual USB Port Pin Definition...............................................................................3-12
Table 3-12 Front Panel USB Connector Pin Definition ..................................................................3-13
Table 3-13 I2C (SMBus) Signal Connector for PSU Pin Definition ...............................................3-14
Table 3-14 Dual NIC Connector (RJ45) Pin Definition..................................................................3-15
Table 3-15 Management Port (RJ45) Pin Definition.......................................................................3-17
Table 3-16 Fan Board Connector Pin Definition.............................................................................3-18
Table 3-17 Mini-SAS Connector Pin Definition.............................................................................3-19
Table 3-18 LCM Connector Pin Definition.....................................................................................3-20
Table 3-19 Internal USB Port for USB Floppy Pin Definition........................................................3-21
Table 3-20 System Configuration Jumper Function........................................................................3-22
Table 4-1 BIOS Setup Utility Screen Description.............................................................................4-2
Table 4-2 Keyboard Command Bar Description...............................................................................4-3
Table 4-3 BIOS Requirements Description.......................................................................................4-5

About This Manual
About This Manual
Conventions
Safety Precautions
Regulatory and Integration Information

About This Manual
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To make sure that you perform certain tasks properly, take note of the following symbols used
throughout this manual.
Warning: Information to prevent injury to yourself when trying to complete a task.
Caution: Information to prevent damage to the components when trying to complete
a task.
Important: Information that you must follow to complete a task.
Note: Tips and information to aid in completing a task.

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1230B0026701 ii
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Before troubleshooting, you must be familiar with the safety information listed below. In order to avoid
any potential hazards, the following symbols may be placed on some components of the server.
The shape and the color of symbols shown below are mainly for your reference. Please take the actual
shipment as standard.
Indicates the potential hazard of energy circuits or electric shock. To reduce the risk of
injury from electric hazards, do not open this enclosure.
Warning: Any surface or area of the equipment marked with this symbol indicates the
presence of electric shock hazards. The enclosed area contains no operator serviceable
parts.
Indicates the potential hazard of electric shock. The enclosed area contains no user of
field serviceable parts. Do not open for any reason.
Warning: To reduce the risk of injury from electric shock hazards, do not open this
enclosure.
Indicates the presence of a hot surface or hot component.
Warning: To reduce the risk of injury from a hot component, allow the surface to co
o
before touching it.
Any RJ45 receptacle marked with this symbol indicates a network interface connection
.
Warning: To reduce the risk of electric shock, fire, or damage to the equipment, do no
t
plug telephone or telecommunications connectors into this receptacle.
This symbol, on power supplies or systems, indicates that the equipment is supplied
by multiple sources of power.
Warning: To reduce the risk of injury from electric shock, remove all power cords to
completely disconnect power from the system.
Weight in kg
Weight in lb
This symbol indicates that the component exceeds the recommended weight for one
individual to handle safely.
Warning: To reduce the risk of personal injury or damage to the equipment, observe
local occupational health and safety requirements and guidelines for manual material
handling.

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Observe the following safety precautions when you are connecting or disconnecting any device.
Regarding the standards of workstation regulations, do not place the server in the visual
field of the user, because of the glossy front of the case.
The product is non-consumer product and for profession technical person used only.
Operation Safety
Any operation on this server must be conducted by certified or experienced engineers.
Before operating your server, carefully read all the manuals included with the server package.
Before using the server, make sure that all cables are correctly connected and power cables are not
damaged. If any damage is detected, contact your dealer as soon as possible.
To avoid short circuits, keep paper clips, screws, and staples away from connectors, slots, sockets
and circuitry.
Before opening the chassis panels, make sure all power cables are unplugged.
Avoid dust, humidity, and extreme temperatures, place the server on a stable surface.
If the power supply is broken, do not try to fix it by yourself. Contact an authorized dealer.
It is recommended that you wear gloves when assembling or dissembling the server to protect
from cuts and scrapes.
When the server is powered on, heat sinks and the surfaces of certain IC devices may be hot. Do
not touch them. Check whether the fans are functioning properly.
Electrical Safety
Before installing or removing signal cables, ensure that the power cables for the system unit and
all attached devices are unplugged.
To prevent electric shock hazard, disconnect the power cable from the electrical outlet before
relocating the system.
When adding or removing any additional devices to or from the system, ensure that the power
cables for those devices are unplugged before the signal cables are connected. If possible,
disconnect all power cables from the existing system before you add a device.
Use one hand, when possible, to connect or disconnect signal cables to prevent a possible shock
from touching two surfaces with different electrical potentials.

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This product is equipped with a three-wire power cable and plug for user safety. Use the power
cable with a properly grounded electrical outlet to avoid electric shock.
Motherboards, adapters, and disk drives are sensitive to static electricity discharge. These devices are
wrapped in antistatic bags to prevent this damage. Take the following precautions:
If you have an antistatic wrist strap available, use it while handling the device.
Do not remove the device from the antistatic bag until you are ready to install the device in the
system unit.
With the device still in its antistatic bag, touch it to a metal frame of the system.
Grasp cards and boards by the edges. Hold drives by the frame. Avoid touching the solder joints
or pins.
If you need to lay the device down while it is out of the antistatic bag. Lay it on the antistatic bag.
Before picking it up again, touch the antistatic bag and the metal frame of the system unit at the
same time.
Handle the devices carefully to prevent permanent damage.
Battery Replacement Safety
This server is provided with an internal Lithium battery or battery pack. There is a danger of explosion
and risk of personal injury if the battery is incorrectly replaced or mistreated.
For more information about battery replacement or proper disposal, contact an authorized reseller or your
authorized service provider.
This server contains an internal Lithium Manganese Dioxide, or a Vanadium Pentoxide, or an
alkaline battery pack. There is risk of fire and burns if the battery pack is not handled
properly. To reduce the risk of personal injury:
Do not attempt to recharge the battery.
Do not expose to temperatures higher than 70°C.
Do not disassemble, crush, puncture, shorten external contacts, or dispose in fire or water
.
Replace only with the spare parts designated for this product.
Batteries should not be littered along with the general household waste. Please use the public
collection system or return them to the supplier.

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Laser Peripherals or Devices Safety
To avoid risk of radiation exposure and/or personal injury:
Do not open the enclosure of any laser peripheral or device.
Laser peripherals or devices have are not user serviceable.
Return to manufacturer for servicing.
Intended Application Uses
This product was evaluated as Information Technology Equipment (ITE), which may be installed in
offices, schools, computer rooms, and similar commercial type locations. The suitability of this product
for other product categories and environments (such as medical, industrial, residential, alarm systems,
and test equipment), other than an ITE application, may require further evaluation.
Site Selection
The system is designed to operate in a typical office environment. Choose a site that is:
Clean, dry, and free of airborne particles (other than normal room dust).
Well-ventilated and away from sources of heat including direct sunlight and radiators.
Away from sources of vibration or physical shock.
Isolated from strong electromagnetic fields produced by electrical devices.
In regions that are susceptible to electrical storms, we recommend you plug your system into a
surge suppresser and disconnect telecommunication lines to your modem during an electrical
storm.
Provided with a properly grounded wall outlet.
Provided with sufficient space to access the power supply cord(s), because they serve as the
product's main power.
Tools Required
A cross screwdriver or a flat screwdriver is needed to install or remove the components in the server.

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Regulatory Compliance Identification Numbers
For the purpose of regulatory compliance certifications and identification, this motherboard is assigned a
serial number. This server serial number can be found on the product label, along with the required
approval markings and information. When requesting certification information for this product, always
refer to this serial number. This serial number should not be confused with the marketing name or model
number.
Product Regulatory Compliance
Product Safety Compliance
The motherboard complies with the following safety requirements:
IEC 60950-1 Safety of Information Technology Equipment
EN 60950-1 Safety of Information Technology Equipment Including Electrical Business
Equipment, European Committee for Electrotechnical Standardization
(CENELEC)
UL 60950-1 Safety of Information Technology Equipment
UL 94 Tests for Flammability of Plastic Materials for Parts in Devices & Appliances
GB4943 Safety of Information Technology Equipment
Worldwide Safety approvals can be supplied according to the requirements from Marketing or Customer.
Product EMC Compliance
This product has been tested and verified to comply with the following electromagnetic compatibility
(EMC) regulations.
Communications Commission Notice
Part 15 of the Federal Communications Commission (FCC) Rules and Regulations has established Radio
Frequency (RF) emission limits to provide an interference-free radio frequency spectrum. Many
electronic devices, including computers, generate RF energy incidental to their intended function and are,
therefore, covered by these rules. These rules place computers and related peripheral devices into two
classes, A and B, depending upon their intended installation. Class A devices are those that may
reasonably be expected to be installed in a business or commercial environment. Class B devices are
those that may reasonably be expected to be installed in a residential environment (for example, personal
computers). The FCC requires devices in both classes to bear a label indicating the interference potential
of the device as well as additional operating instructions for the user.
The rating label on the device shows which class (A or B) the equipment falls into. Class A devices do

About This Manual
1230B0026701 vii
not have an FCC logo or FCC ID on the label. Class B devices have an FCC logo or FCC ID on the label.
Once the class of the device is determined, refer to the following corresponding statement.
Class A Equipment
This equipment has been tested and found to comply with the limits for a Class A digital device,
pursuant to Part 15 of the FCC Rules. These limits are designed to provide reasonable protection against
harmful interference when the equipment is operated in a commercial environment. This equipment
generates, uses, and can radiate radio frequency energy and, if not installed and used in accordance with
the instructions, may cause harmful interference to radio communications. Operation of this equipment
in a residential area is likely to cause harmful interference, in which case the user will be required to
correct the interference at personal expense.
Declaration of Conformity for Products Marked with the FCC Logo—United States Only
This device complies with Part 15 of the FCC Rules Operation and is subject to the following two
conditions: (1) this device may not cause harmful interference, and (2) this device must accept any
interference received, including interference that may cause undesired operation.
For questions regarding your product, please contact the supplier.
To identify this product, refer to the Part, Series, or Model number found on the product.
European Union Notice
Products with the CE Marking comply with both the EMC Directive (89/336/EEC) and the Low-Voltage
Directive (73/23/EEC) issued by the Commission of the European Community.
Compliance with these directives implies conformity to the following European Norms (in brackets are
the equivalent international standards):
EN55022 (CISPR 22) Electromagnetic Interference
EN55024 (IEC61000-4-2,3,4,5,6,8,11) Electromagnetic Immunity
EN61000-3-2 (IEC61000-3-2) Power Line Harmonics
EN61000-3-3 (IEC61000-3-3) Power Line Flicker
EN60950 (IEC950) Product Safety

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1230B0026701 viii
Canadian Notice (Avis Canadien)
Class A Equipment
Japanese Notice
Taiwanese Notice

Chapter 1
Introduction
Audience Assumptions
Manual Organization
Product Features
Motherboard Layout

Introduction
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This manual assumes that you are a service technician or network administrator familiar with computer
hardware, data storage and network administration terminology and tasks.
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This manual introduces the motherboard and chassis along with the hardware information and how to
replace the hardware. This manual is generally organized as follows:
Table 1-1 Introduction of the Manual
Introduction The general introduction to the server.
Hardware Operations The operation of the components on the motherboard, such as battery,
processor, system memory, and so forth.
Connectors and Jumper Some necessary information of the connectors and jumper on the
motherboard.
BIOS Setup Information about BIOS setup.

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This chapter provides the detailed features for processor, memory, onboard LAN, D-sub VGA, I/O and
PCI with pictures for your reference.
Figure 1-1 Motherboard Overview
This motherboard dimension is designed for 12” x 13”. The motherboard is configured to use nVIDIA
MCP55Pro, nVIDIA IO 55 (for 2U) and NEC PCI-X bridge uPD 720404 chipset. It supports dual AMD®
Opteron™ 2000 series processors to accelerate even the most complicated server tasks. The following
highlights are the main features of the motherboard. For additional information, refer to this user manual.
Table 1-2 Product Features
Processor Dual AMD®Opteron™ 2000 series processors
Supports 800MHz, 400MHz, 200MHz/1000MHz/600MHz Hyper
Transport Bus
Hyper-Transport™ Technology Support
Located on two LGA1207-pin sockets F
Chipset System chip: nVIDIAMCP55Pro
Companying chip: nVIDIAIO 55 (For 2U)
NEC PCI-X bridge uPD 720404
Memory Twelve 240-pin DIMM vertical sockets
Supports up to 48GB of DDR2 667MHz
Supports ECC
Onboard LAN Two GbE RJ45 ports (For 1U)
Four GbE RJ45 ports (For 2U)

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1230B0026701 1-3
Network controllers embedded in nVIDIA MCP55Pro and IO 55 (For
2U)
10/100/1000Mbps
Supports teaming, load-balancing, failover, TOE and jumbo frame
Onboard VGA Embedded in Pilot SMC
Supports max 1280 x 1024 8 bpp, 1024 x 768 16 bpp
Integrated Super I/O ServerEngine Pilot controller
Supports one fast UART 16550 serial port, one PS/2 keyboard port, and
one PS/2 mouse port
Expansion Slots Expansion Slots (1U Chassis)
One PCI-E x16 slot with x8 speed or one PCI-X 64bit/100MHz slot
One PCI-E x8 slot with x4 speed
Expansion Slots (2U Chassis)
Two PCI-E x8 slots with x8 speed and one PCI-X 64bit/100MHz slot
Two PCI-E x8 slots with x8 speed and one PCI-E x8 slot with x4 speed
Daughter Cards SeeAppendix in the Chassis User Manual

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The layout of the motherboard is shown below. Each connector and major component is identified by the
number.
1.4.1 Connectors and Component Locations
Figure 1-2 Connectors and Component Locations
The words printed on the real motherboard to mark the processors are “CPU0” and
“CPU1”. Here just for consistency, the processors are marked with “PROCESSOR0”
and “PROCESSOR1” in the picture above.
The components indicated by red circles are not provided in 1U server.
This manual suits for next models
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Table of contents
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