Genetix ClonePix FL User manual

07MAN1054.A2
Effective Date: 27-May-11
ClonePixTM FL
Robot Manual

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Contents
Table of Figures .................................................................................................4
Introduction to ClonePix FL..............................................................................5
Technical Specifications ...................................................................................6
External Dimensions and Weight.............................................................................................6
Compressed Air Supply............................................................................................................6
Operating Environment.............................................................................................................6
Electrical Supply........................................................................................................................7
Electrical Connections..............................................................................................................8
Symbols on Equipment.............................................................................................................8
PC Connections.........................................................................................................................9
Filter options ............................................................................................................................10
Robot Enclosure ..............................................................................................11
Installation........................................................................................................12
Layout of ClonePix FL and Ancillary Equipment .................................................................12
Source and Destination Plate Stackers.................................................................................13
Connecting the Wash Bottles.................................................................................................14
Connecting the Ethanol Bottles .............................................................................................14
Camera Alignment ...................................................................................................................15
ClonePix FL Panel ...................................................................................................................15
Health and Safety.............................................................................................16
Important Note .........................................................................................................................16
Transport and Storage ............................................................................................................16
Lifting Points............................................................................................................................16
External Covers .......................................................................................................................16
Safety Features ........................................................................................................................17
Electrical Safety.......................................................................................................................18
Drive Safety..............................................................................................................................18
Hot Air/Halogen Dryer .............................................................................................................18
Noise Levels.............................................................................................................................18
Service and Maintenance........................................................................................................18
Initial Operation................................................................................................19
System Features ......................................................................................................................19
Pre-Power-Up Checklist..........................................................................................................19
Power-Up Procedures .............................................................................................................20
Shutdown procedure...............................................................................................................20

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General Maintenance.......................................................................................21
Regular Maintenance ..............................................................................................................21
General Precautions................................................................................................................22
Cleaning Procedures...............................................................................................................22
Removable Parts................................................................................................................. 22
Cleaning of Instrument Interior ............................................................................................ 24
Cleaning of System Fluid (Sterile Water) Supply ................................................................ 24
Incoming Compressed Air Supply ....................................................................................... 24
Automated Picking Pin Cleaning......................................................................................... 25
Sterility Validation Tests ...................................................................................................... 25
Changing the Picking Head ....................................................................................................26
Remove Head:..................................................................................................................... 26
Replace Head:..................................................................................................................... 26
Changing or Replacing Picking Pins.....................................................................................26
Replacement Parts and Optional Extras........................................................27
Replacement Parts ..................................................................................................................27
Optional Extras ........................................................................................................................27
Reagents and Supplies....................................................................................28
CloneDetect Detection Reagents...........................................................................................28
CloneMatrix ..............................................................................................................................29
CloneMedia and XP Media ......................................................................................................29
PetriWell Cell Culture Plates ..................................................................................................30
Other .........................................................................................................................................31
Troubleshooting...............................................................................................32
Common Problems..................................................................................................................32
Glossary of Terms ...........................................................................................33
Index .................................................................................................................36
Contact Details.................................................................................................37

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Table of Figures
Figure 1: ClonePix FL electrical connections ........................................................................... 8
Figure 2: ClonePix FL PC connections ...................................................................................... 9
Figure 3: ClonePix FL layout and dimensions ........................................................................ 12
Figure 4: Stacker orientation .................................................................................................... 13
Figure 5: Stackers and cassettes ............................................................................................. 14
Figure 6: Connecting the wash bottles.................................................................................... 14
Figure 7: ClonePix FL Panel...................................................................................................... 15

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Introduction to ClonePix FL
Manufactured by Genetix Ltd (UK)
ClonePix™ FL is a dedicated solution for imaging, identification, and selective picking of
antibody or protein secreting cells. The technology is based on quantitative fluorescence
detection. The system is also compatible with direct fluorescence (e.g. GFP expression).
• Automated delivery and lid removal of 1 well and 6 well micro-plate format plates to on
board imaging station and dispersal of picked colonies to 96 well plates.
• Fluorescent imaging using a choice of five filter sets.
• Colonies selected on the basis of size, shape and proximity to neighbors.
• Colonies ranked based on fluorescent intensity of the colony or the secreted product.
• Automated selective picking using high precision picking pins with proprietary cleaning
routine between each pick.
Intuitive Windows
®
-based software allows you to easily set up multiple picking processes and
analyze the results. For detailed information about the software please see the ClonePix FL
Software Application Manual.
Note: ClonePix FL is strictly for research use only and is not intended or recommended for the
diagnosis of disease in humans or animals.
If the robot is used in a manner not specified in this manual the protection provided by the
equipment may be impaired.

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Technical Specifications
External Dimensions and Weight
Size (excluding ancillary equipment): 1010mm (width) x 900mm (depth) x 1495mm (height)
Weight: Robot - 350 kg (maximum)
Compressor - 60 kg
Compressed Air Supply
Minimum Pressure: 6 bar
Minimum volume: 80L/min
Operating Environment
Indoor use only
Temperature: 10°C to 40°C
Humidity: 20 to 80% non-condensing
Altitude: Up to 2000M
Mains supply: +/- 10% Rated Voltage
Transient overvoltage: Installation Category (Overvoltage category) II
Rated pollution: Pollution degree 2

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Electrical Supply
European:
Voltage: 210 - 250V AC 45-66 Hz single phase
Power: Robot - 2500W
Halogen Heater - 300W
Connections: IEC Input - Robot Mains / Halogen Heater
IEC Output - PC
IEC Output - Monitor
Fuses: Input - F3 – T10A - Robot / Halogen Heater
Output - F2 - T5A - Computer and Monitor
Compressor: 230V AC 50Hz 3.4A
USA/Japan:
Voltage: 100 – 125V AC 45-66 Hz single phase
Power: Robot -1250W
Halogen Heater - 300W
Connections: IEC Input - Robot Mains / Halogen Heater
IEC Output - PC
IEC Output - Monitor
Fuses: Input - F3 - T10A - Robot / Halogen Heater
Output - F2 - T5A - Computer and Monitor
Compressor: 120V AC 60Hz 7.5A

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Electrical Connections
Figure 1:
ClonePix FL electrical connections
Symbols on Equipment
Symbol Meaning
Beware moving parts.
Refer to Robot Manual for operating instructions.
2007
The year of manufacture is given on the serial number label which is located
on the right side of the unit.
European Economic Area (EEA)
This mark on the product indicates compliance with the following EEC Directives:
- 98/37/EEC, relating to The Supply of Machinery (Safety) Regulations 1992
- 89/336/EEC with amendments 92/31/EEC, relating to Electromagnetic Compatibility
- 73/23/EEC, the Low Voltage Directive

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PC Connections
Figure 2:
ClonePix FL PC connections

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Filter options
Filter set Excitation Emission
Cat. No. Suitable for: Wavelength (nm) Filter
Position
Wavelength (nm) Filter
Position
X4990 CFP
AF430
440
(Royal Blue)
4 505
(Cyan)
4
X4991
(standard)
CloneDetect FITC*
Fluorescein
GFP
AF488
470
(Blue)
3 535
(Green)
3
X4992 YFP 500
(Cyan)
2 550
(Yellow)
2
X4993 CloneDetect 549*
R-phycoerythrin
Rhodamine
AF546
530
(Green)
1 590
(Red)
1
X4994 CloneDetect 649*
Cy5
FMAT Blue
AF647
622
(Red)
6 700
(Far Red)
6
Notes:
• *Refer to Reagents & Supplies section for details on how to order CloneDetect reagents.
• White light imaging uses excitation filter position 7 and emission filter position 5.

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Robot Enclosure
ClonePix FL is designed to provide a controlled environment for sample protection conducive to
accurate and reliable mammalian cell picking. Protection within the robot top cover is provided
by utilizing a rear mounted HEPA filtered air supply and a front mounted exhaust fan. This
creates a horizontal laminar flow of sterile air across the picking area of the bed of the machine
whilst the front door is closed.
The main features are:
• Class 100 type enclosure
• Offers product protection from particulates and microbes.
• HEPA filtration (99.999% at 0.3 microns exclusion).
• Laminar airflow across the bed.
• Air inflow greater than air exhaust maintains positive air pressure.
• Always on when ClonePix FL is on.
• Integrated UV germicidal lamp with timer.
Note: The ClonePix FL robot enclosure does not offer operator protection.

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Installation
Note: Installation is to be undertaken only by Genetix approved personnel.
Layout of ClonePix FL and Ancillary
Equipment
Front view:
Top view:
Figure 3:
ClonePix FL layout and dimensions

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Source and Destination Plate Stackers
ClonePix FL uses a stacker system to hold and process the source and destination plates. The
source stacker is located at the rear of the machine and the destination stacker towards the
front. The stacker cassettes can accommodate up to 10 standard microplates or 12 Genetix
microplates. Plates must be loaded into the feed cassette with lids on and well A1 facing
towards the imaging station. The filled feed cassette and empty return cassette are then placed
into the respective stacker. The plates are automatically fed onto the bed individually and the lid
is removed as the plate is pushed past the return cassette location. The lid is replaced as the
plate moves to the return cassette.
Figure 4:
Stacker orientation
To insert the feed cassettes, push firmly into place until the cassette sits in the stacker.
The return cassettes have a locking mechanism to secure them while in use (see Figure 5
below). To insert the return cassette, pull the return lock outwards and twist it about a half turn
to hold in the ‘out’ position. Lower the cassette into the stacker then release the return lock by
turning it again about half a turn. Check that the lock returns fully into place.

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Figure 5:
Stackers and cassettes
Connecting the Wash Bottles
The tubing carrying system fluid (sterile water) to the Wash Station and back to the waste bottles
will be connected by a Genetix approved engineer on commissioning of ClonePix FL. If it is
necessary to disconnect these make sure that they are marked so that the tubes can be re-
connected correctly. The outlets on the machine are in the same order as the bottles on the
wash station.
Figure 6:
Connecting the wash bottles
Connecting the Ethanol Bottles
The tubing carrying ethanol to the Ethanol Wash Bath and back to the ethanol waste bottle will
be connected by a Genetix approved engineer on commissioning of ClonePix FL. If it is
necessary to disconnect these make sure that they are marked so that the tubes can be re-
connected correctly.

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Camera Alignment
To guarantee the most accurate picking, it is crucial that the camera is calibrated and aligned
correctly.
The aim of camera alignment is to achieve pin-to-spot accuracy, relating the image pixel co-
ordinates with the robot x, y co-ordinates.
Calibration and alignment are performed before ClonePix FL is dispatched and will be checked
by a Genetix approved engineer when the robot is installed.
If the actuator is subject to a knock or a crash, picking accuracy may be affected. Therefore it
may be necessary to re-calibrate the camera. This should be carried out by a Genetix
approved engineer.
ClonePix FL Panel
Figure 7:
ClonePix FL Panel
The lights on the panel indicate which elements of the robot are operating. The panel houses the
Reset button and the Emergency Stop button.

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Health and Safety
Important Note
Before using the robot, it is very important that you have read this manual and have
understood all the safety instructions.
Prior to using the robot, please make sure that you have been through the robot
Pre-Power-Up checklist. This checklist ensures that all moving parts on the Robot
are correctly situated in their datum positions.
Then follow the procedures as set out in the Power Up section.
Transport and Storage
The robot must be stored and transported in temperatures within the range -25
°
C to +55
°
C.
The machine is fitted with caster wheels for ease of movement.
Lifting Points
The machine should not be moved after installation. If relocation is necessary, standard lifting
gear is adequate but should be undertaken only in the presence of a Genetix approved engineer.
The robot should be moved into position using appropriate handling equipment such as forklift
trucks or dolly trucks. The machine should be properly balanced on the forks prior to lifting.
Important note: Do not use any part of the exterior bodywork to lift the instrument as this
may cause irreparable damage.
External Covers
Warning – If any of the external covers on ClonePix FL are removed the power supply is not
automatically interrupted. If it is necessary to remove any of the external covers it is essential that
the power is switched off first. Do not attempt to use the robot until the covers are replaced.

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Safety Features
Isolator Switch:
Turns on power to ClonePix FL. The isolator switch is the round red switch located at the bottom
of the right-hand side panel. ClonePix FL is powered up by turning the switch 90º from ‘O’ to ‘I’.
Door:
The machine will not run with the front door open. If the door is open an electromagnetic switch
prevents the machine from running. This switch should never be tampered with, as it serves two
purposes:
• It prevents the motors from running and therefore the potential of any physical damage.
• It disables the UV light therefore preventing the risk of damage from UV radiation.
The door is made from acrylic, and so prevents UV light from passing through during operation.
UV Light:
ClonePix FL is fitted with a UV germicidal lamp with timer. This is a 30W linear discharge lamp
with a sharply defined output at 253.7nm making the lamp an efficient source of germicidal
radiation.
Emergency STOP Button:
The location of the Emergency Stop button is shown in Figure 7 (Page 15). Striking the
Emergency Stop button will immediately stop the machine and cut power from the drives. The
button must be pulled out before the machine can be restarted.
Note: If the PC is powered from the robot, power to the PC will also be cut and current data
will be lost.

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Electrical Safety
The robot must be connected to a properly earthed power outlet to protect users from the risk of
electric shock. The main chassis of the machine is earthed together with all associated electrical
components.
Do not remove any of the fixed covers, as there are no user serviceable parts inside. All internal work
should be referred to Genetix approved service personnel.
In the event of a liquid spillage into the base cavity of the robot, the power supply must be
disconnected at the mains before any attempt is made to clean up the spillage.
There should not be any spillage from the Wash Bath in normal use with the Wash Station correctly
set up. However, spill trays have been fitted where appropriate.
Drive Safety
Be aware that the motors use high-powered magnets.
The linear drive units and encoders are delicate so great care should be taken with them.
The Pre-Power-Up checklist should be followed before every routine in order to prevent serious
damage to the robot or any of its constituent parts.
Power is removed from the drives when the doors are open.
Hot Air/Halogen Dryer
ClonePix FL is fitted with an ultra-high temperature halogen dryer. The casing may become hot
during the drying cycle.
Noise Levels
During normal operation the level of airborne noise emitted by the robot will not exceed 70db
measured at a distance of 1 meter.
Service and Maintenance
It is strongly recommend that maintenance be carried out regularly by a Genetix-approved
service engineer.
Maintenance contracts can be obtained from Genetix. Please contact sal[email protected].
The user is responsible for General Maintenance (page 21).

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Initial Operation
System Features
ClonePix FL is constructed within a welded steel framework. The outer measurements are given
in the Technical Specifications section on page 6. Be aware that these dimensions do not allow
for opening robot doors.
The lifting door on the front of the machine, protected by an electro-mechanical interlock,
contains the working volume of the machine.
The bed of the machine contains the source and destination stackers, and the wash system,
which is used for cleaning the Picking Pins between cycles in order to eliminate pin blockage
and cross-contamination.
The stacker system can hold up to 10 standard microplates or 12 Genetix microplates.
The Z ball-screw drive carries a unique actuator system that accommodates the head.
This system allows for easy exchange and set-up of the head.
Pre-Power-Up Checklist
• Check that the Emergency Stop button (see Figure 7 on page 15) is released (pulled out).
ClonePix FL will not start if the button is pushed in.
• Check that no items have been left on the bed of the instrument.
• Check that all motor tracks are free of obstruction.
• Check that there are no obstructions to head movement.
• Check that the main robot axes, XY, are roughly in the centre of their respective travel
positions. The axes need to be away from their respective end-stops on ‘start up’ in order
that they may reference themselves correctly to their ‘home’ positions.
• Check that the lifting door on the front of the robot is closed.
• Ensure that there are no plates or cassettes in the stackers.

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Power-Up Procedures
Note: The computer will power on with ClonePix FL.
• Turn on the power supply to the compressor.
• Turn main isolator switch on the lower right side of the unit to the on position (1). This
isolator switch is lockable and clearly labeled. The red ‘Power On’ indicator (on the front
panel of the instrument) illuminates. If the system fails to ‘power on’, it is likely that the
lifting door is open or the emergency stop button is pushed in.
• Check that the air supply indicator (on front panel) is on.
• Ensure RESET button is pressed (red light goes off).
• Once the computer has booted up, click on the ClonePix FL icon. The first time ClonePix FL
is used, the three axes will sequentially go through their ‘Initialize drives’ routine. This
enables the drives to find their respective datum positions. ClonePix FL must be allowed to
complete this process without interference to ensure that there is no damage to the
instrument or its ancillary equipment.
Shutdown procedure
• Exit from the ClonePix FL application by selecting Exit from the File menu on the main
setup screen.
• Close down Windows – Click the Start menu at the bottom of the screen then click Shut
Down. Wait for computer to switch off completely.
• Switch the main isolator switch to the off (0) position.
• Turn the power off at the mains.