Supermicro SUPERSERVER 5018R-M User manual

SUPERSERVER®
5018R-M
5018R-MR
USER’S MANUAL
1.0a

The information in this User’s Manual has been carefully reviewed and is believed to be accurate.
The vendor assumes no responsibility for any inaccuracies that may be contained in this document,
makes no commitment to update or to keep current the information in this manual, or to notify any
person or organization of the updates. Please Note: For the most up-to-date version of this
manual, please see our web site at www.supermicro.com.
Super Micro Computer, Inc. ("Supermicro") reserves the right to make changes to the product
described in this manual at any time and without notice. This product, including software and docu-
mentation, is the property of Supermicro and/or its licensors, and is supplied only under a license.
Any use or reproduction of this product is not allowed, except as expressly permitted by the terms
of said license.
IN NO EVENT WILL SUPERMICRO BE LIABLE FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL,
SPECULATIVE OR CONSEQUENTIAL DAMAGES ARISING FROM THE USE OR INABILITY TO
USE THIS PRODUCT OR DOCUMENTATION, EVEN IF ADVISED OF THE POSSIBILITY OF
SUCH DAMAGES. IN PARTICULAR, SUPERMICRO SHALL NOT HAVE LIABILITY FOR ANY
HARDWARE, SOFTWARE, OR DATA STORED OR USED WITH THE PRODUCT, INCLUDING THE
COSTS OF REPAIRING, REPLACING, INTEGRATING, INSTALLING OR RECOVERING SUCH
HARDWARE, SOFTWARE, OR DATA.
Any disputes arising between manufacturer and customer shall be governed by the laws of Santa
Clara County in the State of California, USA. The State of California, County of Santa Clara shall
be the exclusive venue for the resolution of any such disputes. Super Micro's total liability for all
claims will not exceed the price paid for the hardware product.
FCC Statement: This equipment has been tested and found to comply with the limits for a Class A
digital device pursuant to Part 15 of the FCC Rules. These limits are designed to provide reasonable
protection against harmful interference when the equipment is operated in a commercial environ-
ment. This equipment generates, uses, and can radiate radio frequency energy and, if not installed
and used in accordance with the manufacturer’s instruction manual, may cause harmful interference
with radio communications. Operation of this equipment in a residential area is likely to cause harmful
interference, in which case you will be required to correct the interference at your own expense.
California Best Management Practices Regulations for Perchlorate Materials: This Perchlorate warn-
ing applies only to products containing CR (Manganese Dioxide) Lithium coin cells. “Perchlorate
Material-special handling may apply. See www.dtsc.ca.gov/hazardouswaste/perchlorate”
WARNING: Handling of lead solder materials used in this
product may expose you to lead, a chemical known to the
State of California to cause birth defects and other repro-
ductive harm.
Manual Revision 1.0a
Release Date: October 19, 2016
Unless you request and receive written permission from Super Micro Computer, Inc., you may not
copy any part of this document.
Information in this document is subject to change without notice. Other products and companies
referred to herein are trademarks or registered trademarks of their respective companies or mark
holders.
Copyright © 2016 by Super Micro Computer, Inc.
All rights reserved.
Printed in the United States of America

iii
Preface
Preface
About This Manual
This manual is written for professional system integrators and PC technicians.
It provides information for the installation and use of the SuperServer 5018R-
M/5018R-MR. Installation and maintenance should be performed by experienced
technicians only.
The SuperServer 5018R-M/5018R-MR is a high-end server based on the
SC813MTQ-350CB/SC813MTQ-R400CB 1U rackmount chassis and the Super
X10SRi-F single processor motherboard.
Manual Organization
Chapter 1: Introduction
The rst chapter provides a checklist of the main components included with the
server system and describes the main features of the X10SRi-F motherboard and
the SC813MTQ-350CB/SC813MTQ-R400CB chassis.
Chapter 2: Server Installation
This chapter describes the steps necessary to install the SuperServer 5018R-
M/5018R-MR into a rack and check out the server conguration prior to powering
up the system. If your server was ordered without processor and memory compo-
nents, this chapter will refer you to the appropriate sections of the manual for their
installation.
Chapter 3: System Interface
Refer here for details on the system interface, which includes the functions and
information provided by the control panel on the chassis as well as other LEDs
located throughout the system.
Chapter 4: Standardized Warning Statements
You should thoroughly familiarize yourself with this chapter for a general overview
of safety precautions that should be followed when installing and servicing the
SuperServer 5018R-M/5018R-MR.

SUPERSERVER 5018R-M/5018R-MR User's Manual
iv
Chapter 5: Advanced Motherboard Setup
Chapter 5 provides detailed information on the X10SRi-F motherboard, including the
locations and functions of connections, headers and jumpers. Refer to this chapter
when adding or removing processors or main memory and when reconguring the
motherboard.
Chapter 6: Advanced Chassis Setup
Refer to Chapter 6 for detailed information on the SC813MTQ-350CB/SC813MTQ-
R400CB server chassis. You should follow the procedures given in this chapter when
installing, removing or reconguring SATA or peripheral drives and when replacing
system power supply modules and cooling fans.
Chapter 7: BIOS
The BIOS chapter includes an introduction to BIOS and provides detailed informa-
tion on running the CMOS Setup Utility.
Appendix A: BIOS Error Beep Codes
Appendix B: System Specications

v
Preface
Notes

vi
Table of Contents
Chapter 1 Introduction
1-1 Overview ......................................................................................................... 1-1
1-2 Motherboard Features..................................................................................... 1-2
Processors ...................................................................................................... 1-2
Memory ........................................................................................................... 1-2
Serial ATA........................................................................................................ 1-2
I/O Ports.......................................................................................................... 1-2
Graphics Controller ......................................................................................... 1-2
1-3 Server Chassis Features ................................................................................ 1-3
System Power................................................................................................. 1-3
SATA Subsystem............................................................................................. 1-3
Control Panel .................................................................................................. 1-3
Cooling Fans................................................................................................... 1-3
1-4 Contacting Supermicro.................................................................................... 1-5
Chapter 2 Server Installation
2-1 Overview ......................................................................................................... 2-1
2-2 Unpacking the System .................................................................................... 2-1
2-3 Preparing for Setup......................................................................................... 2-1
Choosing a Setup Location............................................................................. 2-1
2-4 Warnings and Precautions.............................................................................. 2-2
Rack Precautions............................................................................................ 2-2
Server Precautions.......................................................................................... 2-2
Rack Mounting Considerations ....................................................................... 2-3
Ambient Operating Temperature ................................................................ 2-3
Reduced Airow ......................................................................................... 2-3
Mechanical Loading ................................................................................... 2-3
Circuit Overloading..................................................................................... 2-3
Reliable Ground ......................................................................................... 2-3
2-5 Installing the System into a Rack ................................................................... 2-4
Identifying the Sections of the Rack Rails...................................................... 2-4
Installing the Rear Inner Rails ........................................................................ 2-4
Installing the Rack Rails ................................................................................. 2-5
Installing the Server into the Rack.................................................................. 2-6
Installing the Server into a Telco Rack ........................................................... 2-7
Chapter 3 System Interface
3-1 Overview ......................................................................................................... 3-1
SUPERSERVER 5018R-M/5018R-MR User's Manual

vii
Table of Contents
3-2 Control Panel Buttons ..................................................................................... 3-1
Reset............................................................................................................... 3-1
Power .............................................................................................................. 3-1
3-3 Control Panel LEDs ........................................................................................ 3-2
Overheat/Fan Fail ........................................................................................... 3-2
NIC2 ................................................................................................................ 3-2
NIC1 ................................................................................................................ 3-2
HDD................................................................................................................. 3-2
Power .............................................................................................................. 3-3
3-4 Hard Drive Carrier LEDs................................................................................. 3-3
Chapter 4 Standardized Warning Statements for AC Systems
4-1 About Standardized Warning Statements....................................................... 4-1
Warning Denition........................................................................................... 4-1
Installation Instructions.................................................................................... 4-4
Circuit Breaker ................................................................................................ 4-5
Power Disconnection Warning ........................................................................ 4-6
Equipment Installation..................................................................................... 4-8
Restricted Area................................................................................................ 4-9
Battery Handling............................................................................................ 4-10
Redundant Power Supplies .......................................................................... 4-12
Backplane Voltage ........................................................................................ 4-13
Comply with Local and National Electrical Codes........................................ 4-14
Product Disposal........................................................................................... 4-15
Hot Swap Fan Warning................................................................................. 4-16
Power Cable and AC Adapter ...................................................................... 4-18
Chapter 5 Advanced Motherboard Setup
5-1 Handling the Motherboard .............................................................................. 5-1
Precautions ..................................................................................................... 5-1
Unpacking ....................................................................................................... 5-1
5-2 Processor and Heatsink Installation................................................................ 5-2
Installing an LGA2011 Processor.................................................................... 5-2
Installing a Passive CPU Heatsink ................................................................. 5-5
Removing the Heatsink................................................................................... 5-5
5-3 Connecting Cables.......................................................................................... 5-6
Connecting Data Cables ................................................................................. 5-6
Connecting Power Cables .............................................................................. 5-6
Connecting the Control Panel......................................................................... 5-6
5-4 I/O Ports.......................................................................................................... 5-7

viii
SUPERSERVER 5018R-M/5018R-MR User's Manual
5-5 Installing Memory............................................................................................ 5-8
5-6 Adding PCI Cards ......................................................................................... 5-10
5-7 Motherboard Details.......................................................................................5-11
X10SRi-F Quick Reference............................................................................5-11
5-8 Connector Denitions ................................................................................... 5-13
5-9 Jumper Settings ............................................................................................ 5-19
5-10 Onboard Indicators........................................................................................ 5-22
5-11 SATA Ports .................................................................................................... 5-23
5-12 Installing Software......................................................................................... 5-24
SuperDoctor® 5 ............................................................................................ 5-25
5-13 Onboard Battery............................................................................................ 5-26
Chapter 6 Advanced Chassis Setup
6-1 Static-Sensitive Devices.................................................................................. 6-1
Precautions ..................................................................................................... 6-1
Unpacking ....................................................................................................... 6-1
6-2 Control Panel .................................................................................................. 6-2
6-3 Accessing the System..................................................................................... 6-2
6-4 System Fans ................................................................................................... 6-3
6-5 Drive Bay Installation/Removal ....................................................................... 6-4
Accessing the Drive Bays ............................................................................... 6-4
SATA Drive Installation.................................................................................... 6-5
SATA Backplane.............................................................................................. 6-5
6-6 Power Supply.................................................................................................. 6-8
5018R-M Power .............................................................................................. 6-8
Chapter 7 BIOS
7-1 Introduction...................................................................................................... 7-1
Starting BIOS Setup Utility.............................................................................. 7-1
How To Change the Conguration Data ......................................................... 7-1
How to Start the Setup Utility ......................................................................... 7-2
7-2 Main Setup...................................................................................................... 7-2
7-3 Advanced Setup Congurations...................................................................... 7-4
7-4 Event Logs .................................................................................................... 7-33
7-5 IPMI............................................................................................................... 7-35
7-6 Security Settings ........................................................................................... 7-38
7-7 Boot Settings................................................................................................. 7-39
7-8 Save & Exit ................................................................................................... 7-41
Appendix A BIOS Error Beep Codes
Appendix B System Specications

Chapter 1
Introduction
1-1 Overview
The SuperServer 5018R-M/5018R-MR is a high-end server comprised of two
main subsystems: the SC813MTQ-350CB/SC813MTQ-R400CB 1U server chassis
and the X10SRi-F single processor motherboard. Please refer to our web site for
information on operating systems that have been certied for use with the system
(www.supermicro.com).
In addition to the motherboard and chassis, various hardware components have
been included with the 5018R-M/5018R-MR, as listed below:
• Four 4-cm fans (FAN-0065L4)
• One passive CPU heatsink (SNK-P0047PS)
• One air shroud (MCP-310-19007-0N)
• One riser card for one PCI-E 3.0 x16 PCI add-on card in a PCI-E 3.0 x16 slot
(RSC-RR1U-E16)
• One rackmount kit (CSE-PT52)
Note: For your system to work properly, please follow the links below to download
all necessary drivers/utilities and the user’s manual for your server.
• Supermicro product manuals: http://www.supermicro.com/support/manuals/
• Product drivers and utilities: ftp://ftp.supermicro.com
• Product safety info: http://www.supermicro.com/about/policies/safety_informa-
tion.cfm
• If you have any questions, please contact our support team at:
[email protected]
Chapter 1: Introduction
1-1

1-2
SUPERSERVER 5018R-M/5018R-MR User's Manual
1-2 Motherboard Features
At the heart of the SuperServer 5018R-M/5018R-MR lies the X10SRi-F, a single
processor motherboard based on the Intel® C612 Express chipset. Below are the
main features of the X10SRi-F (see Figure 1-1 for a block diagram of the chipset).
Processors
The X10SRi-F supports a single Intel® Xeon® processor E5-2600 v3/v4 or E5-1600
v3/v4 family in an LGA2011 socket. Please refer to the motherboard description
pages on our website for a complete listing of supported processors.
Memory
The X10SRi-F has eight DIMM sockets that can support up to 1 TB of ECC 3DS
LRDIMM (Load-Reduced DIMM), 512 GB of ECC LRDIMM or 256 GB of ECC
RDIMM (Registered DIMMs) DDR4-2400/2133/1866/1600 memory. Please refer to
Chapter 5 for installing memory.
Serial ATA
A SATA controller is integrated into the C612 chipset to support ten SATA 3.0 (6
Gb/s) ports. RAID 0, 1, 5 and 10 levels supported.
I/O Ports
The rear I/O ports include one COM port, a VGA (monitor) port, two USB 3.0 ports,
two USB 2.0 ports, and two gigabit Ethernet ports. A dedicated IPMI LAN port is
also included.
Graphics Controller
The X10SRi-F features an integrated AST 2400 graphics controller.

1-3
Chapter 1: Introduction
1-3 Server Chassis Features
The SC813MTQ-350CB/SC813MTQ-R400CB is a 1U rackmount server chassis.
The following is a general outline of the main features of the chassis.
System Power
When congured as a SuperServer 5018R-M, the SC813MTQ chassis includes
a single 350W power supply. When congured as a SuperServer 5018R-MR, the
SC813MTQ includes two (redundant) 400W power supplies.
SATA Subsystem
For the 5018R-M/5018R-MR, the SC813MTQ chassis was designed to support
four SATA hard drives, which are hot-swappable units.
Control Panel
The SC813MTQ's control panel provides important system monitoring and control
information. LEDs indicate power on, network activity, hard disk drive activity and
system overheat conditions. The control panel also includes a main power button
and a system reset button. The front of the SC813MTQ also includes a COM port
and two USB serial ports for easy access.
Cooling Fans
The SC813MTQ chassis has an innovative cooling design that features four 4-cm
high-performance cooling fans. Each of these fans plug into a fan header on the
motherboard.
Fan speed is controlled by IPMI and determined by system temperature.

1-4
SUPERSERVER 5018R-M/5018R-MR User's Manual
Figure 1-1. Intel C612 Express Chipset:
System Block Diagram
Note: This is a general block diagram. Please see Chapter 5 for details.
SPI
LAN3
RGRMII
Debug Card
FRONT PANEL
SYSTEM POWER
CTRL
FAN SPEED
PCI-E X1 Gen2
USB 2.0
13 USB2.0
1/2/3/4
PCH
6.0 Gb/S
USB 2.0
LPC
USB
1
0
SATA
5
4
RTL8211E-VB-CG
3
2
RJ45
BIOS
SPI
SPI
Temp Sensor
EMC1402-1 *2 at diff SMBUS
TPM HEADER
USB 3.0
USB
BIOS
HEADER
SPI
AST2400
BMC
5/6
7
RMII/NCSI
COM1
Connector COM2 Header
VGA CONN
BMC BootFlash
DDR3
5 PHASE
145W
VR12.5
PCI-E X8 Gen3
DMI2
PCI-E X8 Gen3
PCI-E X4 Gen3
DMI2
Skt-R3
LGA2011-3
3A/B
i350
LAN
PCI-E X4 Gen2
6789
0-4
0-3
0-2
0-1
DDRIV DDRIV
0-8
0-7
0-6
0-5
3D
SLOT5PCIe3.0 x8
(x4 in x8)
PCIe3.0 x8
SLOT4
SLOT3PCIe3.0 x8
PCI-E X16 Gen3
SLOT2
PCIe2.0 x8
(x4 in x8)
PCI-E X4 Gen2
PCI-E X2 Gen2
SLOT1
PCIe2.0 x8
(x2 in x8)
1
2
5
6
01234567
RJ45
RJ45
1 3C 2
SLOT6
PCIe3.0 x16

1-5
Chapter 1: Introduction
1-4 Contacting Supermicro
Headquarters
Address: Super Micro Computer, Inc.
980 Rock Ave.
San Jose, CA 95131 U.S.A.
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
Web Site: www.supermicro.com
Europe
Address: Super Micro Computer B.V.
Het Sterrenbeeld 28, 5215 ML
's-Hertogenbosch, The Netherlands
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
[email protected] (Customer Support)
Web Site: www.supermicro.nl
Asia-Pacic
Address: Super Micro Computer, Inc.
3F, No. 150, Jian 1st Rd.
Zhonghe Dist., New Taipei City 235
Taiwan (R.O.C)
Tel: [phone]
Fax: [phone]
Email: [email protected]
Web Site: www.supermicro.com.tw

1-6
SUPERSERVER 5018R-M/5018R-MR User's Manual
Notes

Chapter 2: Server Installation
2-1
Chapter 2
Server Installation
2-1 Overview
This chapter provides a quick setup checklist to get your SuperServer 5018R-
M/5018R-MR up and running. Following the steps in the order given should enable
you to have the system operational within a minimal amount of time. This quick
setup assumes that your system has come to you with the processor and memory
preinstalled. If your system is not already fully integrated with a motherboard, pro-
cessor, system memory etc., please turn to the chapter or section noted in each
step for details on installing specic components.
2-2 Unpacking the System
You should inspect the box the 5018R-M/5018R-MR was shipped in and note if
it was damaged in any way. If the server itself shows damage, you should le a
damage claim with the carrier who delivered it.
Decide on a suitable location for the rack unit that will hold the system. It should
be situated in a clean, dust-free area that is well ventilated. Avoid areas where
heat, electrical noise and electromagnetic elds are generated. You will also need
it placed near a grounded power outlet. Read the Rack and Server Precautions in
the next section.
2-3 Preparing for Setup
The box the system was shipped in should include two sets of rail assemblies, six
rail mounting brackets and the mounting screws you will need to install the system
into the rack. Follow the steps in the order given to complete the installation process
in a minimal amount of time. Please read this section in its entirety before you begin
the installation procedure outlined in the sections that follow.
Choosing a Setup Location
• Leave enough clearance in front of the rack to enable you to open the front door
completely (~25 inches) and approximately 30 inches of clearance in the back
of the rack to allow for sufcient airow and ease in servicing.This product is for

2-2
SUPERSERVER 5018R-M/5018R-MR User's Manual
installation only in a Restricted Access Location (dedicated equipment rooms,
service closets and the like).
• This product is not suitable for use with visual display work place devices
acccording to §2 of the German Ordinance for Work with Visual Display Units.
2-4 Warnings and Precautions
Rack Precautions
• Ensure that the leveling jacks on the bottom of the rack are fully extended to
the oor with the full weight of the rack resting on them.
• In single rack installation, stabilizers should be attached to the rack. In multiple
rack installations, the racks should be coupled together.
• Always make sure the rack is stable before extending a component from the
rack.
• You should extend only one component at a time - extending two or more si-
multaneously may cause the rack to become unstable.
Server Precautions
• Review the electrical and general safety precautions in Chapter 4.
• Determine the placement of each component in the rack before you install the
rails.
• Install the heaviest server components on the bottom of the rack rst, and then
work up.
• Use a regulating uninterruptible power supply (UPS) to protect the server from
power surges, voltage spikes and to keep your system operating in case of a
power failure.
• Allow the hot plug SATA drives and power supply modules to cool before touch-
ing them.
• Always keep the rack's front door and all panels and components on the servers
closed when not servicing to maintain proper cooling.

Chapter 2: Server Installation
2-3
Rack Mounting Considerations
Ambient Operating Temperature
If installed in a closed or multi-unit rack assembly, the ambient operating tempera-
ture of the rack environment may be greater than the ambient temperature of the
room. Therefore, consideration should be given to installing the equipment in an
environment compatible with the manufacturer’s maximum rated ambient tempera-
ture (Tmra).
Reduced Airow
Equipment should be mounted into a rack so that the amount of airow required
for safe operation is not compromised.
Mechanical Loading
Equipment should be mounted into a rack so that a hazardous condition does not
arise due to uneven mechanical loading.
Circuit Overloading
Consideration should be given to the connection of the equipment to the power
supply circuitry and the effect that any possible overloading of circuits might have
on overcurrent protection and power supply wiring. Appropriate consideration of
equipment nameplate ratings should be used when addressing this concern.
Reliable Ground
A reliable ground must be maintained at all times. To ensure this, the rack itself
should be grounded. Particular attention should be given to power supply connec-
tions other than the direct connections to the branch circuit (i.e. the use of power
strips, etc.).
Warning! To prevent bodily injury when mounting or servicing this unit in a
rack, you must take special precautions to ensure that the system remains
stable. The following guidelines are provided to ensure your safety:
• This unit should be mounted at the bottom of the rack if it is the only unit in
the rack.
• When mounting this unit in a partially lled rack, load the rack from the bottom
to the top with the heaviest component at the bottom of the rack.
• If the rack is provided with stabilizing devices, install the stabilizers before
mounting or servicing the unit in the rack.

2-4
SUPERSERVER 5018R-M/5018R-MR User's Manual
2-5 Installing the System into a Rack
This section provides information on installing the SuperServer 5018R-M/5018R-MR
into a rack unit with the rack rails provided. If the server has already been mounted
into a rack, you can skip ahead to Sections 2-5 and 2-6.
There are a variety of rack units on the market, which may mean the assembly
procedure will differ slightly. You should also refer to the installation instructions that
came with the rack unit you are using.
Identifying the Sections of the Rack Rails
You may have received rack rail hardware with the SuperServer 5018R-M/5018R-
MR. (Two front inner rails should already be attached to the chassis.) This hardware
consists of two rear inner rails that secure to the chassis, one on each side just be-
hind the preinstalled front inner rails. Note that these two rails are left/right specic.
Installing the Rear Inner Rails
First, locate the right rear inner rail (the rail that will be used on the right side of
the chassis when you face the front of the chassis). Align the two square holes on
the rail against the hooks on the right side of the chassis. Securely attach the rail
to the chassis with M4 at head screws. Repeat these steps to install the left rear
inner rail to the left side of the chassis (see Figure 2-1). You will also need to attach
the rail brackets when installing into a telco rack.
Locking Tabs: Both chassis rails have a locking tab, which serves two functions.
The rst is to lock the server into place when installed and pushed fully into the
rack, which is its normal position. Secondly, these tabs also lock the server in place
when fully extended from the rack. This prevents the server from coming completely
out of the rack when you pull it out for servicing.

Chapter 2: Server Installation
2-5
Installing the Rack Rails
Determine where you want to place the SuperServer 5018R-M/5018R-MR in the
rack (see Rack and Server Precautions in Section 2-3). Position the chassis rail
guides at the desired location in the rack, keeping the sliding rail guide facing the
inside of the rack. Screw the assembly securely to the rack using the brackets
provided. Attach the other assembly to the other side of the rack, making sure that
both are at the exact same height and with the rail guides facing inward.
Figure 2-1. Installing Rear Inner Chassis Rails
Warning: do not pick up the server with the front handles. They are de-
signed to pull the system from a rack only.

2-6
SUPERSERVER 5018R-M/5018R-MR User's Manual
Figure 2-2. Installing the Server into a Rack
(with optional front bezel shown)
Installing the Server into the Rack
You should now have rails attached to both the chassis and the rack unit. The next
step is to install the server into the rack. Do this by lining up the rear of the chassis
rails with the front of the rack rails. Slide the chassis rails into the rack rails, keeping
the pressure even on both sides (you may have to depress the locking tabs when
inserting). See Figure 2-2.
When the server has been pushed completely into the rack, you should hear the
locking tabs "click".
Stability hazard. The rack stabilizing mechanism must be in place, or the
rack must be bolted to the oor before you slide the unit out for servicing.
Failure to stabilize the rack can cause the rack to tip over.
Note: gures are for illustrative purposes only. Always install servers starting from
the bottom of a rack rst.