GIGA-BYTE TECHNOLOGY GA-7PESE3 User manual

GA-7PESE3
LGA1356 socket motherboard for Intel®Xeon®series processors
User's Manual
Rev. 1001

Copyright
©2012 GIGA-BYTE TECHNOLOGY CO., LTD. All rights reserved.
The trademarks mentioned in this manual are legally registered to their respective owners.
Disclaimer
Information in this manual is protected by copyright laws and is the property of GIGABYTE.
Changes to the specifications and features in this manual may be made by GIGABYTE
without prior notice. No part of this manual may be reproduced, copied, translated, transmitted, or
published in any form or by any means without GIGABYTE's prior written permission.
Documentation Classications
In order to assist in the use of this product, GIGABYTE provides the following types of documentations:
For detailed product information, carefully read the User's Manual.
For product-related information, check on our website at:
http://www.gigabyte.com

- 3 -
Table of Contents
Box Contents...................................................................................................................5
GA-7PESE3 Motherboard Layout ...................................................................................6
Chapter 1 Hardware Installation .....................................................................................9
1-1 Installation Precautions.................................................................................... 9
1-2 ProductSpecications.................................................................................... 10
1-3 Installing the CPU and CPU Cooler ............................................................... 12
1-3-1 Installing the CPU...................................................................................................12
1-3-2 Installing the CPU Cooler .......................................................................................13
1-4 Installing the Memory..................................................................................... 14
1-4-1 ThreeChannelMemoryConguration ...................................................................14
1-4-2 Installing a Memory ...............................................................................................15
1-5 Back Panel Connectors.................................................................................. 16
1-6 Internal Connectors........................................................................................ 17
Chapter 2 BIOS Setup ..................................................................................................35
2-1 The Main Menu .............................................................................................. 37
2-2 Advanced Menu ............................................................................................. 39
2-2-1 PCIConguration ...................................................................................................40
2-2-2 Trusted Computing ................................................................................................41
2-2-3 CPUConguration..................................................................................................42
2-2-3-1 CPUPowerManagementConguration ................................................................45
2-2-4 Runtime Error Logging ...........................................................................................46
2-2-5 SATAConguration.................................................................................................47
2-2-6 SASConguration..................................................................................................48
2-2-7 SuperIOConguration...........................................................................................49
2-2-8 Serial Port Console Redirection .............................................................................51
2-2-9 Network Stack ........................................................................................................53
2-3 Chipset Menu................................................................................................. 54
2-3-1 NorthBridgeConguration.....................................................................................55
2-3-1-1 IOHConguration...................................................................................................57
2-3-1-2 DIMM Information...................................................................................................59
2-3-3 ME Subsystem .......................................................................................................61
2-4 Security Menu ................................................................................................ 62
2-5 Server Management Menu............................................................................. 63
2-5-1 System Information.................................................................................................64
2-5-2 BMCLANConguration .........................................................................................65
2-6 Boot Option Menu .......................................................................................... 66

- 4 -
2-7 Boot Manager................................................................................................. 67
2-8 Exit Menu ....................................................................................................... 68
2-9 BIOS Beep Codes.......................................................................................... 70
2-10 BIOS Recovery Instruction............................................................................. 71
Chapter 3 Appendix ......................................................................................................73
3-1 Regulatory Statements................................................................................... 73

- 5 -
Box Contents
GA-7ESE3 motherboard
Driver CD
Two SATA cables
I/O Shield
Power Cable
•The box contents above are for reference only and the actual items shall depend on the product package you obtain.
The box contents are subject to change without notice.
•The motherboard image is for reference only.

- 6 -
GA-7PESE3 Motherboard Layout
2 3 4 5 76
1
8
9
11
10
12
13
14
15
16
17
18
19
212223
24
25
26
27
28
29
30
31
32
33
35
34
36
37
38
39 40 41
42
43 46
45
47
48
49
52
50
51
44
20

- 7 -
Item Code Description
1 RAID_KEY_1 RAID Select connector
2 ID_SW ID switch
3 MLAN KVM Server Management 10/100 LAN Port
4 USB_LAN1 LAN1 port (top) / USB ports (bottom)
5 USB_LAN2 LAN2 port (top) / USB ports (bottom)
6 PCIE_3 PCI-E slot 3 (x8 slot)
7 COM1_VGA1 Serial port (top)/VGA port (bottom)
8 PMBUS_CN_1 PMBus connector
9 ATX1 24 pin power connector
10 P12V_AUX2 8 pin power connector
11 P12V_AUX1 4 pin power connector
12 SKU_KEY1 Intel C600 series Upgrade Key
13 BMC_LED1 BMCrmwarereadinessLED
14 DDR3_P1_D0 Channel 1 slot 0 (for secondary CPU)
15 DDR3_P1_D1 Channel 1 slot 1 (for secondary CPU)
16 DDR3_P1_E0 Channel 2 slot 0 (for secondary CPU)
17 DDR3_P1_E1 Channel 2 slot 1 (for secondary CPU)
18 DDR3_P1_F0 Channel 3 slot 0 (for secondary CPU)
19 DDR3_P1_F1 Channel 3 slot 1 (for secondary CPU)
20 P12V_CPU0 4 pin power connector
21 CPU1 Intel LGA1356 socket (Secondary CPU)
22 IPMB1 IPMB connector
23 CPU0 Intel LGA1356 socket (Primary CPU)
24 SATA_SGPIO SATA SGPIO connector
25 DDR3_P0_C1 Channel 3 slot 1 (for primary CPU)
26 DDR3_P0_C0 Channel 3 slot 0 (for primary CPU)
27 DDR3_P0_B1 Channel 2 slot 1 (for primary CPU)
28 DDR3_P0_B0 Channel 2 slot 0 (for primary CPU)
29 DDR3_P0_A1 Channel 1 slot 1 (for primary CPU)
30 DDR3_P0_A0 Channel 1 slot 0 (for primary CPU)
31 BP_1 HDD back plane connector
32 FP_1 Front panel connector
33 SATA_DOM1 SATA port1 DOM support jumper
34 SATA_DOM0 SATA port0 DOM support jumper
35 SATA0/1 SATA 6Gb/s connectors
36 SATA2/3/4/5 SATA 3Gb/s connectors
37 F_USB1 Front USB connector
38 COM2 Serial port connector
39 MINI_CN2 Mini SAS connector #2 (SATA signal)
40 MINI_CN1 Mini SAS connector #1 (SATA signal)
41 SSB_ME2 MEashjumper
42 PCIE_1 PCI-E slot 1 (x16 slot)
43 BIOS_RVCR1 BIOS recovery jumper
44 CLR_CMOS1 Clear CMOS jumper
45 PCIE_2 PCI-E slot 2 (x16 slot)

- 8 -
Item Code Description
46 TPM_MEZZ1 TPM module connector
47 PASSWORD5 Clear password jumper
48 SSB_ME1 ME recovery jumper
49 BAT Battery socket
50 BMC_FRB3 Force to Stop FRB3 Timer Jumper
51 S3_MASK S3 Power On Select jumper
52 BIOS_WP BIOS write protect jumper
CAUTION! If a SATA type hard drive is connected to the motherboard, please ensure the jumper is
closed and set to 2-3 pins (Default setting), in order to reduce any risk of hard disk damage. Please
refer to Page 34 for SATA_DOM0 and SATA_DOM1 jumper setting instruction.

- 9 -
Hardware Installation
1-1 Installation Precautions
The motherboard contains numerous delicate electronic circuits and components which can
become damaged as a result of electrostatic discharge (ESD). Prior to installation, carefully read
the user's manual and follow these procedures:
• Prior to installation, do not remove or break motherboard S/N (Serial Number) sticker or
warranty sticker provided by your dealer. These stickers are required for warranty validation.
• Always remove the AC power by unplugging the power cord from the power outlet before
installing or removing the motherboard or other hardware components.
• When connecting hardware components to the internal connectors on the motherboard,
make sure they are connected tightly and securely.
• When handling the motherboard, avoid touching any metal leads or connectors.
• It is best to wear an electrostatic discharge (ESD) wrist strap when handling electronic com-
ponents such as a motherboard, CPU or memory. If you do not have an ESD wrist strap,
keep your hands dry and rst touch a metal object to eliminate static electricity.
• Prior to installing the motherboard, please have it on top of an antistatic pad or within an
electrostatic shielding container.
• Before unplugging the power supply cable from the motherboard, make sure the power sup-
ply has been turned off.
• Before turning on the power, make sure the power supply voltage has been set according to
the local voltage standard.
• Before using the product, please verify that all cables and power connectors of your hard-
ware components are connected.
• To prevent damage to the motherboard, do not allow screws to come in contact with the
motherboard circuit or its components.
• Make sure there are no leftover screws or metal components placed on the motherboard or
within the computer casing.
• Do not place the computer system on an uneven surface
.
• Do not place the computer system in a high-temperature environment.
• Turning on the computer power during the installation process can lead to damage to sys-
tem components as well as physical harm to the user.
• If you are uncertain about any installation steps or have a problem related to the use of the
product, please consult a certied computer technician.
Chapter 1 Hardware Installation

Hardware Installation
- 10 -
1-2 ProductSpecications
CPU Support for Dual Intel®Xeon®Sandy-bridge-EN processors in 1356 socket
Intel®Xeon®Quad/Eight Core in LGA 1356 socket
Supports QuickPath Interconnect up to 8GT/s
Enhanced Intel SpeedStep Technology (EIST) & Demand BasedSwitch (DBS)
Enhanced Intel SpeedStep Technology (EIST)
Support Intel Virtualization Technology (VT)
Chipset Intel®C602 (Patsburg) Chipset
Memory 12 x 1.5V DDR3 DIMM sockets supporting up to 384 GB of systemmemory
12 x 1.35V DDR3L DIMM sockets supporting up to 384 GB of system memory
3 channel memory architecture
Support for 1066/1333/1600 memory modules
Support for ECC RDIMM/ UDIMM memory modules
LAN Intel®I350 supports 10/100/1000 Mbps
1 x KVM management LAN port
Expansion Slots 2 x PCIe x16 slots (Gen3 x16 bus)
1 x PCIe x8 slot (Gen3 x8 bus)
Onboard
Graphics
ASPEED®AST2300 supports 16MB VRAM
Storage Interface Intel® C602 controller
2 x SATA 6Gb/s connectors (SATA0/SATA1)
4 x SATA 3Gb/s connectors (SATA2/SATA3/SATA4/SATA5)
2 x Mini SAS connector (8 SATA/SAS ports (3Gb/s) via SCU)
Support for Intel RSTe SATA RAID 0, RAID 1
USB Up to 6 USB 2.0/1.1 ports (4 on the back panel, 2 via the USB brackets connected
to the internal USB headers)
Internal
Connectors
1 x 24-pin ATX main power connector
1 x 8-pin ATX 12V power connector
2 x 4-pin ATX 12V power connectors
2 x SATA 6Gb/s connectors (SATA0/1)
4 x SATA 3Gb/s connectors (SATA2/3/4/5)
2 x Mini SAS connector (8 SATA/SAS ports (3Gb/s) via SCU)
1 x PMBus connector
1 x Front panel header
1 x Back plance header
1 x SCU Key header
1 x IPMI connector
1 x TPM connector
1 x USB 2.0/1.1 connector
1 x Serial port connector
1 x SPGIO header

- 11 -
Hardware Installation
Rear Panel I/O 4 x USB 2.0/1.1 ports
3 x RJ-45 port (1 x 10/100 dedicated management LAN port/ 2 x 10/100/1000
LAN ports)
1 x COM port
1 x VGA port
1 x ID Switch button
I/O Controller ASPEED®AST2300 BMC chip
Hardware
Monitor
System voltage detection
CPU/System temperature detection
CPU/System fan speed detection
CPU/System fan speed control
* Whether the CPU/system fan speed control function is supported will depend on
the CPU/system cooler you install.
BIOS 1 x 64 Mbit ash
AMI BIOS
Form Factor EATX Form Factor; 12 inch x 12.9 inch, 10 layers PCB
* GIGABYTE reserves the right to make any changes to the product specications and product-related information
without prior notice.

Hardware Installation
- 12 -
1-3 Installing the CPU and CPU Cooler
1-3-1 Installing the CPU
Step 1. Raise the metal locking lever on the socket.
Step 2. Remove the plastic covering on the CPU socket.
Step 3. Lift the metal cover.
Step 4. Insert the CPU with the correct orientation. The CPU only ts in one orientation.
Step 5. Please replace the metal cover and push the metallever back into locked position.
Read the following guidelines before you begin to install the CPU:
• Make sure that the motherboard supports the CPU.
(Go to GIGABYTE's website for the latest CPU support list.)
• Always turn off the computer and unplug the power cord from the power outlet before installing
the CPU to prevent hardware damage.
• Locate the pin one of the CPU. The CPU cannot be inserted if oriented incorrectly. (Or you may
locate the notches on both sides of the CPU and alignment keys on the CPU socket.)
• Apply an even and thin layer of thermal grease on the surface of the CPU.
• Do not turn on the computer if the CPU cooler is not installed, otherwise overheating and
damage of the CPU may occur.
• Set the CPU host frequency in accordance with the CPU specications. It is not recommended
that the system bus frequency be set beyond hardware specications since it does not meet the
standard requirements for the peripherals. If you wish to set the frequency beyond the standard
specifications, please do so according to your hardware specifications including the CPU,
graphics card, memory, hard drive, etc.

- 13 -
Hardware Installation
1-3-2 Installing the CPU Cooler
Follow the steps below to correctly install the CPU cooler on the motherboard.
Step 1. Attach the heat sink clip to the processor socket.
Step 2. Secure the cooing fan with screws..
Step 3. Connect processor fan can cable to the processor fan connector.
Use extreme care when removing the CPU cooler because the thermal grease/tape between the
CPU cooler and CPU may adhere to the CPU. Inadequately removing the CPU cooler may damage
the CPU.
1
1
1
1
2

Hardware Installation
- 14 -
1-4-1 ThreeChannelMemoryConguration
The system provides 12 DDR3 memory sockets for per CPU and supports Three Channel Technology. After
the memory is installed, the BIOS will automatically detect the specications and capacity of the memory.
Enabling Three Channel memory mode will be triple of the original memory bandwidth.
The six DDR3 memory sockets are divided into three channels each channel has two memory sockets as
following:
Channel 1: DDR3_P0_A0, DDR3_P0_A1 (For pimary CPU)
DDR3_P1_D0, DDR3_P1_D1 (For secondary CPU)
Channel 2: DDR3_P0_B0, DDR3_P0_B1(For pimary CPU)
DDR3_P1_E0, DDR3_P1_E1 (For secondary CPU)
Channel 3: DDR3_P0_C0, DDR3_P0_C1(For pimary CPU)
DDR3_P1_F0, DDR3_P1_F1 (For secondary CPU)
1-4 Installing the Memory
Read the following guidelines before you begin to install the memory:
•Make sure that the motherboard supports the memory. It is recommended that memory of the
same capacity, brand, speed, and chips be used.
•Always turn off the computer and unplug the power cord from the power outlet before installing
the memory to prevent hardware damage.
•Memory modules have a foolproof design. A memory module can be installed in only one
direction. If you are unable to insert the memory, switch the direction.
DDR3_P1_F1
DDR3_P1_F0
DDR3_P1_E1
DDR3_P1_E0
DDR3_P1_D1
DDR3_P1_D0
DDR3_P0_A0
DDR3_P0_A1
DDR3_P0_B1
DDR3_P0_B2
DDR3_P0_C1
DDR3_P0_C1
Single-Rank Single-Rank Single-Rank
Dual-Rank Dual-Rank Dual-Rank
Quad-Rank Quad-Rank Quad-Rank
R-DIMM
Channel 1 Channel 2 Channel 3
DDR3_P0_A0
DDR3_P0_A1
DDR3_P1_D0
DDR3_P1_D1
DDR3_P0_B0
DDR3_P0_B1
DDR3_P1_E0
DDR3_P1_E1
DDR3_P0_C0
DDR3_P0_C1
DDR3_P1_F0
DDR3_P1_F1
Single-Rank Single-Rank Single-Rank
Dual-Rank Dual-Rank Dual-Rank
U-DIMM
Channel 1 Channel 2 Channel 3
DDR3_P0_A0
DDR3_P0_A1
DDR3_P1_D0
DDR3_P1_D1
DDR3_P0_B0
DDR3_P0_B1
DDR3_P1_E0
DDR3_P1_E1
DDR3_P0_C0
DDR3_P0_C1
DDR3_P1_F0
DDR3_P1_F1
Due to CPU limitation, read the following guidelines before installing the memory in Dual or 3 Channel mode.
3 Channel--
1. 3 Channel mode cannot be enabled if only one or two DDR3 memory modules are installed.
2. When enabling 3 Channel mode with three, four or six modules, it is recommended that memory of
the same capacity, brand, speed, and chips be used. When enabling 3 Channel mode with three
memory modules, be sure to install them in the DDR3_P0_A0, DDR3_P0_B0 and DDR3_P0_C0
sockets for primary CPU; install DDR3_P1_D0, DDR3_P1_E0 DDR3_P1_F0 for secondary CPU.

- 15 -
Hardware Installation
1-4-2 Installing a Memory
Before installing a memory module, make sure to turn off the computer and unplug the power
cord from the power outlet to prevent damage to the memory module.
Be sure to install DDR3 DIMMs on this motherboard.
Installation Step:
Step 1. Insert the DIMM memory module vertically into the DIMM slot, and push it down.
Step 2. Close the plastic clip at both edges of the DIMM slots to lock the DIMM module.
Note: For dual-channel operation, DIMMs must be installed in matched pairs.
Step 3. Reverse the installation steps when you wish to remove the DIMM module.
2
2
1

Hardware Installation
- 16 -
1-5 Back Panel Connectors
Serial Port
Connects to serial-based mouse or data processing devices.
Video Port
The video in port allows connect to video in, which can also apply to video loop thru function.
RJ-45 LAN Ports (Gigabit Ethernet LAN Ports)
The Gigabit Ethernet LAN port provides Internet connection at up to 1 Gbps data rate. The following
describes the states of the LAN port LEDs.
USB 2.0/1.1 Port
The USB port supports the USB 2.0/1.1 specication. Use this port for USB devices such as a USB key-
board/mouse, USB printer, USB ash drive and etc.
KVM Server Management 10/100 LAN Port
The LAN port provides Internet connection with data transfer speeds of 10/100Mbps.
ID Switch Button
This button provide the selected unit idencation function.
Link
Activity LED
Link
Activity LED
Speed LED
Speed LED
10/100 LAN Port
10/100/1000 LAN Port
Link/Activity LED:
Link/Activity LED:
MLAN Speed LED:
I350 Speed LED:
State Description
Green On 100 Mbps data rate
Green Blink 10 Mbps or 100 Mbps
data rate
Off 10 Mbps data rate
State Description
Yellow On 1 Gbps data rate
Green On 100 Mbps data rate
Green Blink Identify 100 Mbps data
rate
Off 10 Mbps data rate
State Description
On Link between system and network or no
access
Blinking Data transmission or receiving is occurring
Off No data transmission or receiving is occurring
State Description
On Link between system and network or no
access
Blinking Data transmission or receiving is occurring
Off No data transmission or receiving is occurring
• When removing the cable connected to a back panel connector, rst remove the cable from your
device and then remove it from the motherboard.
• When removing the cable, pull it straight out from the connector. Do not rock it side to side to
prevent an electrical short inside the cable connector.

- 17 -
Hardware Installation
1-6 Internal Connectors
1) ATX1
2) P12V_AUX2
3) P12V_AUX1
4) P12V_CPU0
5) PMBUS_CN1
6) SATA0/SATA1
7) SATA2/SATA3/SATA4/SATA5
8) F_USB1
9) COM2
10) MINI_CN2
11) MINI_CN1
12) SKU_KEY1
13) RAID_KEY1
14) TPM_MEZZ1
15) BP_1
16) FP_1
17) SATA_SGPIO
18) IPMB1
19) BMC_LED1
20) BAT
21) CLR_CMOS1
22) BIOS_RVCR1
23) BIOS_WP
24) PASSWORD5
25) SSB_ME1
26) SSB_ME2
27) BMC_FRB3
28) S3_MASK
29) SATA_DOM0
30) SATA_DOM1
8
9
10 11
15
16
17
13
12
18
20
26
27
28
21
22
24
25
19 2
4
1
3
5
6
7
29 30
23
14

Hardware Installation
- 18 -
Read the following guidelines before connecting external devices:
• First make sure your devices are compliant with the connectors you wish to connect.
• Before installing the devices, be sure to turn off the devices and your computer. Unplug the power
cord from the power outlet to prevent damage to the devices.
• After installing the device and before turning on the computer, make sure the device cable has
been securely attached to the connector on the motherboard.

- 19 -
Hardware Installation
P12V_AUX2
DEBUG
PORT
G.QBOFM
15
48
13
13
24
24
1/2/3/4) ATX1/P12V_AUX2/P12V_AUX1/P12V_CPU0
(2x4 12V Power Connector and 2x12 Main Power Connector)
With the use of the power connector, the power supply can supply enough stable power to all the com-
ponents on the motherboard. Before connecting the power connector, rst make sure the power supply
is turned off and all devices are properly installed. The power connector possesses a foolproof design.
Connect the power supply cable to the power connector in the correct orientation. The 12V power con-
nector mainly supplies power to the CPU. If the 12V power connector is not connected, the computer will
not start.
To meet expansion requirements, it is recommended that a power supply that can withstand high
power consumption be used (500W or greater). If a power supply is used that does not provide the
required power, the result can lead to an unstable or unbootable system.
Pin No. Denition
1 GND
2 GND
3 GND
4 GND
5 P12V_DDR3_CPU1
6 P12V_DDR3_CPU1
7 P12V_CPU1
8 P12V_CPU1
P12V_AUX2 P12V_AUX1
P12V_CPU0
ATX1
P12V_AUX2
P12V_AUX1
P12V_CPU0
Pin No. Denition
1 GND
2 GND
3 P12V_DDR3_CPU0
4 P12V_DDR3_CPU0
Pin No. Denition
1 GND
2 GND
3 P12V_CPU0
4 P12V_CPU0

Hardware Installation
- 20 -
13
1
24
12
F_PANEL
F_PANEL
F_AUDIO
F_AUDIO
F_USB
COMB
MODEM
Smart Card Reader
SPDIF
AUX_IN
CD_IN
Secure Gigital /
Memory Stick
Serial ATA
F_USB
F_1394
CPU_FAN
SYS_FAN
PWR_FAN
NB_FAN
Power
WOL
SUR_CEN
IR/CIR
F_PANEL
F_PANEL
PWR_LED
CLR_CMOS
BIOS_WP
CLR_CMOS
BIOS_WP
CI
DPVRM
CLR_PWD
FDD
ATX
ATX_12V
IDE
IR
COMB
SPDIF_IO
F1_1394 F2_1394
GAME SMB_CONN F_AUDIO
(NEW)
F1_1394
ATX1
Pin No. Denition
13 3.3V
14 -12V
15 GND
16 PS_ON (soft On/Off)
17 GND
18 GND
19 GND
20 -5V
21 +5V
22 +5V
23 +5V (Only for 2x12-pin ATX)
24 GND (Only for 2x12-pin ATX)
Pin No. Denition
1 3.3V
2 3.3V
3 GND
4 +5V
5 GND
6 +5V
7 GND
8 Power Good
9 5VSB (stand by +5V)
10 +12V
11 +12V (Only for 2x12-pin ATX)
12 3.3V (Only for 2x12-pin ATX)
5) PMBUS_CN1 (PMBus connector)
Pin No. Denition
1 SMB CLK
2 SMB DATA
3 SMB Alert
4 GND
5 3.3V Sense
5
1