Fujitsu PRIMERGY CX400 S1 User manual

Upgrade and Maintenance Manual - English
PRIMERGY CX400 S1
Server Enclosure
Upgrade and Maintenance Manual
Edition December 2012

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Copyright © 2012 Fujitsu Technology Solutions GmbH.
All rights reserved.
Delivery subject to availability; right of technical modifications reserved.
All hardware and software names used are trademarks of their respective manufacturers.
– The contents of this manual may be revised without prior notice.
– Fujitsu assumes no liability for damages to third party copyrights or other rights arising from
the use of any information in this manual.
– No part of this manual may be reproduced in any form without the prior written permission
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in the USA and other countries.

CX400 S1 Upgrade and Maintenance Manual
Before reading this manual
For your safety
This manual contains important information for safely and correctly using this
product.
Carefully read the manual before using this product. Pay particular attention to
the accompanying manual "Safety Notes and Regulations" and ensure these
safety notes are understood before using the product. Keep this manual and the
manual "Safety Notes and Regulations" in a safe place for easy reference while
using this product.
Radio interference
This product is a "Class A" ITE (Information Technology Equipment). In a
domestic environment this product may cause radio interference, in which case
the user may be required to take appropriate measures. VCCI-A
Aluminum electrolytic capacitors
The aluminum electrolytic capacitors used in the product's printed circuit board
assemblies and in the mouse and keyboard are limited-life components. Use of
these components beyond their operating life may result in electrolyte leakage
or depletion, potentially causing emission of foul odor or smoke.
As a guideline, in a normal office environment (25°C) operating life is not
expected to be reached within the maintenance support period (5 years).
However, operating life may be reached more quickly if, for example, the
product is used in a hot environment. The customer shall bear the cost of
replacing replaceable components which have exceeded their operating life.
Note that these are only guidelines, and do not constitute a guarantee of
trouble-free operation during the maintenance support period.
High safety use
This product has been designed and manufactured to be used in commercial
and/or industrial areas as a server.
When used as visual display workplace, it must not be placed in the direct field
of view to avoid incommoding reflections (applies only to TX server systems).
The device has not been designed or manufactured for uses which demand an
extremely high level of safety and carry a direct and serious risk of life or body
if such safety cannot be assured.

Upgrade and Maintenance Manual CX400 S1
These uses include control of nuclear reactions in nuclear power plants,
automatic airplane flight control, air traffic control, traffic control in mass
transport systems, medical devices for life support, and missile guidance
control in weapons systems (hereafter, "high safety use"). Customers should
not use this product for high safety use unless measures are in place for
ensuring the level of safety demanded of such use. Please consult the sales
staff of Fujitsu if intending to use this product for high safety use.
Measures against momentary voltage drop
This product may be affected by a momentary voltage drop in the power supply
caused by lightning. To prevent a momentary voltage drop, use of an AC
uninterruptible power supply is recommended.
(This notice follows the guidelines of Voltage Dip Immunity of Personal
Computer issued by JEITA, the Japan Electronics and Information Technology
Industries Association.)
Technology controlled by the Foreign Exchange and Foreign Trade
Control Law of Japan
Documents produced by Fujitsu may contain technology controlled by the
Foreign Exchange and Foreign Trade Control Law of Japan. Documents which
contain such technology should not be exported from Japan or transferred to
non-residents of Japan without first obtaining authorization in accordance with
the above law.
Harmonic Current Standards
This product conforms to harmonic current standard JIS C 61000-3-2.
Only for the Japanese market: About SATA hard disk drives
The SATA version of this server supports hard disk drives with SATA / BC-SATA
storage interfaces. Please note that the usage and operation conditions differ
depending on the type of hard disk drive used.
Please refer to the following internet address for further information on the
usage and operation conditions of each available type of hard disk drive:
http://primeserver.fujitsu.com/primergy/harddisk/

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Content
1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . 15
1.1 Where to find which information? . . . . . . . . . . . . . . . 16
1.2 Notational conventions . . . . . . . . . . . . . . . . . . . . 17
2 Before you start . . . . . . . . . . . . . . . . . . . . . . . . 19
2.1 Classification of procedures . . . . . . . . . . . . . . . . . 21
2.1.1 Customer Replaceable Units (CRU) . . . . . . . . . . . . . . . 21
2.1.2 Field Replaceable Units (FRU) . . . . . . . . . . . . . . . . . 22
2.2 Average task duration . . . . . . . . . . . . . . . . . . . . . 23
2.3 Tools you need at hand . . . . . . . . . . . . . . . . . . . . 24
2.3.1 For the 2.5-inch chassis . . . . . . . . . . . . . . . . . . . . . 24
2.3.2 For the 3.5-inch chassis . . . . . . . . . . . . . . . . . . . . . 26
2.4 Documents you need at hand . . . . . . . . . . . . . . . . . 27
2.4.1 Documents for the server enclosure . . . . . . . . . . . . . . . 28
2.4.2 Documents for the server nodes . . . . . . . . . . . . . . . . . 30
3 Important information . . . . . . . . . . . . . . . . . . . . . 31
3.1 Safety instructions . . . . . . . . . . . . . . . . . . . . . . . 31
3.2 CE conformity . . . . . . . . . . . . . . . . . . . . . . . . . 37
3.3 FCC Class A Compliance Statement . . . . . . . . . . . . . 38
3.4 Environmental protection . . . . . . . . . . . . . . . . . . . 39
4 Basic hardware procedures . . . . . . . . . . . . . . . . . . 41
4.1 Shutting down the server node . . . . . . . . . . . . . . . . 41
4.2 Disconnecting the power cord . . . . . . . . . . . . . . . . 42
4.3 Removing the server enclosure out of the rack . . . . . . . 43
4.3.1 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . . 43
4.3.2 Removing the rear fixing brackets . . . . . . . . . . . . . . . . 44

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4.3.3 Removing the server enclosure out of the rack . . . . . . . . . . 45
4.4 Removing the server node from the server enclosure . . . . 48
4.4.1 Removing the server node CX250 S1 . . . . . . . . . . . . . . 48
4.4.2 Removing the server node CX270 S1 . . . . . . . . . . . . . . 49
4.5 Removing the server node dummy module . . . . . . . . . . 50
4.6 Opening the server enclosure . . . . . . . . . . . . . . . . . 51
4.6.1 2.5-inch chassis . . . . . . . . . . . . . . . . . . . . . . . . . . 51
4.6.1.1 Removing the top cover 1 . . . . . . . . . . . . . . . . . . . 51
4.6.1.2 Removing the top cover 2 . . . . . . . . . . . . . . . . . . . 52
4.6.2 3.5-inch chassis . . . . . . . . . . . . . . . . . . . . . . . . . . 53
4.6.2.1 Removing the top cover . . . . . . . . . . . . . . . . . . . . 53
4.7 Removing the power distribution module . . . . . . . . . . . 54
4.8 Installing the power distribution module . . . . . . . . . . . 57
4.9 Closing the server enclosure . . . . . . . . . . . . . . . . . . 61
4.9.1 2.5-inch chassis . . . . . . . . . . . . . . . . . . . . . . . . . . 61
4.9.1.1 Installing the top cover 2 . . . . . . . . . . . . . . . . . . . 61
4.9.1.2 Installing the top cover 1 . . . . . . . . . . . . . . . . . . . 62
4.9.2 3.5-inch chassis . . . . . . . . . . . . . . . . . . . . . . . . . . 63
4.9.2.1 Installing the top cover . . . . . . . . . . . . . . . . . . . . 63
4.10 Installing the server node dummy module . . . . . . . . . . . 64
4.11 Installing the server node in the server enclosure . . . . . . 65
4.11.1 Basic information . . . . . . . . . . . . . . . . . . . . . . . . . 65
4.11.2 Installing server node CX250 S1 . . . . . . . . . . . . . . . . . 66
4.11.3 Installing server node CX270 S1 . . . . . . . . . . . . . . . . . 66
4.12 Mounting the server enclosure in the rack . . . . . . . . . . 67
4.12.1 Seating the server on the rack rails . . . . . . . . . . . . . . . . 67
4.12.2 Installing the rail kit cage nut . . . . . . . . . . . . . . . . . . . 71
4.13 Connecting the power cord . . . . . . . . . . . . . . . . . . . 73
4.14 Switching on the server node(s) . . . . . . . . . . . . . . . . 75
5 Basic software procedures . . . . . . . . . . . . . . . . . . . 77
5.1 Starting the maintenance task . . . . . . . . . . . . . . . . . 77
5.1.1 Switching on the ID indicator . . . . . . . . . . . . . . . . . . . 77
5.2 Completing the maintenance task . . . . . . . . . . . . . . . 77
5.2.1 Switching off the ID indicator . . . . . . . . . . . . . . . . . . . 77

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5.2.2 Performing a RAID array rebuild . . . . . . . . . . . . . . . . . 78
5.2.3 Using the Chassis ID Prom Tool . . . . . . . . . . . . . . . . . 78
6 Power supply . . . . . . . . . . . . . . . . . . . . . . . . . . 79
6.1 Basic information . . . . . . . . . . . . . . . . . . . . . . . 79
6.1.1 General equipping rules . . . . . . . . . . . . . . . . . . . . . 80
6.2 Installing the power supply module . . . . . . . . . . . . . . 80
6.2.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . . . 81
6.2.2 Removing the dummy cover . . . . . . . . . . . . . . . . . . . 81
6.2.3 Installing the power supply module . . . . . . . . . . . . . . . 82
6.2.4 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . . 83
6.3 Removing the power supply module . . . . . . . . . . . . . 84
6.3.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . . . 84
6.3.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . . 84
6.3.3 Installing the dummy cover . . . . . . . . . . . . . . . . . . . 85
6.4 Replacing the power supply module . . . . . . . . . . . . . 86
6.4.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . . . 86
6.4.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . . 86
6.4.3 Removing the defective power supply module . . . . . . . . . 87
6.4.4 Installing the new power supply module . . . . . . . . . . . . . 87
6.4.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . . 87
6.5 Replacing the power distribution board . . . . . . . . . . . 88
6.5.1 Replacing the defective top PDB . . . . . . . . . . . . . . . . 88
6.5.1.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 88
6.5.1.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . 88
6.5.1.3 Removing the top PDB . . . . . . . . . . . . . . . . . . . . 89
6.5.1.4 Installing the top PDB . . . . . . . . . . . . . . . . . . . . 91
6.5.1.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . 92
6.5.2 Replacing the defective bottom PDB . . . . . . . . . . . . . . 93
6.5.2.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 93
6.5.2.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . 93
6.5.2.3 Removing the bottom PDB . . . . . . . . . . . . . . . . . . 94
6.5.2.4 Installing the bottom PDB . . . . . . . . . . . . . . . . . . 96
6.5.2.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . 98
7 Hard disk drives / solid state drives . . . . . . . . . . . . . . 99
7.1 Basic information . . . . . . . . . . . . . . . . . . . . . . . 100

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7.1.1 General equipping rules . . . . . . . . . . . . . . . . . . . . 100
7.2 2.5-inch hard disk drives / solid state drives . . . . . . . . 101
7.2.1 HDD/SSD install order in the 2.5-inch chassis . . . . . . . . . 101
7.2.1.1 Configuration with standard CPU . . . . . . . . . . . . . . 102
7.2.1.2 Configuration with 135 W (8 core) or 130 W (4 core) CPU support
102
7.2.2 Installing 2.5-inch HDD/SSD modules . . . . . . . . . . . . . 103
7.2.2.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 103
7.2.2.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . 103
7.2.2.3 Removing a 2.5-inch HDD/SSD tray . . . . . . . . . . . . 104
7.2.2.4 Installing a 2.5-inch HDD/SSD module . . . . . . . . . . . 105
7.2.2.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . 105
7.2.3 Removing 2.5-inch HDD/SSD modules . . . . . . . . . . . . . 106
7.2.3.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 106
7.2.3.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . 106
7.2.3.3 Removing a 2.5-inch HDD/SSD module . . . . . . . . . . 107
7.2.3.4 Installing a 2.5-inch HDD/SSD tray . . . . . . . . . . . . . 108
7.2.4 Replacing a 2.5-inch HDD/SSD module . . . . . . . . . . . . 109
7.2.4.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 109
7.2.4.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . 109
7.2.4.3 Removing a 2.5-inch HDD/SSD module . . . . . . . . . . 109
7.2.4.4 Installing a 2.5-inch HDD/SSD module . . . . . . . . . . . 110
7.2.4.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . 110
7.3 3.5-inch hard disk drives . . . . . . . . . . . . . . . . . . . 110
7.3.1 HDD install order in the 3.5-inch chassis . . . . . . . . . . . . 110
7.3.1.1 Configuration with standard CPU . . . . . . . . . . . . . . 111
7.3.2 Installing 3.5-inch HDD modules . . . . . . . . . . . . . . . . 112
7.3.2.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 112
7.3.2.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . 112
7.3.2.3 Removing a 3.5-inch HDD tray . . . . . . . . . . . . . . . 113
7.3.2.4 Installing a 3.5-inch HDD module . . . . . . . . . . . . . . 114
7.3.2.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . 114
7.3.3 Removing 3.5-inch HDD modules . . . . . . . . . . . . . . . 115
7.3.3.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 115
7.3.3.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . 115
7.3.3.3 Removing a 3.5-inch HDD module . . . . . . . . . . . . . 116
7.3.3.4 Installing a 3.5-inch HDD tray . . . . . . . . . . . . . . . . 117
7.3.4 Replacing a 3.5-inch HDD module . . . . . . . . . . . . . . . 118
7.3.4.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 118
7.3.4.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . 118
7.3.4.3 Removing a 3.5-inch HDD module . . . . . . . . . . . . . 119

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7.3.4.4 Installing a 3.5-inch HDD module . . . . . . . . . . . . . . 119
7.3.4.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . 119
7.4 Replacing HDD/SSD SAS/SATA backplanes . . . . . . . . . 120
7.4.1 Replacing the 2.5-inch HDD/SSD SAS/SATA backplane . . . . 120
7.4.1.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 120
7.4.1.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . 120
7.4.1.3 Removing the 2.5-inch HDD SAS/SATA backplane . . . . . 121
7.4.1.4 Installing the 2.5-inch HDD SAS/SATA backplane . . . . . . 123
7.4.1.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . 124
7.4.2 Replacing the 3.5-inch HDD SAS/SATA backplane . . . . . . . 126
7.4.2.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 126
7.4.2.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . 126
7.4.2.3 Removing the 3.5-inch HDD SAS / SATA backplane . . . . 127
7.4.2.4 Installing the 3.5-inch HDD SAS/SATA backplane . . . . . . 129
7.4.2.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . 130
8 System fan . . . . . . . . . . . . . . . . . . . . . . . . . . . 133
8.1 Basic Information . . . . . . . . . . . . . . . . . . . . . . . 134
8.2 Replacing the fan in the fan module . . . . . . . . . . . . . 136
8.2.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . . . 136
8.2.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . . 136
8.2.3 Removing the fan module . . . . . . . . . . . . . . . . . . . . 137
8.2.4 Removing the fan from the fan holder . . . . . . . . . . . . . . 139
8.2.5 Installing fan1 and fan2 . . . . . . . . . . . . . . . . . . . . . 141
8.2.5.1 Installing the fan1 . . . . . . . . . . . . . . . . . . . . . . 142
8.2.5.2 Installing the fan2 . . . . . . . . . . . . . . . . . . . . . . 143
8.2.6 Installing fan3 and fan4 . . . . . . . . . . . . . . . . . . . . . 144
8.2.6.1 Installing the fan4 . . . . . . . . . . . . . . . . . . . . . . 145
8.2.6.2 Installing the fan3 . . . . . . . . . . . . . . . . . . . . . . 146
8.2.7 Installing the fan module . . . . . . . . . . . . . . . . . . . . . 147
8.2.8 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . . 150
9 Midplane . . . . . . . . . . . . . . . . . . . . . . . . . . . . 151
9.1 Replacing the midplane . . . . . . . . . . . . . . . . . . . . 152
9.1.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . . . 152
9.1.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . . 152
9.1.3 Removing the midplane . . . . . . . . . . . . . . . . . . . . . 153

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9.1.4 Installing the midplane . . . . . . . . . . . . . . . . . . . . . 155
9.1.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . . 158
10 Linking boards . . . . . . . . . . . . . . . . . . . . . . . . . 159
10.1 Linking boards in 2.5-inch HDD chassis . . . . . . . . . . . 159
10.1.1 Basic Information . . . . . . . . . . . . . . . . . . . . . . . . 159
10.1.2 Replacing the linking board . . . . . . . . . . . . . . . . . . 160
10.1.2.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 161
10.1.2.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . 161
10.1.2.3 Removing the linking board . . . . . . . . . . . . . . . . . 161
10.1.2.4 Installing the linking board . . . . . . . . . . . . . . . . . . 162
10.1.2.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . 164
10.2 Linking boards in 3.5-inch HDD chassis . . . . . . . . . . . 165
10.2.1 Basic information . . . . . . . . . . . . . . . . . . . . . . . . 165
10.2.2 Replacing the linking board . . . . . . . . . . . . . . . . . . . 166
10.2.2.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . 166
10.2.2.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . 166
10.2.2.3 Removing the linking board . . . . . . . . . . . . . . . . . 167
10.2.2.4 Installing the linking board . . . . . . . . . . . . . . . . . . 168
10.2.2.5 Concluding steps . . . . . . . . . . . . . . . . . . . . . . 170
11 Front panel . . . . . . . . . . . . . . . . . . . . . . . . . . 171
11.1 Replacing the front panel board . . . . . . . . . . . . . . . 172
11.1.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . . 172
11.1.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . . 172
11.1.3 Removing the front ear bracket . . . . . . . . . . . . . . . . . 173
11.1.4 Removing the front panel board . . . . . . . . . . . . . . . . 174
11.1.5 Installing the front panel board . . . . . . . . . . . . . . . . . 178
11.1.6 Installing the front ear bracket . . . . . . . . . . . . . . . . . 183
11.1.7 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . . 184
11.2 Replacing the front panel cable . . . . . . . . . . . . . . . 185
11.2.1 Required tools . . . . . . . . . . . . . . . . . . . . . . . . . 185
11.2.2 Preliminary steps . . . . . . . . . . . . . . . . . . . . . . . . 185
11.2.3 Removing the front panel cable . . . . . . . . . . . . . . . . . 187
11.2.4 Installing the front panel cable . . . . . . . . . . . . . . . . . 188
11.2.5 Routing of the front panel cable . . . . . . . . . . . . . . . . . 189
11.2.6 Concluding steps . . . . . . . . . . . . . . . . . . . . . . . . 189