Life technologies Countess Series User manual

5For Research Use Only. Not for use in diagnostic procedures.
QUICK REFERENCE
Limited Product Warranty
Life Technologies Corporation and/or its affiliate(s) warrant their products as set forth in the Life
Technologies’ General Terms and Conditions of Sale found on Life Technologies’ website at
www.lifetechnologies.com/termsandconditions.If you have any questions, please contact Life
Technologies at www.lifetechnologies.com/support.
Disclaimer
LIFE TECHNOLOGIES CORPORATION AND/OR ITS AFFILIATE(S) DISCLAIM ALL WARRANTIES WITH RESPECT TO
THIS DOCUMENT, EXPRESSED OR IMPLIED, INCLUDING BUT NOT LIMITED TO THOSE OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE, OR NON-INFRINGEMENT. TO THE EXTENT ALLOWED BY LAW, IN NO
EVENT SHALL LIFE TECHNOLOGIES AND/OR ITS AFFILIATE(S) BE LIABLE, WHETHER IN CONTRACT, TORT,
WARRANTY, OR UNDER ANY STATUTE OR ON ANY OTHER BASIS FOR SPECIAL, INCIDENTAL, INDIRECT,
PUNITIVE, MULTIPLE OR CONSEQUENTIAL DAMAGES IN CONNECTION WITH OR ARISING FROM THIS
DOCUMENT, INCLUDING BUT NOT LIMITED TO THE USE THEREOF.
Important Licensing Information
This product may be covered by one or more Limited Use Label Licenses. By use of this product, you accept the
terms and conditions of all applicable Limited Use Label Licenses.
All trademarks are the property of Thermo Fisher Scientific and its subsidiaries, unless otherwise specified.
©2014 Thermo Fisher Scientific Inc. All rights reserved.
For support visit lifetechnologies.com/support or email techsupport@lifetech.com
lifetechnologies.com
4 September 2014
Countess®II
Countess®II FL
Automated Cell Counter
Catalog Numbers AMQAX1000, AMQAF1000
Pub. no. MAN0010826
Rev. A.0
Changing EVOS®Light Cubes
Note: For Countess®II FL (AMQAF100) only.
The Countess®II FL Automated Cell Counter can hold up to two EVOS®light cubes. Light
cubes do not come standard with the device and must be purchased separately.
To install a light cube:
1. Turn off the instrument by flipping the power switch to the OFF position and unplug it
from the electrical outlet.
2. Unlatch the back panel of the instrument.
3. Using the tool provided on the inside of the back panel, loosen
the two screws (red arrows) that secure the light cube to the
instrument.
4. Once the light cube is loosened, thread the tool into the center
hole in the cube (white arrow) and gently pull the light cube out of
the instrument.
5. To install a light cube, put the cube into one of the two empty slots.
6. Using the light cube tool, tighten the two screws to securely attach
the cube to the instrument.
7. Place the light cube tool into its slot inside the back panel, and then install the back
panel and secure it in its place.
8. Plug the instrument back into the electric outlet and turn it on by flipping the power
switch to the ON position.

4
Overview
The Countess®II (Cat. no. AMQAX1000) is an automated benchtop cell counter that
performs cell count and viability measurements of trypan blue stained samples that are
loaded into plastic, disposable Countess®Cell Counting Chamber Slides.
The Countess®II FL (Cat. no. AMQAF1000) is a fully automated cell counter that uses EVOS®
light cube technology to analyze fluorescently labeled cells or trypan blue stained samples.
Cells can be counted from either plastic, disposable Countess®Cell Counting Chamber
Slides or from glass Countess®II FL Reusable Chamber Slides.
Note: The Countess®II and Countess®II FL User Guide is provided on the USB flash drive. You
can also download the user guide from the Countess®Automated Cell Counter product page at
www.lifetechnologies.com/countess.
23
USB
port Slide
port
Slide
carrier
7” capacitive
touchscreen
Setup
1. Unpack the Countess®II instrument and place it on a flat, level, dry surface.
2. Ensure that the power switch located onthe back of the instrument is in the OFF
position, and then plug the power cord into the instrument.
3. Plug the power cord into the electrical outlet.
4. Turn on the instrument by flipping the power switch to the ON position.
5. Once the Home page is displayed, the instrument is ready to use.
Note: To get the best performance from the Countess®II and Countess®II FL Automated Cell
Counters, check for software updates at www.lifetechnologies.com/countess.
Basic operation
Note: For detailed information such as advanced operations (i.e., fluorescence counting, setting
light levels, adjusting counting algorithm, etc.), refer to the user guide.
1. Prepare sample by adding 10 µL of your cell suspension to 10 µL of 0.4% trypan blue stain.
2. Load 10 µL of the sample mixture per chamber into the Countess®Cell Counting
Chamber Slide.
3. Insert the slide, sample side first, into the slide port until you hear a soft click.
Note: The Countess®II Automated Cell Counter comes with the holder for disposable plastic
chamber slides pre‑installed. The plastic slides are directly inserted into the slide holder,
which cannot be removed.
4. The instrument automatically illuminates the sample and focuses the cells.
5. To enable the auto focus to function properly, manually focus the cells using the Focus
slider and press Set to set the optimal focus.
Note: The auto focus algorithm is designed to highlight the differences between live and dead
cells. Therefore, the optimal focus level is slightly “under” focus (see examples on page4).
Optimally focused “live” cells have a light colored center, whereas “dead” cells are dark
throughout.
Power
switch
EVOS®
light cubes
Power
input jack
Slide
carrier
Light cube
tool
USB
port
6. Set exposure using the Light source slider, and press Capture. The instrument captures
the image and displays the results (total concentration, percentage and concentration of
live and dead cells).
7. To count the sample in the second chamber, remove and turn around the slide, and
reinsert it sample side first into the instrument.
Changing the slide holder
Note: For Countess®II FL (AMQAF100) only.
1. Grasp both sides of the holder for disposable chamber slides and gently squeeze while
pulling it out of the instrument.
2. Unlatch the back panel of the instrument and remove the holder for reusable glass slides.
3. Place the holder for disposable slides in the back panel for storage and secure the back
panel to the instrument.
4. Place the glass Countess®II FL Reusable Chamber Slide into the holder, sample side
over the hole in the slide holder.
5. Insert the holder with the reusable glass slide into the instrument until you hear a click.
6. To remove, push the slide holder inward to release it, and then pull the holder the
remainder of the way out.
Focus is not optimal Focus is optimal
The back panel of the Countess®II FL Automated Cell Counter allows access to the optional
EVOS®light cubes and provides storage for the light cube tool and the slide carrier. The
back panel is secured to the instrument by two captive ¼-turn fasteners.
The back panel of the Countess®II Automated Cell Counter is fixed to the instrument and
cannot be opened.

4
Overview
The Countess®II (Cat. no. AMQAX1000) is an automated benchtop cell counter that
performs cell count and viability measurements of trypan blue stained samples that are
loaded into plastic, disposable Countess®Cell Counting Chamber Slides.
The Countess®II FL (Cat. no. AMQAF1000) is a fully automated cell counter that uses EVOS®
light cube technology to analyze fluorescently labeled cells or trypan blue stained samples.
Cells can be counted from either plastic, disposable Countess®Cell Counting Chamber
Slides or from glass Countess®II FL Reusable Chamber Slides.
Note: The Countess®II and Countess®II FL User Guide is provided on the USB flash drive. You
can also download the user guide from the Countess®Automated Cell Counter product page at
www.lifetechnologies.com/countess.
23
USB
port Slide
port
Slide
carrier
7” capacitive
touchscreen
Setup
1. Unpack the Countess®II instrument and place it on a flat, level, dry surface.
2. Ensure that the power switch located onthe back of the instrument is in the OFF
position, and then plug the power cord into the instrument.
3. Plug the power cord into the electrical outlet.
4. Turn on the instrument by flipping the power switch to the ON position.
5. Once the Home page is displayed, the instrument is ready to use.
Note: To get the best performance from the Countess®II and Countess®II FL Automated Cell
Counters, check for software updates at www.lifetechnologies.com/countess.
Basic operation
Note: For detailed information such as advanced operations (i.e., fluorescence counting, setting
light levels, adjusting counting algorithm, etc.), refer to the user guide.
1. Prepare sample by adding 10 µL of your cell suspension to 10 µL of 0.4% trypan blue stain.
2. Load 10 µL of the sample mixture per chamber into the Countess®Cell Counting
Chamber Slide.
3. Insert the slide, sample side first, into the slide port until you hear a soft click.
Note: The Countess®II Automated Cell Counter comes with the holder for disposable plastic
chamber slides pre‑installed. The plastic slides are directly inserted into the slide holder,
which cannot be removed.
4. The instrument automatically illuminates the sample and focuses the cells.
5. To enable the auto focus to function properly, manually focus the cells using the Focus
slider and press Set to set the optimal focus.
Note: The auto focus algorithm is designed to highlight the differences between live and dead
cells. Therefore, the optimal focus level is slightly “under” focus (see examples on page4).
Optimally focused “live” cells have a light colored center, whereas “dead” cells are dark
throughout.
Power
switch
EVOS®
light cubes
Power
input jack
Slide
carrier
Light cube
tool
USB
port
6. Set exposure using the Light source slider, and press Capture. The instrument captures
the image and displays the results (total concentration, percentage and concentration of
live and dead cells).
7. To count the sample in the second chamber, remove and turn around the slide, and
reinsert it sample side first into the instrument.
Changing the slide holder
Note: For Countess®II FL (AMQAF100) only.
1. Grasp both sides of the holder for disposable chamber slides and gently squeeze while
pulling it out of the instrument.
2. Unlatch the back panel of the instrument and remove the holder for reusable glass slides.
3. Place the holder for disposable slides in the back panel for storage and secure the back
panel to the instrument.
4. Place the glass Countess®II FL Reusable Chamber Slide into the holder, sample side
over the hole in the slide holder.
5. Insert the holder with the reusable glass slide into the instrument until you hear a click.
6. To remove, push the slide holder inward to release it, and then pull the holder the
remainder of the way out.
Focus is not optimal Focus is optimal
The back panel of the Countess®II FL Automated Cell Counter allows access to the optional
EVOS®light cubes and provides storage for the light cube tool and the slide carrier. The
back panel is secured to the instrument by two captive ¼-turn fasteners.
The back panel of the Countess®II Automated Cell Counter is fixed to the instrument and
cannot be opened.

4
Overview
The Countess®II (Cat. no. AMQAX1000) is an automated benchtop cell counter that
performs cell count and viability measurements of trypan blue stained samples that are
loaded into plastic, disposable Countess®Cell Counting Chamber Slides.
The Countess®II FL (Cat. no. AMQAF1000) is a fully automated cell counter that uses EVOS®
light cube technology to analyze fluorescently labeled cells or trypan blue stained samples.
Cells can be counted from either plastic, disposable Countess®Cell Counting Chamber
Slides or from glass Countess®II FL Reusable Chamber Slides.
Note: The Countess®II and Countess®II FL User Guide is provided on the USB flash drive. You
can also download the user guide from the Countess®Automated Cell Counter product page at
www.lifetechnologies.com/countess.
23
USB
port Slide
port
Slide
carrier
7” capacitive
touchscreen
Setup
1. Unpack the Countess®II instrument and place it on a flat, level, dry surface.
2. Ensure that the power switch located onthe back of the instrument is in the OFF
position, and then plug the power cord into the instrument.
3. Plug the power cord into the electrical outlet.
4. Turn on the instrument by flipping the power switch to the ON position.
5. Once the Home page is displayed, the instrument is ready to use.
Note: To get the best performance from the Countess®II and Countess®II FL Automated Cell
Counters, check for software updates at www.lifetechnologies.com/countess.
Basic operation
Note: For detailed information such as advanced operations (i.e., fluorescence counting, setting
light levels, adjusting counting algorithm, etc.), refer to the user guide.
1. Prepare sample by adding 10 µL of your cell suspension to 10 µL of 0.4% trypan blue stain.
2. Load 10 µL of the sample mixture per chamber into the Countess®Cell Counting
Chamber Slide.
3. Insert the slide, sample side first, into the slide port until you hear a soft click.
Note: The Countess®II Automated Cell Counter comes with the holder for disposable plastic
chamber slides pre‑installed. The plastic slides are directly inserted into the slide holder,
which cannot be removed.
4. The instrument automatically illuminates the sample and focuses the cells.
5. To enable the auto focus to function properly, manually focus the cells using the Focus
slider and press Set to set the optimal focus.
Note: The auto focus algorithm is designed to highlight the differences between live and dead
cells. Therefore, the optimal focus level is slightly “under” focus (see examples on page4).
Optimally focused “live” cells have a light colored center, whereas “dead” cells are dark
throughout.
Power
switch
EVOS®
light cubes
Power
input jack
Slide
carrier
Light cube
tool
USB
port
6. Set exposure using the Light source slider, and press Capture. The instrument captures
the image and displays the results (total concentration, percentage and concentration of
live and dead cells).
7. To count the sample in the second chamber, remove and turn around the slide, and
reinsert it sample side first into the instrument.
Changing the slide holder
Note: For Countess®II FL (AMQAF100) only.
1. Grasp both sides of the holder for disposable chamber slides and gently squeeze while
pulling it out of the instrument.
2. Unlatch the back panel of the instrument and remove the holder for reusable glass slides.
3. Place the holder for disposable slides in the back panel for storage and secure the back
panel to the instrument.
4. Place the glass Countess®II FL Reusable Chamber Slide into the holder, sample side
over the hole in the slide holder.
5. Insert the holder with the reusable glass slide into the instrument until you hear a click.
6. To remove, push the slide holder inward to release it, and then pull the holder the
remainder of the way out.
Focus is not optimal Focus is optimal
The back panel of the Countess®II FL Automated Cell Counter allows access to the optional
EVOS®light cubes and provides storage for the light cube tool and the slide carrier. The
back panel is secured to the instrument by two captive ¼-turn fasteners.
The back panel of the Countess®II Automated Cell Counter is fixed to the instrument and
cannot be opened.

5For Research Use Only. Not for use in diagnostic procedures.
QUICK REFERENCE
Limited Product Warranty
Life Technologies Corporation and/or its affiliate(s) warrant their products as set forth in the Life
Technologies’ General Terms and Conditions of Sale found on Life Technologies’ website at
www.lifetechnologies.com/termsandconditions.If you have any questions, please contact Life
Technologies at www.lifetechnologies.com/support.
Disclaimer
LIFE TECHNOLOGIES CORPORATION AND/OR ITS AFFILIATE(S) DISCLAIM ALL WARRANTIES WITH RESPECT TO
THIS DOCUMENT, EXPRESSED OR IMPLIED, INCLUDING BUT NOT LIMITED TO THOSE OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE, OR NON-INFRINGEMENT. TO THE EXTENT ALLOWED BY LAW, IN NO
EVENT SHALL LIFE TECHNOLOGIES AND/OR ITS AFFILIATE(S) BE LIABLE, WHETHER IN CONTRACT, TORT,
WARRANTY, OR UNDER ANY STATUTE OR ON ANY OTHER BASIS FOR SPECIAL, INCIDENTAL, INDIRECT,
PUNITIVE, MULTIPLE OR CONSEQUENTIAL DAMAGES IN CONNECTION WITH OR ARISING FROM THIS
DOCUMENT, INCLUDING BUT NOT LIMITED TO THE USE THEREOF.
Important Licensing Information
This product may be covered by one or more Limited Use Label Licenses. By use of this product, you accept the
terms and conditions of all applicable Limited Use Label Licenses.
All trademarks are the property of Thermo Fisher Scientific and its subsidiaries, unless otherwise specified.
©2014 Thermo Fisher Scientific Inc. All rights reserved.
For support visit lifetechnologies.com/support or email techsupport@lifetech.com
lifetechnologies.com
4 September 2014
Countess®II
Countess®II FL
Automated Cell Counter
Catalog Numbers AMQAX1000, AMQAF1000
Pub. no. MAN0010826
Rev. A.0
Changing EVOS®Light Cubes
Note: For Countess®II FL (AMQAF100) only.
The Countess®II FL Automated Cell Counter can hold up to two EVOS®light cubes. Light
cubes do not come standard with the device and must be purchased separately.
To install a light cube:
1. Turn off the instrument by flipping the power switch to the OFF position and unplug it
from the electrical outlet.
2. Unlatch the back panel of the instrument.
3. Using the tool provided on the inside of the back panel, loosen
the two screws (red arrows) that secure the light cube to the
instrument.
4. Once the light cube is loosened, thread the tool into the center
hole in the cube (white arrow) and gently pull the light cube out of
the instrument.
5. To install a light cube, put the cube into one of the two empty slots.
6. Using the light cube tool, tighten the two screws to securely attach
the cube to the instrument.
7. Place the light cube tool into its slot inside the back panel, and then install the back
panel and secure it in its place.
8. Plug the instrument back into the electric outlet and turn it on by flipping the power
switch to the ON position.

5For Research Use Only. Not for use in diagnostic procedures.
QUICK REFERENCE
Limited Product Warranty
Life Technologies Corporation and/or its affiliate(s) warrant their products as set forth in the Life
Technologies’ General Terms and Conditions of Sale found on Life Technologies’ website at
www.lifetechnologies.com/termsandconditions.If you have any questions, please contact Life
Technologies at www.lifetechnologies.com/support.
Disclaimer
LIFE TECHNOLOGIES CORPORATION AND/OR ITS AFFILIATE(S) DISCLAIM ALL WARRANTIES WITH RESPECT TO
THIS DOCUMENT, EXPRESSED OR IMPLIED, INCLUDING BUT NOT LIMITED TO THOSE OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE, OR NON-INFRINGEMENT. TO THE EXTENT ALLOWED BY LAW, IN NO
EVENT SHALL LIFE TECHNOLOGIES AND/OR ITS AFFILIATE(S) BE LIABLE, WHETHER IN CONTRACT, TORT,
WARRANTY, OR UNDER ANY STATUTE OR ON ANY OTHER BASIS FOR SPECIAL, INCIDENTAL, INDIRECT,
PUNITIVE, MULTIPLE OR CONSEQUENTIAL DAMAGES IN CONNECTION WITH OR ARISING FROM THIS
DOCUMENT, INCLUDING BUT NOT LIMITED TO THE USE THEREOF.
Important Licensing Information
This product may be covered by one or more Limited Use Label Licenses. By use of this product, you accept the
terms and conditions of all applicable Limited Use Label Licenses.
All trademarks are the property of Thermo Fisher Scientific and its subsidiaries, unless otherwise specified.
©2014 Thermo Fisher Scientific Inc. All rights reserved.
For support visit lifetechnologies.com/support or email techsupport@lifetech.com
lifetechnologies.com
4 September 2014
Countess®II
Countess®II FL
Automated Cell Counter
Catalog Numbers AMQAX1000, AMQAF1000
Pub. no. MAN0010826
Rev. A.0
Changing EVOS®Light Cubes
Note: For Countess®II FL (AMQAF100) only.
The Countess®II FL Automated Cell Counter can hold up to two EVOS®light cubes. Light
cubes do not come standard with the device and must be purchased separately.
To install a light cube:
1. Turn off the instrument by flipping the power switch to the OFF position and unplug it
from the electrical outlet.
2. Unlatch the back panel of the instrument.
3. Using the tool provided on the inside of the back panel, loosen
the two screws (red arrows) that secure the light cube to the
instrument.
4. Once the light cube is loosened, thread the tool into the center
hole in the cube (white arrow) and gently pull the light cube out of
the instrument.
5. To install a light cube, put the cube into one of the two empty slots.
6. Using the light cube tool, tighten the two screws to securely attach
the cube to the instrument.
7. Place the light cube tool into its slot inside the back panel, and then install the back
panel and secure it in its place.
8. Plug the instrument back into the electric outlet and turn it on by flipping the power
switch to the ON position.
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