Supero 5025M-4 Plus User manual

SUPERSERVER 5025M-4+
S
UPERSERVER 5025M-i+
USER’S MANUAL
1.0
SUPER

The information in this User’s Manual has been carefully reviewed and is believed to be accurate.
The vendor assumes no responsibility for any inaccuracies that may be contained in this document,
makes no commitment to update or to keep current the information in this manual, or to notify any
person or organization of the updates. Please Note: For the most up-to-date version of
this manual, please see our web site at www.supermicro.com.
SUPERMICRO COMPUTER reserves the right to make changes to the product described in this
manual at any time and without notice. This product, including software, if any, and documenta-
tion may not, in whole or in part, be copied, photocopied, reproduced, translated or reduced to any
medium or machine without prior written consent.
IN NO EVENT WILL SUPERMICRO COMPUTER BE LIABLE FOR DIRECT, INDIRECT, SPECIAL,
INCIDENTAL, SPECULATIVE OR CONSEQUENTIAL DAMAGES ARISING FROM THE USE
OR INABILITY TO USE THIS PRODUCT OR DOCUMENTATION, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES. IN PARTICULAR, THE VENDOR SHALL NOT HAVE
LIABILITY FOR ANY HARDWARE, SOFTWARE, OR DATA STORED OR USED WITH THE
PRODUCT, INCLUDING THE COSTS OF REPAIRING, REPLACING, INTEGRATING, INSTALLING
OR RECOVERING SUCH HARDWARE, SOFTWARE, OR DATA.
Any disputes arising between manufacturer and customer shall be governed by the laws of Santa
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be the exclusive venue for the resolution of any such disputes. Supermicro's total liability for all
claims will not exceed the price paid for the hardware product.
Unless you request and receive written permission from SUPER MICRO COMPUTER, you may not
copy any part of this document.
Information in this document is subject to change without notice. Other products and companies
referred to herein are trademarks or registered trademarks of their respective companies or mark
holders.
Copyright © 2005 by SUPER MICRO COMPUTER INC.
All rights reserved.
Printed in the United States of America
Manual Revision 1.0
Release Date: September 12, 2006

Preface
About This Manual
This manual is written for professional system integrators and PC technicians.
It provides information for the installation and use of the SuperServer 5025M-
4+/5025M-i+. Installation and maintainance should be performed by experienced
technicians only.
The SuperServer 5025M-4+/5025M-i+ is a high-end, dual Pentium processor
rackmount server based on the SC823S-550LP/SC823i-550LP 2U rackmount
server chassis and the PDSM4+/PDSME+ motherboard, which supports single
Intel PentiumD, Pentium4 or CeleronD type processors. Refer to the motherboard
specifications pages on our web site for updates on supported processors.
Manual Organization
Chapter 1: Introduction
The first chapter provides a checklist of the main components included with the serv-
er system and describes the main features of the PDSM4+/PDSME+ motherboard
and the SC823S-550LP/SC823i-550LP chassis, which make up the SuperServer
5025M-4+/5025M-i+.
Chapter 2: Server Installation
This chapter describes the steps necessary to install the SuperServer 5025M-
4+/5025M-i+ into a rack and check out the server configuration prior to powering
up the system. If your server was ordered without processor and memory com-
ponents, this chapter will refer you to the appropriate sections of the manual for
their installation.
Chapter 3: System Interface
Refer here for details on the system interface, which includes the functions and
information provided by the control panel on the chassis as well as other LEDs
located throughout the system.
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Preface

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iv
Chapter 4: System Safety
You should thoroughly familiarize yourself with this chapter for a general overview
of safety precautions that should be followed when installing and servicing the
SuperServer 5025M-4+/5025M-i+.
Chapter 5: Advanced Motherboard Setup
Chapter 5 provides detailed information on the PDSM4+/PDSME+ motherboard,
including the locations and functions of connectors, headers and jumpers. Refer
to this chapter when adding or removing processors or main memory and when
reconfiguring the motherboard.
Chapter 6: Advanced Chassis Setup
Refer to Chapter 6 for detailed information on the SC823S-550LP/SC823i-550LP
2U server chassis. You should follow the procedures given in this chapter when
installing, removing or reconfiguring SCSI or peripheral drives and when replacing
the system power supply unit and cooling fans.
Chapter 7: BIOS
The BIOS chapter includes an introduction to BIOS and provides detailed informa-
tion on running the CMOS Setup Utility.
Appendix A: BIOS POST Messages
Appendix B: BIOS POST Codes
Appendix C: Software Installation
Appendix D: Adaptec HostRAID Setup Guidelines
Appendix E: System Specifications

v
Preface
Notes

SUPERSERVER 5025M-4+/5025M-i+ User's Manual
vi
Table of Contents
Preface
About This Manual ...................................................................................................... iii
Manual Organization ................................................................................................... iii
Chapter 1: Introduction
1-1 Overview ......................................................................................................... 1-1
1-2 Motherboard Features .................................................................................... 1-2
1-3 Server Chassis Features ................................................................................ 1-5
1-4 Contacting Supermicro ................................................................................... 1-7
Chapter 2: Server Installation
2-1 Overview ......................................................................................................... 2-1
2-2 Unpacking the System ................................................................................... 2-1
2-3 Preparing for Setup ........................................................................................ 2-1
Choosing a Setup Location .................................................................... 2-2
Rack Precautions .................................................................................... 2-2
Server Precautions ................................................................................. 2-2
Rack Mounting Considerations ................................................................ 2-3
2-4 Installing the System into a Rack ................................................................... 2-4
Identifying the Sections of the Rack Rails .............................................. 2-4
Installing the Chassis Rails ...................................................................... 2-5
Installing the Rack Rails .......................................................................... 2-5
Installing the Server into the Rack ........................................................... 2-6
Installing the Server into a Telco Rack .................................................... 2-7
2-5 Checking the Motherboard Setup .................................................................. 2-8
2-6 Checking the Drive Bay Setup ....................................................................... 2-9
Chapter 3: System Interface
3-1 Overview ......................................................................................................... 3-1
3-2 Control Panel Buttons .................................................................................... 3-1
Reset ........................................................................................................ 3-1
Power ....................................................................................................... 3-1
3-3 Control Panel LEDs ........................................................................................ 3-2
Overheat/Fan Fail .................................................................................... 3-2
NIC2 ......................................................................................................... 3-2
NIC1 ......................................................................................................... 3-2
HDD .......................................................................................................... 3-2

Power ...................................................................................................... 3-3
3-4 SCSI Drive Carrier LEDs ................................................................................ 3-3
Chapter 4: System Safety
4-1 Electrical Safety Precautions .......................................................................... 4-1
4-2 General Safety Precautions ........................................................................... 4-2
4-3 ESD Precautions ............................................................................................ 4-3
4-4 Operating Precautions .................................................................................... 4-4
Chapter 5: Advanced Motherboard Setup
5-1 Handling the Motherboard .............................................................................. 5-1
5-2 Motherboard Installation ................................................................................. 5-2
5-3 Connecting Cables ......................................................................................... 5-3
Connecting Data Cables .......................................................................... 5-3
Connecting Power Cables ....................................................................... 5-3
Connecting the Control Panel .................................................................. 5-3
5-4 I/O Ports ......................................................................................................... 5-4
5-5 Installling the Processor and Heatsink ........................................................... 5-5
5-6 Installing Memory ........................................................................................... 5-8
5-7 Adding PCI Add-On Cards ............................................................................. 5-9
5-8 Motherboard Details ..................................................................................... 5-10
PDSM4+/PDSME+ Layout .................................................................... 5-10
PDSM4+/PDSME+ Quick Reference .................................................... 5-11
5-9 Connector Definitions ................................................................................... 5-12
Main ATX Power Connector ................................................................... 5-12
Processor Power Connector .................................................................. 5-12
PW_ON Connector ................................................................................ 5-12
Reset Connector .................................................................................... 5-12
Overheat LED ........................................................................................ 5-13
NIC2 LED ............................................................................................... 5-13
NIC1 LED ............................................................................................... 5-13
IDE/SATA LED ........................................................................................ 5-13
Power On LED ....................................................................................... 5-14
NMI Button ............................................................................................. 5-14
Fan Headers .......................................................................................... 5-14
ATX PS/2 Keyboard & Mouse Ports ...................................................... 5-14
Chassis Intrusion .................................................................................... 5-15
Wake-On-LAN ........................................................................................ 5-15
Wake-On-Ring ........................................................................................ 5-15
LAN (Ethernet) Ports .............................................................................. 5-15
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viii
Serial Ports ............................................................................................. 5-16
Power LED ............................................................................................. 5-16
Universal Serial Bus (USB) Ports/Headers ............................................ 5-16
5-10 Jumper Settings ............................................................................................ 5-17
Explanation of Jumpers ......................................................................... 5-17
CMOS Clear ........................................................................................... 5-17
Speaker Connector ................................................................................ 5-17
Watch Dog Enable/Disable .................................................................... 5-18
JLAN1/2 Enable/Disable ......................................................................... 5-18
SMBus to PCI ........................................................................................ 5-18
System Power Force On ........................................................................ 5-19
VGA Enable/Disable ............................................................................... 5-19
SCSI Controller Enable/Disable ............................................................. 5-19
SCSI Termination Enable/Disable .......................................................... 5-19
USB Wake-Up ........................................................................................ 5-20
Keyboard Wake-Up ................................................................................ 5-20
5-11 Onboard Indicators ....................................................................................... 5-20
LAN LEDs .............................................................................................. 5-20
5-12 Floppy, IDE, SCSI and SATA Drive Connections ......................................... 5-21
Floppy Connector ................................................................................... 5-21
IDE Connector ........................................................................................ 5-22
SATA Connectors ................................................................................... 5-22
SCSI Connector ..................................................................................... 5-23
Chapter 6: Advanced Chassis Setup
6-1 Static-Sensitive Devices ................................................................................. 6-1
6-2 Control Panel .................................................................................................. 6-3
6-3 System Fans ................................................................................................... 6-3
System Fan Failure .................................................................................. 6-3
Replacing System Cooling Fans .............................................................. 6-3
6-4 Drive Bay Installation/Removal ...................................................................... 6-4
Accessing the Drive Bays ........................................................................ 6-4
SCSI Drive Installation ............................................................................. 6-5
IDE Drive Installation ............................................................................... 6-8
Installing a Component in the 5 1/4" Drive Bay ...................................... 6-8
CD-ROM and Floppy Drive Installation .................................................... 6-9
6-5 Power Supply ............................................................................................... 6-10
Power Supply Failure ............................................................................. 6-10
Removing/Replacing the Power Supply ................................................. 6-10

Table of Contents
ix
Chapter 7: BIOS
7-1 Introduction ..................................................................................................... 7-1
7-2 Running Setup ................................................................................................ 7-2
7-3 Main BIOS Setup ............................................................................................ 7-2
7-4 Advanced Setup ............................................................................................. 7-7
7-5 Security ......................................................................................................... 7-21
7-6 Boot .............................................................................................................. 7-22
7-7 Exit ................................................................................................................ 7-23
Appendices:
Appendix A: BIOS POST Messages ........................................................................ A-1
Appendix B: BIOS POST Codes .............................................................................. B-1
Appendix C: Software Installation ........................................................................... C-1
Appendix D: Adaptec HostRAID Setup Guidelines ................................................. D-1
Appendix E: System Specifications ......................................................................... E-1

SUPERSERVER 5025M-4+/5025M-i+ User's Manual
x
Notes

Chapter 1
Introduction
1-1 Overview
The Supermicro SuperServer 5025M-4+/5025M-i+ is a high-end, 2U rackmount
server that features some of the most advanced technology currently available.
The SuperServer 5025M-4+/5025M-i+ is comprised of two main subsystems: the
SC823S-550LP/SC823i-550LP 2U chassis and the PDSM4+/PDSME+ Pentium
processor motherboard. Please refer to our web site for information on operating
systems that have been certified for use with the SuperServer 5025M-4+/5025M-i+.
(www.supermicro.com)
In addition to the motherboard and chassis, various hardware components may have
been included with your SuperServer 5025M-4+/5025M-i+, as listed below:
 One (1) 3.5" floppy drive [FPD-PNSC-02(01)]
 One (1) slim CD-ROM drive [CDM-TEAC-24(B)]
 Four (4) 8-cm chassis cooling fans (FAN-0070)
 Rackmount hardware (with screws):
Two (2) rack rail assemblies
Six (6) brackets for mounting the rack rails to a rack/telco rack
 SCSI Accessories (5025M-4+ only):
Six (6) SCA drive carriers [CSE-PT17(B)]
One (1) SCA SAF-TE compliant SCSI backplane (CSE-SCA-822S)
One (1) internal 68-pin Ultra320/160 SCSI cable (CBL-033L-U320)
 SCSI Accessories (5025M-i+ only):
Two (2) hard drive carriers supporting up to 6 hard drives [CSE-PT18(B)]
One (1) SATA power cable (CBL-0082)
Four (4) SATA data cables (CBL-0044)
 One (1) active heatsink, optional (SNK-P0015A4)
Chapter 1: Introduction
1-1

SUPERSERVER 5025M-4/5024M-i Manual
1-2
 One (1) CD containing drivers and utilities
 SuperServer 5025M-4+/5025M-i+ User's Manual
1-2 Motherboard Features
At the heart of the SuperServer 5025M-4+/5025M-i+ lies the PDSM4+/PDSME+, a
single Intel Pentium processor motherboard based on the Intel® 3010 chipset and
designed to provide maximum performance. Below are the main features of the
PDSM4+/PDSME+. (See Figure 1-1 for a block diagram of the chipset.)
Processors
The PDSM4+/PDSME+ supports single a Intel E6000 & E4000 sequence, Penti-
umD (Dual-Core), Pentium4 Extreme Edition, Pentium 4, Pentium Extreme Edition
or CeleronD LGA775 processor at system bus speeds of 1066, 800 and 533 MHz.
Please refer to the motherboard specifications pages on our web site for updates
on supported processors.
Memory
The PDSM4+/PDSME+ has four 240-pin DIMM slots that can support up to 8 GB
of unbuffered ECC/non-ECC DDR2-667/533/400 SDRAM.
Onboard SCSI (5025M-4+ only)
Onboard SCSI is provided with an Adaptec AIC-7901 SCSI controller chip, which
supports dual channel, Ultra320 SCSI at a burst throughput rate of 320 MB/sec.
The PDSM4 provides two SCSI ports.
PCI Expansion Slots
The PDSM4+/PDSME+ has one PCI-Express x8 slot, one PCI-Express x4 slot, two
64-bit 133 MHz PCI-X slots and two 64-bit 100 MHz PCI slots (one functions as
a ZCR slot). The SC823 chassis accommodates up to seven low profile add-on
cards.

1-3
Chapter 1: Introduction
Graphics Controller
The PDSM4+/PDSME+ features an integrated video controller based on the ES1000
graphics chip. The ES1000 was designed specifically for servers, featuring low
power consumption, high reliability and superior longevity.
Onboard Controllers/Ports
The PDSM4+/PDSME+ includes one floppy drive controller and one onboard
ATA100 IDE channel. Backpanel I/O ports include one COM port, two USB ports,
PS/2 mouse and keyboard ports, a video (monitor) port and dual Gigabit Ethernet
LAN ports. The PDSM4 also includes an external SCSI port.
Other Features
Other onboard features are included to promote system health. These include
various voltage monitors, a CPU temperature sensor, fan speed sensors, a chas-
sis intrusion header, auto-switching voltage regulators, chassis and CPU overheat
sensors, virus protection and BIOS rescue.

SUPERSERVER 5025M-4/5024M-i Manual
1-4
Figure 1-1. Intel E7230 Chipset:
System Block Diagram
Note: This is a general block diagram. Please see Chapter 5 for details.
E7230
ES1000
LGA775_PROCESSOR
ICH-7R
USB
PORT_0~7
FWH
LPC I/O
MS.
KB.
FDD. SER.1
SER.2
PRN.
PRI_IDE
VRM 10.1
ADDR CTRL CTRL
ADDR DATADATA
UDMA/100
LPC
PCI_32_BUS
DDR2_667/533
VRM V10.1
DMI
ATI
DIMM_CHA
S-ATA/300
4 x SATA
CK410 CLK
MCH
DIMM_CHB
PORTS
PCIE_x8
2XGb_LAN
1_PCIE_x1
PCIE_x1
W83627EHF
FSB: 1066/800/533MHz
LPCUSB 2.0/1.1
PCIE_x4
PXH
2x PCIX_100
PCI-X BUS
SCSI-7901
PCI-X BUS
PCI-X BUS
2x PCIX 133
SUPER SLOT
IPMI I/F
PCI 32 BUS
1_PCIE_x4
(MUKILTEO)

1-5
Chapter 1: Introduction
1-3 Server Chassis Features
The following is a general outline of the main features of the SC823S-550LP/
SC823i-550LP chassis.
System Power
When configured as the 5025M-4+/5025M-i+, the SC823S-550LP/SC823i-550LP
chassis includes a single 550W power supply.
SCSI Subsystem (5025M-4+ only)
The SCSI subsystem supports six 80-pin SCA Ultra320 SCSI hard drives. (Any
standard 1" drives are supported. SCA = Single Connection Attachment.) The SCSI
drives are connected to an SCA backplane that provides power, bus termination
and configuration settings. The SCSI drives are also hot-swap units.
Control Panel
The SC823S-550LP/SC823i-550LP control panel provides important system moni-
toring and control information. LEDs indicate power on, network activity, hard disk
drive activity and system overheat conditions. Also present are a main power button
and a system reset button.
I/O Backplane
The backplane of the SC823S-550LP/SC823i-550LP supports the use of up to
seven low-profile expansion cards and provides one COM port, one VGA port, two
USB ports, PS/2 mouse and keyboard ports and two Gb Ethernet (LAN) ports.
Cooling System
The SC823S-550LP/SC823i-550LP chassis' revolutionary cooling design that in-
cludes four 8-cm system cooling fans. The fans plug into chassis fan connectors
that are located behind the drive bays. A "Fan Speed Control Mode" setting in
BIOS allows the user to set the chassis fan speed [recommended setting is "4-
pin (Server)]". If any fan fails and the ambient air temperature inside the chassis
becomes too high, an overheat LED and alarm will be activated. The system also
includes an air shroud to maximize airflow efficiency.

SUPERSERVER 5025M-4/5024M-i Manual
1-6
1-4 Contacting Supermicro
Headquarters
Address: SuperMicro Computer, Inc.
980 Rock Ave.
San Jose, CA 95131 U.S.A.
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
Web Site: www.supermicro.com
Europe
Address: SuperMicro Computer B.V.
Het Sterrenbeeld 28, 5215 ML
's-Hertogenbosch, The Netherlands
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
[email protected] (Customer Support)
Asia-Pacific
Address: SuperMicro, Taiwan
4F, No. 232-1, Liancheng Rd.
Chung-Ho 235, Taipei County
Taiwan, R.O.C.
Tel: [phone]
Fax: [phone]
Web Site: www.supermicro.com.tw
Technical Support:
Email: [email protected]
Tel: [phone], ext.132 or 139

Chapter 2: Server Installation
2-1
Chapter 2
Server Installation
2-1 Overview
This chapter provides a quick setup checklist to get your SuperServer 5025M-
4+/5025M-i+ up and running. Following these steps in the order given should
enable you to have the system operational within a minimum amount of time. This
quick setup assumes that your SuperServer 5025M-4+/5025M-i+ system has come
to you with the processors and memory preinstalled. If your system is not already
fully integrated with a motherboard, processors, system memory etc., please turn
to the chapter or section noted in each step for details on installing specific com-
ponents.
2-2 Unpacking the System
You should inspect the box the SuperServer 5025M-4+/5025M-i+ was shipped in
and note if it was damaged in any way. If the server itself shows damage you
should file a damage claim with the carrier who delivered it.
Decide on a suitable location for the rack unit that will hold the SuperServer 5025M-
4+/5025M-i+. It should be situated in a clean, dust-free area that is well ventilated.
Avoid areas where heat, electrical noise and electromagnetic fields are generated.
You will also need it placed near a grounded power outlet. Read the Rack and
Server Precautions in the next section.
2-3 Preparing for Setup
The box the SuperServer 5025M-4+/5025M-i+ was shipped in should include two
sets of rail assemblies, two rail mounting brackets and the mounting screws you
will need to install the system into the rack. Follow the steps in the order given to
complete the installation process in a minimum amount of time. Please read this
section in its entirety before you begin the installation procedure outlined in the
sections that follow.

2-2
SUPERSERVER 5025M-4+/5025M-i+ Manual
Choosing a Setup Location
- Leave enough clearance in front of the rack to enable you to open the front door
completely (~25 inches).
- Leave approximately 30 inches of clearance in the back of the rack to allow for
sufficient airflow and ease in servicing.
- This product is for installation only in a Restricted Access Location (dedicated
equipment rooms, service closets and the like).
Rack Precautions
- Ensure that the leveling jacks on the bottom of the rack are fully extended to the
floor with the full weight of the rack resting on them.
- In single rack installation, stabilizers should be attached to the rack.
- In multiple rack installations, the racks should be coupled together.
- Always make sure the rack is stable before extending a component from the
rack.
- You should extend only one component at a time - extending two or more simul-
taneously may cause the rack to become unstable.
Server Precautions
- Review the electrical and general safety precautions in Chapter 4.
- Determine the placement of each component in the rack before you install the
rails.
- Install the heaviest server components on the bottom of the rack first, and then
work up.
- Use a regulating uninterruptible power supply (UPS) to protect the server from
power surges, voltage spikes and to keep your system operating in case of a power
failure.
-Allow the hot plug SCSI drives and power supply units to cool before touching
them.
- Always keep the rack's front door and all panels and components on the servers
closed when not servicing to maintain proper cooling.
!!
Warnings and Precautions!

Chapter 2: Server Installation
2-3
Rack Mounting Considerations
Ambient Operating Temperature
If installed in a closed or multi-unit rack assembly, the ambient operating
temperature of the rack environment may be greater than the ambient temperature
of the room. Therefore, consideration should be given to installing the equipment
in an environment compatible with the manufacturer’s maximum rated ambient
temperature (Tmra).
Reduced Airflow
Equipment should be mounted into a rack so that the amount of airflow required for
safe operation is not compromised.
Mechanical Loading
Equipment should be mounted into a rack so that a hazardous condition does not
arise due to uneven mechanical loading.
Circuit Overloading
Consideration should be given to the connection of the equipment to the power
supply circuitry and the effect that any possible overloading of circuits might have
on overcurrent protection and power supply wiring. Appropriate consideration of
equipment nameplate ratings should be used when addressing this concern.
Reliable Ground
A reliable ground must be maintained at all times. To ensure this, the rack itself
should be grounded. Particular attention should be given to power supply connec-
tions other than the direct connections to the branch circuit (i.e. the use of power
strips, etc.).

2-4
SUPERSERVER 5025M-4+/5025M-i+ Manual
2-4 Installing the System into a Rack
This section provides information on installing the SuperServer 5025M-4+/5025M-i+
into a rack unit. If the 5025M-4+/5025M-i+ has already been mounted into a rack,
you can skip ahead to Sections 2-5 and 2-6. There are a variety of rack units on
the market, which may mean the assembly procedure will differ slightly. The fol-
lowing is a guideline for installing the 5025M-4+/5025M-i+ into a rack with the rack
rails provided. You should also refer to the installation instructions that came with
the rack unit you are using.
Identifying the Sections of the Rack Rails
You should have received two rack rail assemblies with the SuperServer 5025M-
4+/5025M-i+. Each of these assemblies consist of three sections: an inner fixed
chassis rail that secures to the 5025M-4+/5025M-i+ (A) and an outer fixed rack rail
that secures directly to the rack itself (B). A sliding rail guide sandwiched between
the two should remain attached to the fixed rack rail. (See Figure 2-1.) The A and
B rails must be detached from each other to install.
To remove the fixed chassis rail (A), pull it out as far as possible - you should hear
a "click" sound as a locking tab emerges from inside the rail assembly and locks
the inner rail. Then depress the locking tab to pull the inner rail completely out.
Do this for both the left and right side rack rail assemblies.
Figure 2-1. Identifying the Sections of the Rack Rails
A
B