Supero FatTwin F628R3-FC0 User manual

®
SUPER
USER'S MANUAL
Revision 1.0
FatTwin
F628R3-FC0

The information in this User’s Manual has been carefully reviewed and is believed to be accurate.
The vendor assumes no responsibility for any inaccuracies that may be contained in this document,
makes no commitment to update or to keep current the information in this manual, or to notify any
person or organization of the updates. Please Note: For the most up-to-date version of this
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Super Micro Computer, Inc. ("Supermicro") reserves the right to make changes to the product
described in this manual at any time and without notice. This product, including software and
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license. Any use or reproduction of this product is not allowed, except as expressly permitted by
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claims will not exceed the price paid for the hardware product.
FCC Statement: This equipment has been tested and found to comply with the limits for a Class
A digital device pursuant to Part 15 of the FCC Rules. These limits are designed to provide
reasonable protection against harmful interference when the equipment is operated in a commercial
environment. This equipment generates, uses, and can radiate radio frequency energy and, if not
installed and used in accordance with the manufacturer’s instruction manual, may cause harmful
interference with radio communications. Operation of this equipment in a residential area is likely
to cause harmful interference, in which case you will be required to correct the interference at your
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California Best Management Practices Regulations for Perchlorate Materials: This Perchlorate
warning applies only to products containing CR (Manganese Dioxide) Lithium coin cells. “Perchlorate
Material-special handling may apply. See www.dtsc.ca.gov/hazardouswaste/perchlorate”
WARNING: Handling of lead solder materials used in this
product may expose you to lead, a chemical known to
the State of California to cause birth defects and other
reproductive harm.
Revision 1.0a
Release Date: October 17, 2014
Unless you request and receive written permission from Super Micro Computer, Inc., you may not
copy any part of this document.
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Copyright © 2014 by Super Micro Computer, Inc.
All rights reserved.
Printed in the United States of America

iii
Preface
Preface
About This Manual
This manual is written for professional system integrators and PC technicians. It
provides information for the installation and use of the FatTwin™ F628R3-FC0
server. Installation and maintainance should be performed by experienced
technicians only.
The FatTwin F628R3-FC0 is a high-end server based on the F424AF-R1K28BP
4U rackmount chassis and a dual processor X10DRFF-C serverboard. All models
have four serverboard nodes each with one IPMI LAN port and four (4) hot-swap
3.5" SAS or SATA Hard Disk Drives (HDD) each per node. The server has SAS3
instead of SATA drives while the has SATA drives.
Manual Organization
Chapter 1: Introduction
The first chapter provides a checklist of the main components included with the
server system and describes the main features of the X10DRFF-C serverboards
and the F424AF-R1K28BP chassis.
Chapter 2: Server Installation
This chapter describes the steps necessary to install the FatTwin F628R3-FC0 into
a rack and check out the server configuration prior to powering up the system. If
your server was ordered without processor and memory components, this chapter
will refer you to the appropriate sections of the manual for their installation.
Chapter 3: System Interface
Refer here for details on the system interface, which includes the functions and
information provided by the control panel on the chassis as well as other LEDs
located throughout the system.
Chapter 4: System Safety
You should thoroughly familiarize yourself with this chapter for a general overview
of safety precautions that should be followed when installing and servicing the
FatTwin F628R3-FC0.
Chapter 5: Advanced Serverboard Setup
Chapter 5 provides detailed information on the X10DRFF-C serverboards,
including the locations and functions of connections, headers and jumpers. Refer
to this chapter when adding or removing processors or main memory and when
reconfiguring the serverboard.

FatTwin F628R3-FC0 USER'S MANUAL
iv
Chapter 6: Advanced Chassis Setup
Refer to Chapter 6 for detailed information on the F424AF-R1K28BP server chassis.
You should follow the procedures given in this chapter when installing, removing or
reconfiguring SATA or peripheral drives and when replacing system power supply
units and cooling fans.
Chapter 7: BIOS
The BIOS chapter includes an introduction to BIOS and provides detailed information
on running the CMOS Setup Utility.
Appendix A: BIOS Error Beep Codes
Appendix B: System Specifications

v
FatTwin F628R3-FC0 USER'S MANUAL
Notes

vi
Table of Contents
Chapter 1 Introduction
1-1 Overview ......................................................................................................... 1-1
1-2 Serverboard Features..................................................................................... 1-2
Processors ...................................................................................................... 1-2
Memory ........................................................................................................... 1-2
SAS.................................................................................................................1-2
PCI Expansion Slots....................................................................................... 1-2
Onboard Controllers/Ports ..............................................................................1-3
Graphics Controller......................................................................................... 1-3
Aspeed AST2400 BMC Controller .................................................................1-3
Other Features Supported by the Aspeed BMC Controller ......................1-4
Super I/O.........................................................................................................1-4
1-3 Server Chassis Features ................................................................................1-5
System Power.................................................................................................1-5
SAS/SATA Subsystem.....................................................................................1-5
I/O Ports..........................................................................................................1-5
Cooling System...............................................................................................1-5
Air Shrouds ..................................................................................................... 1-5
Mounting Rails ................................................................................................1-6
1-4 Advanced Power Management.......................................................................1-6
Intel® Intelligent Power Node Manager (NM)................................................. 1-6
Manageability Engine (ME)............................................................................. 1-6
1-5 Contacting Supermicro....................................................................................1-8
1-6 FatTwin: System Notes................................................................................... 1-9
Nodes..............................................................................................................1-9
System Power.................................................................................................1-9
SAS/SATA Backplane/Drives ..........................................................................1-9
Chapter 2 Server Installation
2-1 Overview ......................................................................................................... 2-1
2-2 Unpacking the System.................................................................................... 2-1
2-3 Preparing for Setup......................................................................................... 2-1
2-4 Warnings and Precautions.............................................................................. 2-2
Choosing a Setup Location............................................................................. 2-2
Rack Precautions............................................................................................2-2
Server Precautions.......................................................................................... 2-2
Rack Mounting Considerations....................................................................... 2-3
FatTwin F628R3-FC0 USER'S MANUAL

vii
Ambient Operating Temperature................................................................2-3
Reduced Airflow .........................................................................................2-3
Mechanical Loading ...................................................................................2-3
Circuit Overloading..................................................................................... 2-3
Reliable Ground .........................................................................................2-4
2-5 Rack Mounting Instructions............................................................................. 2-4
Identifying the Sections of the Rack Rails......................................................2-4
Adjusting the Rails.......................................................................................... 2-4
Locking Tabs................................................................................................... 2-5
Installing the Rails on a Rack......................................................................... 2-6
Chassis Installation......................................................................................... 2-7
2-6 Checking the Serverboard Setup.................................................................... 2-8
2-7 Checking the Drive Bay Setup........................................................................ 2-9
Chapter 3 System Interface
3-1 Overview ......................................................................................................... 3-1
3-3 F424AF Front I/O Control Panel.....................................................................3-2
3-4 Drive Carrier LEDs.......................................................................................... 3-3
Chapter 4 Standardized Warning Statements for AC Systems
4-1 About Standardized Warning Statements.......................................................4-1
Warning Definition........................................................................................... 4-1
Installation Instructions.................................................................................... 4-4
Circuit Breaker ................................................................................................4-5
Power Disconnection Warning........................................................................4-6
Equipment Installation..................................................................................... 4-8
Restricted Area................................................................................................ 4-9
Battery Handling............................................................................................ 4-10
Redundant Power Supplies .......................................................................... 4-12
Backplane Voltage ........................................................................................ 4-13
Comply with Local and National Electrical Codes........................................4-14
Product Disposal...........................................................................................4-15
Hot Swap Fan Warning.................................................................................4-16
Power Cable and AC Adapter ......................................................................4-18
Chapter 5 Advanced Serverboard Setup
5-1 Handling the Serverboard............................................................................... 5-1
Precautions ..................................................................................................... 5-1
Unpacking ....................................................................................................... 5-1
5-2 Connecting Cables.......................................................................................... 5-2
Connecting Data Cables................................................................................. 5-2
Table of Contents

viii
5-3 I/O Ports.......................................................................................................... 5-2
5-4 Processor and Heatsink Installation................................................................5-3
Installing the LGA2011 Processor .................................................................5-3
Installing a Passive CPU Heatsink .................................................................5-7
Removing the Passive Heatsink..................................................................... 5-8
5-5 Installing Memory............................................................................................ 5-9
Installing & Removing DIMMs......................................................................... 5-9
Removing Memory Modules ...........................................................................5-9
Memory Support for the X10DRFF-C Serverboard ................................. 5-10
5-7 Serverboard Details ......................................................................................5-12
5-8 Connector Definitions.................................................................................... 5-15
5-9 Jumper Settings............................................................................................ 5-19
Explanation of Jumpers ................................................................................ 5-19
5-10 Onboard Indicators........................................................................................ 5-21
5-11 SAS/Serial ATA/PCI-E Connections.............................................................. 5-23
5-11 Installing Drivers............................................................................................ 5-24
SuperDoctor 5............................................................................................... 5-25
5-12 Serverboard Battery...................................................................................... 5-27
Chapter 6 Advanced Chassis Setup
6-1 Static-Sensitive Devices..................................................................................6-1
Precautions ..................................................................................................... 6-1
Unpacking ....................................................................................................... 6-1
6-2 Control Panel ..................................................................................................6-2
6-3 Removing the Power Cord.............................................................................. 6-3
6-4 Installing and Removing Hard Drives .............................................................6-4
Removing Hard Drives from the Front of the Node........................................ 6-5
Installing Hard Drives into the Drive Carriers.................................................6-6
6-5 Node Configurations .......................................................................................6-8
6-6 Removing the Node Cover..............................................................................6-9
6-7 Removing and Installing the Backplane........................................................ 6-10
Removing the Backplane.............................................................................. 6-10
Installing the Backplane.................................................................................6-11
6-8 Installing the Motherboard ...........................................................................6-12
Compatible Motherboards............................................................................. 6-12
Permanent and Optional Standoffs............................................................... 6-12
6-9 Installing Front and Rear Expansion Cards..................................................6-14
PCIE Slot Setup............................................................................................ 6-14
Assembling the PCIE Slot Bracket Assembly.......................................... 6-15
FatTwin F628R3-FC0 USER'S MANUAL

6-10 Checking the Airflow .....................................................................................6-17
Installation Complete..................................................................................... 6-17
6-11 Replacing System Fans................................................................................ 6-18
6-12 Replacing the Power Supply......................................................................... 6-19
Power Supply Replacement.......................................................................... 6-19
Chapter 7 BIOS
7-1 Introduction...................................................................................................... 7-1
Starting BIOS Setup Utility..............................................................................7-1
How To Change the Configuration Data......................................................... 7-1
Starting the Setup Utility................................................................................. 7-2
7-2 Main Setup...................................................................................................... 7-2
7-3 Advanced Setup Configurations......................................................................7-4
7-4 Event Logs.................................................................................................... 7-33
7-5 IPMI............................................................................................................... 7-35
7-6 Security Settings........................................................................................... 7-37
7-7 Boot Settings................................................................................................. 7-38
7-8 Save & Exit ................................................................................................... 7-40
Appendix A BIOS Error Beep Codes
Appendix B System Specifications
ix
Table of Contents

x
Notes
FatTwin F628R3-FC0 USER'S MANUAL

Chapter 1
Introduction
1-1 Overview
The FatTwin F628R3-FC0 is a high-end server comprised of two main subsystems:
the F424AF-R1K28BP 4U server chassis and the X10DRFF-C dual processor
serverboard in four hot-swap nodes. Please refer to our web site for information
on operating systems that have been certified for use with the system (www.
supermicro.com).
In addition to the serverboard and chassis, various hardware components have
been included with the FatTwin F628R3-FC0 server, as listed below:
• Eight (8) 2U passive CPU heat sinks for CPU (SNK-P0048P)
• Four (4) 4-pin 15-cm PDB-to-MB HF power cables (CBL-0486L)
• SAS/SATA Backplane
Four (4) backplanes for sixteen (16) 3.5" HDD (BPN-SAS3-F424-A4)
Four (4) 15-cm 18AWG 2x2 to 2x2 power cables (CBL-0486L)
Four (4) 25-cm 30AWG internal mini-SAS HD to mini-SAS HD cables
(CBL-SAST-0550)
• Four (4) Riser cards (RSC-R1UFF-E16R-O-P)
• One (1) F418/F424 Rail set (MCP-290-41803-0N)
Note: For your system to work properly, please follow the links below to download
all necessary drivers/utilities and the user’s manual for your server.
• Supermicro product manuals: http://www.supermicro.com/support/manuals/
• Product drivers and utilities: ftp://ftp.supermicro.com
• Product safety information:
http://super-dev/about/policies/safety_information.cfm
• If you have any questions, please contact our support team at:
[e-mail]
Chapter 1: Introduction
1-1

1-2
FatTwin F628R3-FC0 USER'S MANUAL
1-2 Serverboard Features
At the heart of the FatTwin F628R3-FC0 lies the X10DRFF-C, a dual processor
serverboard based on the Intel® PCH C612 chipset and designed to provide
maximum performance. Four of these serverboards can be mounted in the
F424AF-R1K28BP chassis.
The sections below cover the main features of the X10DRFF-C serverboard (see
Figure 1-1 for a block diagram of the chipset).
Processors
The X10DRFF-C supports single or dual Intel® Xeon® E5-2600v3 series processors
(Socket R3 LGA 2011). Each processor supports four full-width Intel QuickPath
Interconnect (QPI) links, with support of up to 38.4 GT/s per QPI link and with
Data Transfer Rate of up to 9.6 GT/s per direction. Please refer to the serverboard
description pages on our web site for a complete listing of supported processors
(www.supermicro.com).
Memory
Each X10DRFF serverboard node has eight (8) DIMM slots supporting up to 512 GB
LRDIMM registered ECC or 256 GB of DDR4-2133/1866/1600 MHz speed RDIMM
SDRAM in up to 1 GB, 2 GB, 4 GB, 8 GB, 16 GB, 32 GB or 64 GB (LRDIMM only)
size at 1.20Vs voltages. See Chapter 5 for details.
Note: For the latest CPU/memory updates, please refer to our website at
http://www.supermicro.com/products/serverboard.
SAS
An LSI®SAS3008 SAS3 controller is integrated into X10DRFF-C serverboard of
the F628R3-FC0 server to provide eight (8) SAS connections. The SAS drives are
hot-swappable units and support RAID 0, 1 and 10.
PCI Expansion Slots
The FatTwin F628R3-FC0 has for each node 1x PCI-E 3.0 x16 low-profile slot
available for use with a riser card.

1-3
Chapter 1: Introduction
Onboard Controllers/Ports
One Fast UART 16550 serial port, one 9-pin RS-232 port are located on the
serverboard. The front I/O ports include a VGA (monitor) port, two USB 3.0 ports,
an IPMI dedicated LAN port and two Gigabit Ethernet ports.
Note: For IPMI Configuration Instructions, please refer to the Embedded IPMI
Configuration User's Guide available @ http://www.supermicro.com/support/
manuals/.
Graphics Controller
The X10DRFF-C features an integrated Aspeed AST2400 BMC Controller.
Aspeed AST2400 BMC Controller
Note: The term "IPMI controller" and the term "BMC controller" can be used
interchangeably in this section.
TheAspeedAST2400 BMC Controller, a Baseboard Management Controller (BMC),
supports 2D/VGA-compatible Graphic Cores with PCI interface, creating multi-media
virtualization via Keyboard/Video/Mouse Redirection (KVMR).TheAspeedAST2400
BMC Controller is ideal for remote system management.
The Aspeed AST2400 BMC Controller interfaces with the host system via PCI
connections to communicate with the graphics cores. It supports USB 2.0 and 1.1
for remote keyboard/mouse/virtual media emulation. It also provides LPC interface
support to control Super IO functions. The Aspeed AST2400 BMC Controller is
connected to the network via an external Ethernet PHY module or shared NCSI
connections.
TheAspeed AST2400 BMC Controller communicates with onboard components via
six SMBus interfaces, PECI (Platform Environment Control Interface) buses, and
General Purpose I/O ports.

1-4
FatTwin F628R3-FC0 USER'S MANUAL
Other Features Supported by the Aspeed BMC Controller
The WPCM450R supports the following features:
• IPMI 2.0
• Serial over LAN
• KVM over LAN
• LAN Alerting-SNMP Trap
• Event Log
• X-Bus parallel interface for I/O expansion
• Multiple ADC inputs, Analog and Digital Video outputs
• SPI Flash Host BIOS and firmware bootstrap program supported
• Reduced Media Independent Interface (RMII)
• OS (Operating System) Independency
• Provides remote Hardware Health Monitoring via IPMI. Key features
• Provides Network Management Security via remote access/console redirection.
• Supports the following Management tools: IPMIView, CLI (Command Line
Interface)
• RMCP+ protocol supported
Note: For more information on IPMI configuration, please refer to the IPMI User's
Guide posted on our website at http://www.supermicro.com/support/manuals/.
Super I/O
The X10DRFF-C motherboard supports one serial communication connection. COM
Port 1 can be used for input/output. The UART provide legacy speed with baud rate
of up to 115.2 Kbps as well as an advanced speed with baud rates of 250 K, 500
K, or 1 Mb/s, which support higher speed modems.
The Super I/O provides functions that comply with ACPI (Advanced Configuration
and Power Interface), which includes support of legacy and ACPI power
management through an SMI or SCI function pin. It also features auto power
management to reduce power consumption.

1-5
Chapter 1: Introduction
1-3 Server Chassis Features
The following is a general outline of the main features of the F424AF server chassis.
System Power
The F424AF chassis model includes four high-efficiency 95%+ Platinum certified
redundant 1280 Watt power supplies. In the unlikely event your power supply fails,
replacement is simple and can be accomplished without tools.
SAS/SATA Subsystem
The F424AF supports up to four (4) hot-swap 3.5" SAS/SATA drives in trays for
each node for a total of sixteen (16) drives. These drives are hot-swappable units
and are connected to two backplanes (that provides power and control).
Note: The operating system you use must have RAID support to enable the
hot-swap capability of the drives. For more information, visit our Web site at:
http://www.supermicro.com.
I/O Ports
The F424AF is an proprietary form factor chassis designed to be used in a 4U
rackmount configuration. The F424AF chassis provides one low-profile add-on
card slots, a VGA port, two USB 3.0 ports, one IPMI Ethernet port and two gigabit
Ethernet ports per node.
Cooling System
The F424AF chassis accepts eight (8) 8-cm system fans powered from either the
backpane or the serverboards. When one of the motherboard nodes is removed,
another motherboard will continue to operate the fans.
Air Shrouds
The F424AF chassis requires mylar air shrouds for each node to direct the airflow
where cooling is needed. The air shroud will differ for different motherboards. If using
a motherboard which is not the default in the chassis, refer to the optional parts in
the Appendix of this manual, or the Supermicro Web site at www.supermicro.com
to puchase the proper air shroud.

1-6
FatTwin F628R3-FC0 USER'S MANUAL
Mounting Rails
The F424AF includes a set of rails, and can be placed in a rack for secure storage
and use. To setup your rack, follow the step-by-step instructions included in this
manual.
1-4 Advanced Power Management
Intel® Intelligent Power Node Manager (NM)
The Intel® Intelligent Power Node Manager (IPNM) provides your system with
real-time thermal control and power management for maximum energy efficiency.
Although IPNM Specification Version 1.5 is supported by the BMC (Baseboard
Management Controller), your system must also have IPNM-compatible
Manageability Engine (ME) firmware installed to use this feature.
Manageability Engine (ME)
The Manageability Engine, which is an ARC controller embedded in the IOH (I/O
Hub), provides Server Platform Services (SPS) to your system. The services
provided by SPS are different from those proveded by the ME on client platforms.

1-7
Chapter 1: Introduction
Figure 1-1. Intel PCH C612 Chipset:
System Block Diagram
Note: This is a general block diagram and may not exactly repre-
sent the features on your motherboard. See the previous pages for
the actual specifications of your motherboard. This block diagram is
intended for your reference only.
LPC
JPCIE1
PCIE 3.0 x16
DDR DIMM
B1
DDR DIMM
A1
QPI
DMI
USB
PROCESSOR 1
QPI1
QPI0
PROCESSOR 2
QPI0
QPI1
PCI-E x1
U1
C612
PCH
DMI
PE2
SATA
GEN 3
LAN
i210
LAN
PCIE 2.0 x1
PCIE 2.0 x1
USB LAN1 LAN2
LAN
SAS3008
PWR
BTN
I-SATA3.0#0
PE3
PCIE 3.0 x8
REAR
Vertical
USB CONN
2
0
USB 3.0
1
FRONT I/O
PE2
DDR DIMM
C
D
C1
DDR DIMM
G
DDR DIMM DDR DIMM
H
G1
Socket 00 Socket 01
A
B
CPU0 U2
CPU1
E
F1
DDR DIMM
DDR DIMM
E1
JPCIE2
PCIE 3.0 x16
i210
F
COM1
DDR 3
BMC
AST2400
PHY
RTL8211E
VGA CONN
IPMI LAN
SPI
FLASH
MINI-SAS
HD
H1
D1
MINI-SAS
HD
IPMI
I-SATA3.0#1 I-SATA3.0#2
I-SATA3.0#3
I-SATA3.0#4 I-SATA3.0#5
S-SATA3.0#0 S-SATA3.0#1
S-SATA3.0#2
S-SATA3.0#3

1-8
FatTwin F628R3-FC0 USER'S MANUAL
1-5 Contacting Supermicro
Headquarters
Address: Super Micro Computer, Inc.
980 Rock Ave.
San Jose, CA 95131 U.S.A.
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
Website: www.supermicro.com
Europe
Address: Super Micro Computer B.V.
Het Sterrenbeeld 28, 5215 ML
's-Hertogenbosch, The Netherlands
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
[email protected] (Customer Support)
Website: www.supermicro.nl
Asia-Pacific
Address: Super Micro Computer, Inc.
3F, No. 150, Jian 1st Rd.
Zhonghe Dist., New Taipei City 235
Taiwan (R.O.C)
Tel: [phone]
Fax: [phone]
Email: [email protected]
Website: www.supermicro.com.tw

1-9
Chapter 1: Introduction
1-6 FatTwin: System Notes
As a FatTwin configuration, the FatTwin F628R3-FC0 is a unique server system.
With four system boards incorporated into a single chassis acting as four separate
nodes, there are several points you should keep in mind.
Nodes
Each of the four serverboards act as a separate node in the system.As independant
nodes, each may be powered off and on without affecting the others. In addition,
each node is a hot-swappable unit that may be removed from the rear of the chassis.
The nodes are connected to the server backplane by means of an adapter card.
Note:Aguide pin is located between the upper and lower nodes on the inner chassis
wall. This guide pin also acts as a “stop” when a node is fully installed. If too much
force is used when inserting a node this pin may break off. Take care to slowly slide
a node in until you hear the “click” of the locking tab seating itself.
System Power
Four 1280 Watt power supplies are used to provide the power for all serverboards.
Each serverboard however, can be shut down independently of the other with the
power button on its own control panel.
SAS/SATA Backplane/Drives
As a system, the FatTwin F628R3-FC0 supports the use of sixteen (16) SAS/SATA
drives. Each of the four backplanes in the system logically connects a set of four (4)
hot-swap front mounted SAS/SATA drives to each node's backplane/serverboard.
Consequently, RAID setup is limited to a four-drive scheme (RAID cannot be spread
across all drives). See Chapter 6 for the logical hard drive and node configuration.

1-10
FatTwin F628R3-FC0 USER'S MANUAL
Notes