Supero SuperServer 5013C-MT User manual

®
SUPER
SUPERSERVER 5013C-MT
USER’S MANUAL
Revision 1.0

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Copyright © 2004 by SUPER MICRO COMPUTER INC.
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Printed in the United States of America

Preface
About This Manual
This manual is written for professional system integrators and PC technicians.
It provides information for the installation and use of the SuperServer 5013C-MT.
Installation and maintainance should be performed by experienced technicians
only.
The SuperServer 5013C-MT is a high-end single processor 1U rackmount server
based on the SC813MT-300C 1U rackmount server chassis and the Super
P4SCT+ motherboard. The P4SCT+ supports a single Intel®Pentium®4 proces-
sor of up to 3.40 GHz (processors must be 0.13 micron technology) and Intel®
Celeron®processors of up to 2.80 GHz.
Manual Organization
Chapter 1: Introduction
The first chapter provides a checklist of the main components included with the
server system and describes the main features of the Super P4SCT+ motherboard
and the SC813MT-300C chassis.
Chapter 2: Server Installation
This chapter describes the steps necessary to install the SuperServer
5013C-MT into a rack and check out the server configuration prior to powering up
the system. If your server was ordered without the processor and memory
components, this chapter will refer you to the appropriate sections of the manual
for their installation.
Chapter 3: System Interface
Refer to this chapter for details on the system interface, which includes the
functions and information provided by the control panel on the chassis as
well as other LEDs located throughout the system.
iii
Preface

SUPERSERVER 5013C-MT User's Manual
iv
Chapter 4: System Safety
You should thoroughly familiarize yourself with this chapter for a general overview
of safety precautions that should be followed when installing and servicing the
SuperServer 5013C-MT.
Chapter 5: Advanced Motherboard Setup
Chapter 5 provides detailed information on the P4SCT+ motherboard, including
the locations and functions of connectors, headers and jumpers. Refer to this
chapter when adding or removing processors or main memory and when
reconfiguring the motherboard.
Chapter 6: Advanced Chassis Setup
Refer to Chapter 6 for detailed information on the SC813MT-300C 1U rackmount
server chassis. You should follow the procedures given in this chapter when
installing, removing or reconfiguring Serial ATA or peripheral drives and when
replacing system power supply units and cooling fans.
Chapter 7: BIOS
The BIOS chapter includes an introduction to BIOS and provides detailed
information on running the CMOS Setup Utility.
Appendix A: BIOS POST Messages
Appendix B: BIOS POST Codes
Appendix C: Software Installation
Appendix D: System Specifications

v
Preface
Notes

vi
Table of Contents
Preface
About This Manual ....................................................................................................... iii
Manual Organization .................................................................................................... iii
Chapter 1: Introduction
1-1 Overview ............................................................................................................ 1-1
1-2 Motherboard Features ..................................................................................... 1-2
1-3 Server Chassis Features ................................................................................ 1-5
1-4 Contacting Supermicro ................................................................................... 1-7
Chapter 2: Server Installation
2-1 Overview ............................................................................................................ 2-1
2-2 Unpacking the SuperServer 5013C-MT.......................................................... 2-1
2-3 Preparing for Setup ......................................................................................... 2-1
Choosing a Setup Location...................................................................... 2-2
Rack Precautions...................................................................................... 2-2
Server Precautions.................................................................................... 2-2
2-4 Installing the SuperServer 5013C-MT into a Rack....................................... 2-3
Identifying the Sections of the Rack Rails ............................................ 2-3
Installing the Rear Inner Rails ................................................................. 2-3
Installing the Rack Rails .......................................................................... 2-4
Installing the Server into the Rack ......................................................... 2-5
Installing the Server into a Telco Rack .................................................. 2-6
2-5 Checking the Motherboard Setup .................................................................. 2-7
2-6 Checking the Drive Bay Setup....................................................................... 2-9
Chapter 3: System Interface
3-1 Overview ............................................................................................................ 3-1
3-2 Control Panel Buttons..................................................................................... 3-1
Reset.......................................................................................................... 3-1
Power ......................................................................................................... 3-1
3-3 Control Panel LEDs......................................................................................... 3-2
Overheat ..................................................................................................... 3-2
NIC2 ............................................................................................................ 3-2
NIC1 ............................................................................................................ 3-2
HDD ............................................................................................................ 3-2
Power ......................................................................................................... 3-3
SUPERSERVER 5013C-MT User's Manual

3-4 Serial ATA Drive Carrier LEDs ....................................................................... 3-3
Chapter 4: System Safety
4-1 Electrical Safety Precautions......................................................................... 4-1
4-2 General Safety Precautions ........................................................................... 4-2
4-3 ESD Precautions ............................................................................................. 4-3
4-4 Operating Precautions .................................................................................... 4-4
Chapter 5: Advanced Motherboard Setup
5-1 Handling the P4SCT+ Motherboard ............................................................... 5-1
5-2 Motherboard Installation.................................................................................. 5-2
5-3 Connecting Cables .......................................................................................... 5-3
Connecting Data Cables .......................................................................... 5-3
Connecting Power Cables ........................................................................ 5-3
Connecting the Control Panel ................................................................. 5-3
5-4 I/O Ports ........................................................................................................... 5-4
5-5 Installing Processors ...................................................................................... 5-5
5-6 Installing Memory ............................................................................................ 5-7
5-7 Adding PCI Cards ............................................................................................ 5-8
5-8 Motherboard Details ........................................................................................ 5-9
P4SCT+ Layout ......................................................................................... 5-9
P4SCT+ Quick Reference ...................................................................... 5-10
5-9 Connector Definitions .................................................................................... 5-11
Power Supply Connectors...................................................................... 5-11
PW_ON Connnector................................................................................ 5-11
Reset Connector ..................................................................................... 5-12
Overheat LED (OH) ................................................................................. 5-12
GLAN2 LED ............................................................................................. 5-12
GLAN1 LED ............................................................................................. 5-12
IDE LED ................................................................................................... 5-13
Power_LED Connector ........................................................................... 5-13
NMI Button............................................................................................... 5-13
SMB Header ............................................................................................ 5-13
IR Connector............................................................................................ 5-14
Serial Ports ............................................................................................. 5-14
Fan Headers ............................................................................................ 5-14
Chassis Intrusion .................................................................................... 5-15
Wake-On-LAN.......................................................................................... 5-15
Wake-On-Ring ......................................................................................... 5-15
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Table of Contents

viii
ATX PS/2 Keyboard and PS/2 Mouse Ports ....................................... 5-15
Universal Serial Bus ............................................................................... 5-16
GLAN1/2 (Ethernet) Ports...................................................................... 5-16
SATA LED (Marvell)................................................................................ 5-16
SATA LED (Intel) .................................................................................... 5-16
5-10 Jumper Settings............................................................................................. 5-17
Explanation of Jumpers.......................................................................... 5-17
CMOS Clear ............................................................................................ 5-17
Front Side Bus Speed............................................................................ 5-17
USB Wake-Up ......................................................................................... 5-18
Watch Dog Enable/Disable.................................................................... 5-18
Speaker Jumper ...................................................................................... 5-18
Keyboard Wake-Up ................................................................................. 5-19
GLAN2 Enable/Disable ........................................................................... 5-19
VGA Enable/Disable ............................................................................... 5-19
Keylock Enable/Disable ......................................................................... 5-19
5-11 Onboard Indicators ........................................................................................ 5-20
Standby Power LED ............................................................................... 5-20
5-12 Parallel Port/Floppy and Hard Drive Connections...................................... 5-21
Parallel Port Connector .......................................................................... 5-21
Floppy Connector .................................................................................... 5-22
IDE Connectors ....................................................................................... 5-22
Chapter 6: Advanced Chassis Setup
6-1 Static-Sensitive Devices ................................................................................. 6-1
6-2 Control Panel ................................................................................................... 6-2
6-3 System Fans.................................................................................................... 6-3
System Fan Failure .................................................................................. 6-3
6-4 Drive Bay Installation/Removal ....................................................................... 6-3
Removing the Front Bezel ....................................................................... 6-3
Accessing the Drive Bays ....................................................................... 6-4
Serial ATA Drive Installation .................................................................... 6-4
CD-ROM Drive Installation ....................................................................... 6-6
6-5 Power Supply................................................................................................... 6-7
Power Supply Failure ............................................................................... 6-7
Replacing the Power Supply ................................................................... 6-7
SUPERSERVER 5013C-MT User's Manual

Table of Contents
ix
Chapter 7: BIOS
7-1 Introduction....................................................................................................... 7-1
7-2 Running Setup ................................................................................................. 7-2
7-3 Main BIOS Setup ............................................................................................ 7-2
7-4 Advanced BIOS Setup .................................................................................... 7-4
7-4.1 Advanced BIOS Features ............................................................. 7-4
7-4.2 Advanced Chipset Control ............................................................ 7-5
7-4.3 I/O Device Configuration ............................................................... 7-7
7-4.4 PnP Configuration.......................................................................... 7-9
7-4.5 Console Redirection .................................................................... 7-10
7-4.6 Hardware Monitor......................................................................... 7-11
7-4.7 Processor and Clock Options .................................................... 7-12
7-5 Security .......................................................................................................... 7-13
7-6 Boot................................................................................................................. 7-14
7-7 Exit.................................................................................................................. 7-15
Appendices:
Appendix A: BIOS POST Messages....................................................................... A-1
Appendix B: BIOS POST Codes ............................................................................. B-1
Appendix C: Software Installation ........................................................................... C-1
Appendix D: System Specifications ....................................................................... D-1

x
Notes
SUPERSERVER 5013C-MT User's Manual

Chapter 1
Introduction
1-1 Overview
The Supermicro SuperServer 5013C-MT is a high-end single processor, 1U
rackmount server. The 5013C-MT is comprised of two main subsystems: the
SC813MT-300C chassis and the P4SCT+ motherboard. The P4SCT+ supports
a single 478-pin Intel Pentium 4 microPGA processor at up to 3.40 GHz with HT
(hyper-threading) technology (or single a Intel Celeron processor of up to 2.80
GHz) and up to 4 GB of ECC or non-ECC unbuffered DDR400/333/266 SDRAM
memory. Please refer to our web site for information on operating systems that
have been certified for use with the 5013C-MT (www.supermicro.com) and for
regular updates on supported processor speeds.
In addition to the motherboard and chassis, various hardware components may
have been included with the 5013C-MT, as listed below.
!One CPU heatsink (SNK-P0002)
!One (1) slim CD-ROM drive
!Serial ATA (SATA) Accessories:
One (1) internal SATA backplane (CSE-SATA-813)
Four (4) SATA cables (CBL-0074)
One (1) SATA LED cables (CBL-0069)
Four (4) SATA drive carriers (CSE-PT39)
!One (1) 3.3V 64-bit, 66 MHz PCI-X slot riser card (CSE-RR1U-X)
!Rackmount hardware (with screws):
Two (2) rack rail assemblies
Six (6) brackets for mounting the rack rails in a rack/telco rack
!One (1) CD containing drivers and utilities
!SuperServer 5013C-MT User's Manual
Chapter 1: Introduction
1-1

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SUPERSERVER 5013C-MT User's Manual
1-2 Motherboard Features
At the heart of the SuperServer 5013C-MT lies the P4SCT+, a single processor
motherboard designed to provide maximum performance. Below are the main
features of the P4SCT+.
Chipset Overview
The P4SCT+ is based on Intel’s E7210 chipset (see Figure 1-1 for a block
diagram). The E7210 chipset is made up of two main components:
The Memory Controller Hub (MCH)
The I/O Controller Hub (6300ESB)
Memory Controller Hub (MCH)
The MCH controls the flow of data between the host (CPU) interface, the memory
interface and the I/O Controller Hub interface. It contains advanced power man-
agement logic and supports dual-channel (interleaved) DDR memory, providing
bandwidth of up to 6.4 GB/s using DDR400 SDRAM. The MCH supports configu-
rations of a 800 MHz FSB with a 400/333 memory interface, a 533 MHz FSB with
a 333/266 memory interface, and a 400 MHz FSB with a 266 MHz memory
interface.
The MCH supports 128 MB, 256 MB, 512 MB, 1 GB, x4, x8, and x16 DDR.
Maximum system memory supports up to 4.0 GB for dual-channel, ECC or Non-
ECC unbuffered DDR. Registered and/or mixed-mode DIMMs are not supported.
For more information, please refer to Chapter 5.
I/O Controller Hub (6300ESB)
The 6300ESB ICH provides the I/O subsystem with access to the rest of the
system. Itintegratesadual-channelUltraATA/100busmasterIDEcontroller,two
SerialATA(SATA)hostcontrollers,theSMBus2.0controller,theLPC/FlashBIOS
interface, the PCI-X (66MHz) 1.0 interface, the PCI 2.2 interface and the System
ManagementController.

Chapter 1: Introduction
1-3
Processors
The P4SCT+ supports a single Intel®Pentium®4 processor of up to 3.40 GHz
with hyper-threading technology in a 478-pin microPGA socket (must be 0.13
micron technology) or single a Intel®Celeron®processor of up to 2.80 GHz.
Please refer to the support section of our web site for a complete listing of
supported processors (http://www.supermicro.com/support/).
Memory
The P4SCT+ has four (4) 184-pin DIMM sockets that can support up to 4 GB of
ECC or non-ECC unbuffered DDR400/333/266 SDRAM modules. (Memory oper-
ates in a dual-channel, or interleaved configuration for increased performance.)
Low-profile memory modules are required for use in the 1U form factor of the
5013C-MT. Module sizes of 128 MB, 256 MB, 512 MB and 1 GB may be used
to populate the DIMM slots.
Serial ATA
A Serial ATA controller is incorporated into the E7210 chipset to provide a two-
port Serial ATA subsystem.
PCI Expansion Slots
The P4SCT+ has two 32-bit, 33 MHz (5V) PCI slots and three 64-bit, 66 MHz
(3.3V) PCI-X slots. When incorporated into the 5013C-MT server system, one 64-
bit, 66 MHz PCI-X slot is available with the use of a riser card, which supports
one full-height, full-length PCI card.
Ethernet Ports
The E7210 includes an on-chip Gb Ethernet controller and the P4SCT+ has an
additional Gb Ethernet controller to support a total of two Gigabit LAN ports.

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SUPERSERVER 5013C-MT User's Manual
Onboard Controllers/Ports
An onboard IDE controller supports one floppy drive and up to four Ultra ATA 100
hard drives or ATAPI devices. Onboard I/O backpanel ports include one serial
COM port, one parallel port, four USB ports, PS/2 mouse and keyboard ports and
two GLAN (RJ45) ports.
Other Features
Other onboard features that promote system health include eight voltage moni-
tors, a chassis intrusion header, auto-switching voltage regulators, chassis and
CPU overheat sensors, virus protection and BIOS rescue.
Figure 1-1 . Intel E7210 Chipset:
System Block Diagram
Note: This is a general block diagram. Please see Chapter 5 for details.
MCH
Processor 0
ICH
6300ESB
USB Ports
(4)
ATA/100
Ports (2)
DIMM
DIMM
Dual-Channel DIMMs (4)
(DDR400/333/266)
CSA Gb Ethernet
Controller (66MHz)
SATA Ports
(2)
FWH
Printer H/W Monitor
ADDR
CTLR
DATA
3.2 GB/s
Hub A
64-bit/66 MHz
UDMA
100
SATA
USB 2.0
Serial PortFDDKB/Mouse
LPC I/O
PCI-X
Gb Ethernet
Cntrlr ATI VGA
PCI
32-bit/33 MHz
LPC Bus

Chapter 1: Introduction
1-5
1-3 Server Chassis Features
The SuperServer 5013C-MT is a 1U rackmount server platform configuration. The
following is a general outline of the main features of the SC813MT-300C chassis.
System Power
When configured as a SuperServer 5013C-MT, the SC813MT-300C chassis in-
cludes a single 300W power supply.
Serial ATA Subsystem
The SC813MT-300C chassis was designed to support up to four Serial ATA hard
drives. The Serial ATA drives are hot-swappable units. ATA/100 IDE drives are
also supported.
Control Panel
The SC813MT-300C's control panel provides important system monitoring and
control information. LEDs indicate power on, network activity, hard disk drive
activity and overheat conditions. The control panel also includes a main power
button and a system reset button.
Rear I/O Panel
The rear I/O panel on the SC813MT-300C provides one motherboard expansion
slot, one COM port (another is internal), two USB ports, PS/2 mouse and key-
board ports, a parallel (printer) port, a graphics port and two Gb Ethernet ports.
(See Figure 1-2.)

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SUPERSERVER 5013C-MT User's Manual
Cooling System
The SC813MT-300C chassis has an innovative cooling design that features three
4-cm high performance cooling fans. The fans plug into headers on the
motherboard and operates at full rpm continuously.
Figure 1-2. Rear I/O Panel

Chapter 1: Introduction
1-7
1-4 Contacting Supermicro
Headquarters
Address: SuperMicro Computer, Inc.
980 Rock Ave.
San Jose, CA 95131 U.S.A.
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
Web Site: www.supermicro.com
Europe
Address: SuperMicro Computer B.V.
Het Sterrenbeeld 28, 5215 ML
's-Hertogenbosch, The Netherlands
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
[email protected] (Customer Support)
Asia-Pacific
Address: SuperMicro, Taiwan
D5, 4F, No. 16 Chien-Ba Road
Chung-Ho 235, Taipei Hsien, Taiwan, R.O.C.
Tel: [phone]
Fax: [phone]
Web Site: www.supermicro.com.tw
Technical Support:
Email: su[email protected]
Tel: [phone], ext.132 or 139

1-8
SUPERSERVER 5013C-MT User's Manual
Notes

Chapter 2: Server Installation
2-1
Chapter 2
Server Installation
2-1 Overview
This chapter provides a quick setup checklist to get your SuperServer 5013C-MT
up and running. Following the steps in the order given should enable you to have
the system operational within a minimal amount of time. This quick setup
assumes that your 5013C-MT system has come to you with the processor and
memory preinstalled. If your system is not already fully integrated with a moth-
erboard, processor, system memory etc., please turn to the chapter or section
noted in each step for details on installing specific components.
2-2 Unpacking the SuperServer 5013C-MT
You should inspect the box the SuperServer 5013C-MT was shipped in and note
if it was damaged in any way. If the server itself shows damage, you should file
a damage claim with the carrier who delivered it.
Decide on a suitable location for the rack unit that will hold the SuperServer
5013C-MT. It should be situated in a clean, dust-free area that is well ventilated.
Avoid areas where heat, electrical noise and electromagnetic fields are gener-
ated. You will also need it placed near a grounded power outlet. Read the Rack
and Server Precautions in the next section.
2-3 Preparing for Setup
The box the SuperServer 5013C-MT was shipped in should include two sets of rail
assemblies, six rail mounting brackets and the mounting screws you will need
to install the system into the rack. Follow the steps in the order given to
complete the installation process in a minimal amount of time. Please read this
section in its entirety before you begin the installation procedure outlined in the
sections that follow.

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SUPERSERVER 5013C-MT User's Manual
Choosing a Setup Location
- Leave enough clearance in front of the rack to enable you to open
the front door completely (~25 inches).
- Leave approximately 30 inches of clearance in the back of the rack
to allow for sufficient airflow and ease in servicing.
Rack Precautions
- Ensure that the leveling jacks on the bottom of the rack are fully
extended to the floor with the full weight of the rack resting on them.
- In a single rack installation, stabilizers should be attached to the rack.
- In multiple rack installations, the racks should be coupled together.
- Always make sure the rack is stable before extending a component
from the rack.
- You should extend only one component at a time - extending two or
more simultaneously may cause the rack to become unstable.
Server Precautions
- Review the electrical and general safety precautions in Chapter 4.
- Determine the placement of each component in the rack before you
install the rails.
- Install the heaviest server components on the bottom of the rack
first, and then work up.
- Use a regulating uninterruptible power supply (UPS) to protect the server
from power surges, voltage spikes and to keep your system operating in
case of a power failure.
-Allow the power supply units and hot plug Serial ATA drive to cool before
touching them.
- Always keep the rack's front door and all panels and components on
the servers closed when not servicing to maintain proper cooling.
! !
Warnings and Precautions!