Supero SUPERSERVER 6016XT-TF User manual

SUPER
SUPERSERVER 6016XT-TF
SUPERSERVER 6016GT-TF
SUPERSERVER 6016GT-TF-TM2
SUPERSERVER 6016GT-TF-TC2
®
USER’S MANUAL
Revision 1.0

Manual Revision 1.0
Release Date: July 17, 2009
The information in this User’s Manual has been carefully reviewed and is believed to be accurate.
The vendor assumes no responsibility for any inaccuracies that may be contained in this document,
makes no commitment to update or to keep current the information in this manual, or to notify any
person or organization of the updates. Please Note: For the most up-to-date version of this
manual, please see our web site at www.supermicro.com.
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described in this manual at any time and without notice. This product, including software, if any,
and documentation may not, in whole or in part, be copied, photocopied, reproduced, translated or
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SPECULATIVE OR CONSEQUENTIAL DAMAGES ARISING FROM THE USE OR INABILITY TO
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FCC Statement: This equipment has been tested and found to comply with the limits for a Class
A digital device pursuant to Part 15 of the FCC Rules. These limits are designed to provide
reasonable protection against harmful interference when the equipment is operated in a commercial
environment. This equipment generates, uses, and can radiate radio frequency energy and, if not
installed and used in accordance with the manufacturer’s instruction manual, may cause harmful
interference with radio communications. Operation of this equipment in a residential area is likely
to cause harmful interference, in which case you will be required to correct the interference at your
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warning applies only to products containing CR (Manganese Dioxide) Lithium coin cells. “Perchlorate
Material-special handling may apply. See www.dtsc.ca.gov/hazardouswaste/perchlorate”
WARNING: Handling of lead solder materials used in this
product may expose you to lead, a chemical known to
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reproductive harm.
Unless you request and receive written permission from Super Micro Computer, Inc., you may not
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Copyright © 2009 by Super Micro Computer, Inc.
All rights reserved.
Printed in the United States of America

Preface
About This Manual
This manual is written for professional system integrators and PC technicians.
It provides information for the installation and use of the SuperServer 6016XT-
TF/6016GT-TF/6016GT-TF-TM2/6016GT-TF-TC2. Installation and maintenance
should be performed by experienced technicians only.
The SuperServer 6016XT-TF/6016GT-TF/6016GT-TF-TM2/6016GT-TF-TC2 is
based on the SC818GTQ-1400B 1U rackmount server chassis and the Super
X8DTG-DF serverboard. Please refer to our web site for an up-to-date list of sup-
ported operating systems, processors and memory.
Manual Organization
Chapter 1: Introduction
The first chapter provides a checklist of the main components included with the
server system and describes the main features of the Super X8DTG-DF serverboard
and the SC818GTQ-1400B chassis.
Chapter 2: Server Installation
This chapter describes the steps necessary to install the system into a rack and
check out the server configuration prior to powering up the system. If your server
was ordered without the processor and memory components, this chapter will refer
you to the appropriate sections of the manual for their installation.
Chapter 3: System Interface
Refer to this chapter for details on the system interface, which includes the functions
and information provided by the control panel on the chassis as well as other LEDs
located throughout the system.
Chapter 4: System Safety
You should thoroughly familiarize yourself with this chapter for a general overview
of safety precautions that should be followed when installing and servicing the
system.
iii
Preface

SUPERSERVER 6016XT-TF/6016GT-TF/TF-TM2/TF-TC2 User's Manual
iv
Chapter 5: Advanced Serverboard Setup
Chapter 5 provides detailed information on the X8DTG-DF serverboard, including
the locations and functions of connectors, headers and jumpers. Refer to this chap-
ter when adding or removing processors or main memory and when reconfiguring
the serverboard.
Chapter 6: Advanced Chassis Setup
Refer to Chapter 6 for detailed information on the SC818GTQ-1400B 1U rackmount
server chassis. You should follow the procedures given in this chapter when install-
ing, removing or reconfiguring Serial ATA or peripheral drives and when replacing
system power supply units and cooling fans.
Chapter 7: BIOS
The BIOS chapter includes an introduction to BIOS and provides detailed informa-
tion on running the CMOS Setup Utility.
Appendix A: BIOS Eror Beep Codes
Appendix B: Installing Windows
Appendix C: System Specifications

v
Preface
Notes

vi
Table of Contents
Chapter 1 Introduction
1-1 Overview .........................................................................................................1-1
1-2 Serverboard Features..................................................................................... 1-2
Processors ......................................................................................................1-2
Memory ...........................................................................................................1-2
Serial ATA ....................................................................................................... 1-2
PCI Expansion Slots....................................................................................... 1-2
Onboard Controllers/Ports .............................................................................. 1-2
IPMI.................................................................................................................1-3
Other Features................................................................................................ 1-3
1-3 Server Chassis Features ................................................................................ 1-3
System Power................................................................................................. 1-3
SATA Subsystem............................................................................................. 1-3
Front Control Panel.........................................................................................1-3
Cooling System............................................................................................... 1-3
1-4 GPU Subsystem..............................................................................................1-4
1-5 Contacting Supermicro....................................................................................1-6
Chapter 2 Server Installation
2-1 Overview .........................................................................................................2-1
2-2 Unpacking the System....................................................................................2-1
2-3 Preparing for Setup.........................................................................................2-1
Choosing a Setup Location............................................................................. 2-1
Rack Precautions............................................................................................ 2-2
Server Precautions..........................................................................................2-2
Rack Mounting Considerations....................................................................... 2-3
Ambient Operating Temperature................................................................ 2-3
Reduced Airflow .........................................................................................2-3
Mechanical Loading ................................................................................... 2-3
Circuit Overloading.....................................................................................2-3
Reliable Ground ......................................................................................... 2-3
2-4 Installing the System into a Rack ...................................................................2-4
Identifying the Sections of the Rack Rails......................................................2-4
Installing the Inner Rail Extensions ................................................................ 2-5
Assembling the Outer Rails............................................................................2-6
Installing the Outer Rails onto the Rack.........................................................2-7
Installing the Server into a Telco Rack........................................................... 2-9
SUPERSERVER 6016XT-TF/6016GT-TF/TF-TM2/TF-TC2 User's Manual

vii
Table of Contents
2-5 Checking the Serverboard Setup.................................................................. 2-10
2-6 Checking the Drive Bay Setup.......................................................................2-11
Chapter 3 System Interface
3-1 Overview .........................................................................................................3-1
3-2 Control Panel Buttons.....................................................................................3-1
Reset...............................................................................................................3-1
Power..............................................................................................................3-1
3-3 Control Panel LEDs ........................................................................................3-2
Universal Information LED..............................................................................3-2
NIC2................................................................................................................3-2
NIC1................................................................................................................3-3
HDD................................................................................................................. 3-3
Power..............................................................................................................3-3
3-4 SATA Drive Carrier LEDs................................................................................ 3-3
Chapter 4 System Safety
4-1 Electrical Safety Precautions..........................................................................4-1
4-2 General Safety Precautions............................................................................ 4-2
4-3 ESD Precautions.............................................................................................4-3
4-4 Operating Precautions .................................................................................... 4-4
Chapter 5 Advanced Serverboard Setup
5-1 Handling the Serverboard...............................................................................5-1
Precautions .....................................................................................................5-1
Unpacking .......................................................................................................5-2
5-2 Serverboard Installation.................................................................................. 5-2
5-3 Connecting Cables..........................................................................................5-3
Connecting Data Cables.................................................................................5-3
Connecting Power Cables .............................................................................. 5-3
Connecting the Control Panel......................................................................... 5-3
5-4 I/O Ports.......................................................................................................... 5-4
5-5 Installing the Processor and Heatsink ............................................................5-5
Installing an LGA1366 Processor ...................................................................5-5
Installing a CPU Heatsink...............................................................................5-7
Memory Support..............................................................................................5-8
5-6 Adding PCI Add-On Cards............................................................................5-10
5-7 Serverboard Details .......................................................................................5-11
X8DTG-DF Quick Reference ........................................................................5-12
5-8 Connector Definitions ...................................................................................5-13
5-9 Jumper Settings............................................................................................ 5-18

viii
5-10 Onboard Indicators........................................................................................5-20
5-11 SATA Ports....................................................................................................5-21
5-12 Installing Software.........................................................................................5-22
Supero Doctor III...........................................................................................5-23
Chapter 6 Advanced Chassis Setup
6-1 Static-Sensitive Devices..................................................................................6-1
Precautions .....................................................................................................6-1
6-2 Control Panel .................................................................................................. 6-2
6-3 System Cooling............................................................................................... 6-2
System Fan Failure......................................................................................... 6-3
6-4 Drive Bay Installation/Removal....................................................................... 6-4
Accessing the Drive Bays...............................................................................6-4
Peripheral Drive Installation............................................................................6-7
6-5 Installing the Air Shroud..................................................................................6-8
Checking the Air Flow..................................................................................... 6-8
6-6 Power Supply.................................................................................................. 6-9
Power Supply Failure...................................................................................... 6-9
Chapter 7 BIOS
7-1 Introduction...................................................................................................... 7-1
Starting BIOS Setup Utility..............................................................................7-1
How To Change the Configuration Data.........................................................7-1
Starting the Setup Utility................................................................................. 7-2
7-2 Main Setup...................................................................................................... 7-2
7-3 Advanced Setup Configurations......................................................................7-4
7-4 Security Settings........................................................................................... 7-25
7-5 Boot Configuration ........................................................................................ 7-26
7-6 Exit Options...................................................................................................7-27
Appendix A BIOS Error Beep Codes
Appendix B Installing Windows
Appendix C System Specifications
SUPERSERVER 6016XT-TF/6016GT-TF/TF-TM2/TF-TC2 User's Manual

Chapter 1
Introduction
1-1 Overview
The SuperServer 6016XT-TF/6016GT-TF/6016GT-TF-TM2/6016GT-TF-TC2 is a
GPU-optimized supercomputing server comprised of two main subsystems: the
SC818GTQ-1400B 1U server chassis and the X8DTG-DF Intel® Xeon® processor
5500 series serverboard. Please refer to our web site for information on operating
systems that have been certified for use with the system (www.supermicro.com).
Six 4-cm, hot-swap counter-rotating fans (FAN-0102L4)
•
Two 4-cm, hot-swap counter-rotating fans (FAN-0087L4)•
One air shroud (MCP-310-81802-0B)•
Two passive CPU heatsinks (SNK-P0037P)•
Riser Cards, 6016XT-TF:•
One RSC-R1UG-2E8 for two PCI-Express x8 cards, left side
One RSC-R1UG-2E8R for two PCI-Express x8 cards, right side
One RSC-R1U-E16R for PCI-Express x16 card, right side
Riser Cards, 6016GT Series:
•
One RSC-R1UG-E16 for PCI-Express x16 card, left side
One RSC-R1UG-E16R for PCI-Express x16 card, right side
One RSC-R1U-E16R for PCI-Express x16 card, right side
Two power cables for GPU cards, 6016GT series only (CBL-0333L)
•
SATA Accessories•
One SATA backplane (BPN-SAS-818TQ)
Three 35-cm SATA cables (CBL-0315L)
Three hot-swap drive carriers (MCP-220-00001-01)
One SGPIO cable (CBL-0157L)
One rail set (MCP-290-00020-N)
•
One Super Server 6016XT-TF/6016GT Series User's Manual•
Chapter 1: Introduction
1-1

1-2
SUPERSERVER 6016XT-TF/6016GT-TF/TF-TM2/TF-TC2 User's Manual
1-2 Serverboard Features
At the heart of the SuperServer 6016XT-TF/6016GT-TF/6016GT-TF-TM2/6016GT-
TF-TC2 lies the X8DTG-DF, a dual processor serverboard based on the Intel 5520
chipset. Below are the main features of the X8DTG-DF. (See Figure 1-1 for a block
diagram of the chipset).
Processors
The X8DTG-DF supports two Intel Xeon processor 5500 series. Please refer to the
serverboard description pages on our web site for a complete listing of supported
processors (www.supermicro.com).
Memory
The X8DTG-DF has 12 DIMM slots that can support up to 96 GB of registered
ECC DDR3-1333/1066/800 SDRAM or up to 24 GB of unbuffered ECC/non-ECC
DDR3-1333/1066/800 MHz SDRAM. Modules of the same size and speed are
recommended. See Chapter 5 for details.
Serial ATA
ASATAcontroller is integrated into the South Bridge (ICHR10) section of the chipset
to provide a six-port 3/Gbs SATA subsystem, which is RAID 0, 1, 5 and 10 sup-
ported. The SATA drives are hot-swappable units.
Note: The operating system you use must have RAID support to enable the hot-
swap capability and RAID function of the SATA drives.
PCI Expansion Slots
The X8DTG-DF has two PCI-Express 2.0 x16 slots and one PCI-Express 2.0 x4
slot. The 6016GT-TF-TM2 and 6016GT-TF-TC2 (and the 6016GT-TF if GPUs are
installed) can accommodate one low-profile PCI-E x4 card with a riser card in a
x16 slot. The 6016XT-TF without GPUs installed can support four full size PCI-E
x8 cards in the x16 slots and (with a riser card) one low-profile PCI-E x4 card in
a x16 slot.
Onboard Controllers/Ports
The color-coded I/O ports include one COM port (an additional COM header is
located on the serverboard), a VGA (monitor) port, two USB 2.0 ports, PS/2 mouse
and keyboard ports and two Gb Ethernet ports.

1-3
Chapter 1: Introduction
IPMI
IPMI (Intelligent Platform Management Interface) is a hardware-level interface speci-
fication that provides remote access, monitoring and administration for Supermicro
server platforms. IPMI allows server administrators to view a server’s hardware
status remotely, receive an alarm automatically if a failure occurs, and power cycle
a system that is non-responsive.
Other Features
Other onboard features that promote system health include onboard voltage moni-
tors, a chassis intrusion header, auto-switching voltage regulators, chassis and CPU
overheat sensors, virus protection and BIOS rescue.
1-3 Server Chassis Features
System Power
The SC818GTQ-1400B features a Gold Level 1400W high-efficiency power supply.
The AC power cord should be removed from the system before servicing or replac-
ing the power supply. See Chapter 6 for details.
SATA Subsystem
The SC818GTQ-1400B chassis includes three 3.5" drive bays, which may be used
to house hot-swappable SATA drives. RAID 0, 1, 5 and 10 are supported (RAID
5 is not supported with Linux OS).
Front Control Panel
The control panel provides a system monitoring and control interface. LEDs indicate
system power, HDD activity, network activity, system overheat, UID and power sup-
ply failure. A main power button and a system reset button are also included.
Cooling System
The SC818GTQ-1400B has an innovative cooling design that includes four 4-cm
counter-rotating PWM (Pulse Width Modulated) fans located in the middle section
of the chassis. Two additional fans are included to cool each GPU in the 6016GT
series servers. The power supply module also includes a cooling fan. All chassis
and power supply fans operate continuously. An air shroud channels the airflow
from the system fans to efficiently cool the processors and memory. See note on
the following page regarding fan control.

1-4
SUPERSERVER 6016XT-TF/6016GT-TF/TF-TM2/TF-TC2 User's Manual
1-4 GPU Subsystem
The 6016GT family of servers represents Supermicro's line of massively parallel
processing dual-GPU servers. Two NVIDIA® Tesla™ GPUs with multiple x16 non-
blocking native Gen2 PCI-Express connectivity place these systems at the forefront
of today's GPU computing solutions.
See the table below for the GPU specifications of each server. Refer to the NVIDIA
web site (www.nvidia.com) for details on Tesla GPUs.
GPU Specifications
Server Model GPU Subsystem
6016XT-TF Riser cards included for PCI expansion (see note below)
6016GT-TF 2x Gen 2.0 PCI-E x16 slots for double-width GPUs (GPUs not included)
6016GT-TF-TM2 2x Nvidia Tesla M1060 GPUs (preinstalled)
6016GT-TF-TC2 2x Nvidia Tesla C1060 GPUs (preinstalled)
Notes
The GPUs process complex image calculations and then route the data out through
the VGA port on the serverboard.
The 6016XT-TF can support a single standard size (single-width) GPU only.
The C1060 GPU model includes an active heatsink. Its fans work independently of
the system fans and cooling parameters.
The M1060 model comes with a passive heatsink. Cooling the GPU is a function
of overall system cooling.

1-5
Chapter 1: Introduction
Figure 1-1. Intel 5520 Chipset:
System Block Diagram
Note: This is a general block diagram. Please see Chapter 5 for details.
CPU #2
CPU #1
QPI
#1
#1
#1
#2
DDR3 DIMM
#2
#2
DDR3 DIMM
#1
#1
#1
DDR3 DIMM
#2
#2
#2
DDR3 DIMM
C
C
A
A
B
B
DD
EE
F
F
Intel 5520
IOH36D
Link1
ICH10R
ESI
PE
4-1
PE
5
Winbond
BMC/VGA
VGA CONN
DDR II
PCI
SATA 1
SATA 2
SATA 3
SATA 4
SATA
LPC
SPI
SST25
VF016
CLINK
CLINK
DMI
AD17
IRQC
REQ1
GNT1
RTL8201N PHY
Dedicated LAN
LPCIO W83527
ACPI
KBC
SATA 5
SATA 6
RMII
PCI-E x16
PCI-E x16
PCI-E x16
PCI-E x16
Ports
#7-10
Ports
#3-6
Ports
#1-2
PCI-E x4
Intel
82576
RJ45
PCI-E x16
RJ45
Link0

1-6
SUPERSERVER 6016XT-TF/6016GT-TF/TF-TM2/TF-TC2 User's Manual
1-5 Contacting Supermicro
Headquarters
Address: Super Micro Computer, Inc.
980 Rock Ave.
San Jose, CA 95131 U.S.A.
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
Web Site: www.supermicro.com
Europe
Address: Super Micro Computer B.V.
Het Sterrenbeeld 28, 5215 ML
's-Hertogenbosch, The Netherlands
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
[email protected] (Customer Support)
Asia-Pacific
Address: Super Micro, Taiwan
4F, No. 232-1, Liancheng Rd.
Chung-Ho 235, Taipei County
Taiwan, R.O.C.
Tel: [phone]
Fax: [phone]
Web Site: www.supermicro.com.tw
Technical Support:
Email: [email protected]
Tel: [phone], ext.132 or 139

Chapter 2: Server Installation
2-1
Chapter 2
Server Installation
2-1 Overview
This chapter provides a quick setup checklist to get your SuperServer up and
running. Following these steps in the order given should enable you to have the
system operational within a minimum amount of time. This quick setup assumes
that your system has come to you with the processors and memory preinstalled. If
your system is not already fully integrated with a serverboard, processors, system
memory etc., please turn to the chapter or section noted in each step for details on
installing specific components.
2-2 Unpacking the System
You should inspect the box the system was shipped in and note if it was damaged
in any way. If the server itself shows damage you should file a damage claim with
the carrier who delivered it.
Decide on a suitable location for the rack unit that will hold the server. It should
be situated in a clean, dust-free area that is well ventilated. Avoid areas where
heat, electrical noise and electromagnetic fields are generated. You will also need
it placed near a grounded power outlet. Read the Rack and Server Precautions in
the next section.
2-3 Preparing for Setup
The box the server was shipped in should include two sets of rail assemblies, two
rail mounting brackets and the mounting screws you will need to install the system
into the rack. Follow the steps in the order given to complete the installation process
in a minimum amount of time. Please read this section in its entirety before you
begin the installation procedure outlined in the sections that follow.
Choosing a Setup Location
Leave enough clearance in front of the rack to enable you to open the front door•
completely (~25 inches) and approximately 30 inches of clearance in the back
of the rack to allow for sufficient airflow and ease in servicing.This product is for
installation only in a Restricted Access Location (dedicated equipment rooms,
service closets and the like).

2-2
SUPERSERVER 6016XT-TF/6016GT-TF/TF-TM2/TF-TC2 User's Manual
!
!
Warnings and Precautions!
This product is not suitable for use with visual display work place devices•
acccording to §2 of the the German Ordinance for Work with Visual Display
Units.
Rack Precautions
Ensure that the leveling jacks on the bottom of the rack are fully extended to•
the floor with the full weight of the rack resting on them.
In single rack installation, stabilizers should be attached to the rack. In multiple
•
rack installations, the racks should be coupled together.
Always make sure the rack is stable before extending a component from the
•
rack.
You should extend only one component at a time - extending two or more si-
•
multaneously may cause the rack to become unstable.
Rack-mounted equipment should not be used as a shelf or work space.
•
Server Precautions
Review the electrical and general safety precautions in Chapter 4.•
Determine the placement of each component in the rack• before you install the
rails.
Install the heaviest server components on the bottom of the rack first, and then
•
work up.
Use a regulating uninterruptible power supply (UPS) to protect the server from
•
power surges, voltage spikes and to keep your system operating in case of a
power failure.
Allow the hot plug SATAdrives and power supply modules to cool before touch-
•
ing them.

Chapter 2: Server Installation
2-3
Always keep the rack's front door and all panels and components on the servers•
closed when not servicing to maintain proper cooling.
Rack Mounting Considerations
Ambient Operating Temperature
If installed in a closed or multi-unit rack assembly, the ambient operating tempera-
ture of the rack environment may be greater than the ambient temperature of the
room. Therefore, consideration should be given to installing the equipment in an
environment compatible with the manufacturer’s maximum rated ambient tempera-
ture (Tmra).
Reduced Airflow
Equipment should be mounted into a rack so that the amount of airflow required
for safe operation is not compromised.
Mechanical Loading
Equipment should be mounted into a rack so that a hazardous condition does not
arise due to uneven mechanical loading.
Circuit Overloading
Consideration should be given to the connection of the equipment to the power
supply circuitry and the effect that any possible overloading of circuits might have
on overcurrent protection and power supply wiring. Appropriate consideration of
equipment nameplate ratings should be used when addressing this concern.
Reliable Ground
A reliable ground must be maintained at all times. To ensure this, the rack itself
should be grounded. Particular attention should be given to power supply connec-
tions other than the direct connections to the branch circuit (i.e. the use of power
strips, etc.).

2-4
SUPERSERVER 6016XT-TF/6016GT-TF/TF-TM2/TF-TC2 User's Manual
2-4 Installing the System into a Rack
This section provides information on installing the SC818G chassis into a rack unit
with the rails provided. There are a variety of rack units on the market, which may
mean that the assembly procedure will differ slightly. You should also refer to the
installation instructions that came with the rack unit you are using.
Note: This rail will fit a rack between 26" and 33.5" deep.
Identifying the Sections of the Rack Rails
The chassis package includes two rack rail assemblies in the rack mounting kit.
Each assembly consists of two sections: an inner fixed chassis rail that secures
directly to the server chassis and an outer fixed rack rail that secures directly to
the rack itself.
Figure 2-1. Identifying the Sections of the Rack Rails
Inner Rail
Extension:
attach to the
chassis
Outer Rails:
slide together, then
attach to the front
and rear brackets
Inner Rail (preattached
to the chassis)
Front and Rear
Brackets: attach to
the rack

Chapter 2: Server Installation
2-5
Figure 2-2. Installing the Inner Rails
1
1
1
21
3
Installing the Inner Rail Extensions
The SC818G chassis includes a set of inner rack rails in two sections: inner rails (A)
and inner rail extensions (B). The inner rails are preattached and do not interfere
with normal use of the chassis if you decide not to install to a server rack. Attaching
the inner rail extensions to to the inner rails stabilizes the chassis within the rack.
Installing the Inner Rail Extensions
Place the inner rail extensions (B) over the preattached inner rails (A) which1. are attached to the side of the chassis. Align the hooks of the inner rail with
the rail extension holes. Make sure the extension faces "outward" just like the
inner rail.
Slide the extension toward the front of the chassis.2.
Secure the chassis with screws as illustrated.3.
Repeat steps 1-3 for the other inner rail extension.4.

2-6
SUPERSERVER 6016XT-TF/6016GT-TF/TF-TM2/TF-TC2 User's Manual
Figure 2-3. Assembling the Outer Rails
Assembling the Outer Rails
Each outer rail is in two sections that must be assembled before mounting on to
the rack.
Assembling the Outer Rails
Identify the left and right outer rails by examining the ends, which bend1. outward.
Slide the front section of the outer rail (A), into the rear section of the outer2. rail (B).
Secure to the
front of the rack
Secure to the
rear of the rack
Slide outer rails
together
Outer rail assembled
Assembling the sections of
the outer rail
1
A
1
B