TYAN Tempest i5400PW User manual

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Tempest i5400PW /// S5397
Version 1.3
Copyright
Copyright © 2008 MiTAC International Corporation. All rights reserved. TYAN is a
registered trademark of MiTAC International Corporation.
Trademark
All registered and unregistered trademarks and company names contained in this
manual are property of their respective owners including, but not limited to the
following.
TYAN, Tempest i5400PW are trademarks of MiTAC International Corporation.
Intel, Dual-Core Xeon 5100/5200 Series, Quad-Core Xeon 5300/5400 Series and
combinations thereof are trademarks of Intel Corporation in the U.S. and other
countries.
Microsoft, Windows, and the Windows logo are trademarks, or registered
trademarks of Microsoft Corporation in the United States and/or other countries.
Phoenix, Phoenix Technologies and Phoenix AwardTM are trademarks and/or
registered trademarks of Phoenix Technologies Ltd.
Notice
Information contained in this document is furnished by MiTAC International
Corporation and has been reviewed for accuracy and reliability prior to printing.
MiTAC assumes no liability whatsoever, and disclaims any express or implied
warranty, relating to sale and/or use of MiTAC products including liability or
warranties relating to fitness for a particular purpose or merchantability. MiTAC
retains the right to make changes to product descriptions and/or specifications at
any time, without notice. In no event will MiTAC be held liable for any direct or
indirect, incidental or consequential damage, loss of use, loss of data or other
malady resulting from errors or inaccuracies of information contained in this
document.

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Table of Contents
Check the box contents! 3
Chapter 1: Introduction
1.1 Congratulations 5
1.2 Hardware Specifications 5
Chapter 2: Board Installation
2.1 Board Image 8
2.2 Block Diagram 9
2.3 Board Parts, Jumpers and Connectors 10
2.4 Tips on Installing Motherboard in Chassis 20
2.5 Installing the Processor(s) 21
2.6 Installing the Memory 27
2.7 Attaching Drive Cables 30
2.8 Installing Add-in Cards 32
2.9 Installing Optional SO-DIMM Modules 33
2.10 Connecting External Devices 34
2.11 Installing the Power Supply 35
2.12 Finishing up 35
Chapter 3: BIOS Setup
3.1 About the BIOS 37
3.2 BIOS Main Menu 39
3.3 Advanced Menu 46
3.4 Security Menu 61
3.5 Power Menu 62
3.6 Boot Menu 63
3.7 Exit Menu 64
Chapter 4: Diagnostics
4.1 Beep Codes 65
4.2 Flash Utility 65
4.3 Phoenix BIOS Post Code 66
Appendix: SMDC Information 69
Glossary 71
Technical Support 79

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Check the box contents!
1x S5397 motherboard
1x 34-Pin floppy drive cable
1 x Ultra-DMA-133/100/66/33 IDE cable
3 x Serial ATA power cable
6 x Serial ATA cable
1 x COM Port cable
2 x mini SAS Cable (S5397WAG2NRF only)
1 x 12V Power Y-cable
1x USB Y-cable
1 x IEEE1394a cable
1 x Audio cable (optional, MiTAC P/N # 422774700001)
1 x S5397 user’s manual
1 x S5397 Quick Reference guide
1 x TYAN driver CD
1 x I/O shield
2 x CPU CEK (pre-installed)
1 x CPU heatsink mounting plate kit
If any of these items are missing, please contact your vendor/dealer for
replacement before continuing with the installation process.

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NOTE

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Chapter 1: Introduction
1.1 - Congratulations
You have purchased one of the most powerful server solutions. The Tempest
i5400PW (S5397) is a flexible Intel®platform for multiple applications, based on
Intel®i5400B (Seaburg-1600) MCH and 6321ESB chipsets.
Designed to support two Intel®Dual-Core Xeon®5100/5200 Series, Quad-Core
Xeon®5300/5400 Series processors, and max 128GB DDR2-533/667/800 FB-
DIMM memory, and featured with integrated Gigabit Ethernet LAN and four SATA2
ports, the S5397 offers exceptional performance and versatile solution for your
server platform.
Remember to visit TYAN’s Website at http://www.tyan.com. There you can find
information on all of TYAN’s products with FAQs, online manuals and BIOS
upgrades.
1.2 - Hardware Specifications
Processors
Dual LGA771 sockets
Supports up to two Dual-Core Intel®
Xeon®5100/5200 Series, Quad-
Core Intel®Xeon 5300/5400 Series
processors
1066/1333/1600 MT/s system bus
VRD 11.0
Chipset
Intel® i5400B (Seaburg-1600) MCH +
6321ESB chipset
Supports for 1066/1333/1600 MT/s
system bus
Winbond 83627HF super I/O chip
Expansion Slots
Two (2) PCI Express x16 slots (w/
x16 PCI-E Gen2 signals) from MCH
One (1) PCI Express x8 slot (w/ x4
signals)
Two (2) PCI-X 133/100MHz slots
One (1) PCI 32/33MHz slot (PCI
device component height limit =
9.2mm)
Six expansion slots in total
Integrated SATA II/SAS
Six (6) SATA2 ports from Intel ESB2
- Integrated RAID 0, 1, 5, and 10
support under windows
LSI 1068E SAS controller with PCI-
E x8 interface (S5397WAG2NRF
only)
- Two (2) mini SAS (4 in 1)
connectors
- RAID 0, 1 and 1E support
Integrated 2D PCI Graphics
XGI Z9S
PCI interface
32MB DDR2 memory
Integrated Audio
Realtek ALC262 audio CODEC
HDA 2.0 specification compliant
2 x 5 pin header for front panel
audio connector
CD-in connector
Optional audio cable for rear panel
audio jack

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Memory
Sixteen (16) 240-pin DDR2 FB-
DIMM* sockets on board
Maximum of 128GB DDR2-
533/667/800
Supports 1.8V FB-DIMM
Supports 1.5V/1.55V or 1.8V FB-
DIMM on Rev. 04 and beyond
(without mix-use of 1.5V/1.55V and
1.8V FB-DIMM)
*FB-DIMM: Fully Buffered DIMM
Integrated I/O Interface
One (1) IDE port
One (1) floppy port
Two (2) USB2.0 ports via cable
Two (2) Mini SAS (4 in 1) connectors
(S5397WAG2NRF only)
Six (6) SATA2 connectors
One (1) COM2 header
One (1) 2x9 pin TYFP header
One (1) 2x6 pin TYFP2 header (for
TYAN barebone)
One (1) 2x7 pin FAN header (for
TYAN barebone)
One (1) 3x2 pin LCD module header
Two (2) 2x5 pin 1394 header
Back Panel I/O Ports
One (1) stacked PS/2 mouse and
keyboard connectors
One (1) stacked USB2.0 x 2 ports
One (1) 9-pin serial port
One (1) 15-pin VGA port
Two (2) stacked RJ-45 x2 LAN ports
+ one (1) RJ-45
Form Factor
Extended ATX (12” x 13”) board size,
with proprietary CPU heatsink
mounting holes
EPS 12V/SSI (24+8+4+4 pin) power
connectors for 5x +12V input
Regulatory
FCC Class B (DoC)
European Community CE (DoC)
Server Management
Supports Server Management
TYAN SMDC M3295-2/M3296
support (SMDC card is optional)
System Management
Winbond W83793G Hardware
Monitoring IC
CPU thermal & voltage monitor
support
Six (6) 4-pin fan monitoring headers
PECI circuit for Woodcrest /
Clovertown / Wolfdale-DP /
Harpertown processor thermal
monitoring
Integrated PCI 1394
VT6308 PCI FireWire (IEEE1394)
controller
Two (2) IEEE1394 headers (via
cable)
Integrated LAN Controllers
One (x1) Intel Gilgal (82563EB)
PHY
Direct link to ESB2
Two (x2) Gigabit LAN ports
Two front panel LED supported via
TYFP2 header
BIOS
Phoenix BIOS on 8Mbit Flash ROM
Supports ACPI 1.0b
Serial Console Redirect
PXE via Ethernet, USB device boot
PnP, DMI 2.0 Power Management
User-configurable H/W monitoring
Auto-configuration of hard disk types
Multiple boot options
48-bit LBA support

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Chapter 2: Board Installation
You are now ready to install your motherboard. Before continuing with installation,
confirm that your chassis supports SSI EEB 3.6 and beyond specification with
removable stand-offs. The mounting hole pattern of the Tempest i5400PW (S5397)
is proprietary, and we supply CPU mounting plates to support an SSI EEB 3.6
compliant chassis.
How to install our products right… the first time
The first thing you should do is reading this user’s manual. It contains important
information that will make configuration and setup much easier. Here are some
precautions you should take when installing your motherboard:
(1) Ground yourself properly before removing your motherboard from the
antistatic bag. Unplug the power from your computer power supply and
then touch a safely grounded object to release static charge (i.e. power
supply case). For the safest conditions, TYAN recommends wearing a
static safety wrist strap.
(2) Hold the motherboard by its edges and do not touch the bottom of the
board, or flex the board in any way.
(3) Avoid touching the motherboard components, IC chips, connectors,
memory modules, and leads.
(4) Place the motherboard on a grounded antistatic surface or on the antistatic
bag that the board was shipped in.
(5) Inspect the board for damage.
The following pages include details on how to install your motherboard into your
chassis, as well as installing the processor, memory, disk drives and cables.
NOTE DO NOT APPLY POWER TO THE BOARD IF IT HAS BEEN
DAMAGED.

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2.1- Board Image
This picture is representative of the latest board revision available at the
time of publishing. The board you receive may or may not look exactly
like the above picture.

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2.2 - Block Diagram
Tempest i5400PW S5397 Block Diagram

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2.3 - Board Parts, Jumpers and Connectors
This diagram is representative of the latest board revision available at the time of
publishing. The board you receive may not look exactly like the above diagram.
Jumper Legend
 OPEN - Jumper OFF, without jumper cover
 CLOSED – Jumper ON, with jumper cover

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Jumper/Connector Function
J7/J12/J19/J21/J36/J40 4-pin FAN Connector
J3 Onboard HD Audio Header
J6 CD_IN Audio Header
J8 IPMB Header
J20 COM2 Header
J22/J23 1394 Header
J28 Front Panel Header
J33 TYAN Fan speed Header for Barebone
J37 TYAN TYFP2 Header (for TYAN Barebone Front
Panel)
J38 TYAN LCM Header for Barebone
J41 USB Front Panel Header
P1 Audio Jack Header
J2 Aux. Power Header for TYAN Riser Card
(M2061)
J18 PSMI Connector (Reserved for Barebone)
JP1 Clear CMOS Jumper
Pin 1-2 closed: Normal (Default)
Pin 2-3 closed: Clear
JP3 Onboard VGA Disable Jumper Pin 1-2 closed: Enable (Default)
Pin 2-3 closed: Disable
JP4 Onboard 1394 Disable Jumper
Pin 1-2 closed: Enable (Default)
Pin 2-3 closed: Disable
JP5 PCI-X Speed Select Jumper
Pin 1-2 closed: 133MHz (Default)
Pin 2-3 closed: 100MHz
JP6 Onboard SAS Disable Jumper Pin 1-2 closed: Enable (Default)
Pin 2-3 closed: Disable
JP7 FBD DIMM Voltage Select Jumper
Pin 1-2 closed: 1.5V/1.55V (Default)
Pin 2-3 closed: 1.8V

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J40
J36
J21 J28
J12
J7
J19
J20 J37

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J7/J12/J19/J21/J36/J40: 4-pin Fan Connector
TACH
PWN CTRL +12V
GND
1
Use these headers to connect the 4-pin cooling fans
to your motherboard to keep the system stable and
reliable. These connectors support the tachometer
monitoring and auto fan speed control.
J7: System Fan J12: System Fan
J19: CPUFAN0 J36: CPUFAN1
J21: System Fan J40: System Fan
J37: TYAN TYFP2 Header for Barebone
1 11
2 12
It is designed for BAREBONE use only.
Pin Signal Pin Signal
1 LAN1 LED+ 2 LAN1 LED-
3 LAN2 LED+ 4 LAN2 LED-
5 NC 6 NC
7 ID LED+ 8 ID LED-
9 ID SW+ 10 ID SW-
11 KEY 12 NC
J20: COM2 Header
10 2
9
1
Use these pin definitions to connect a port to COM2.
Pin Signal Pin Signal
1 DCD 2 DSR
3 RXD 4 RTS
5 TXD 6 CTS
7 DTR 8 RI
9 GND 10 KEY
J28: Front Panel Header
1
2
17
18
The Front Panel Header is used to connect some
control or signal wires from motherboard to chassis,
such as HDD LED, power LED, power button, and
reset button.
HDDLED+ 1 2 PWR LED+
HDDLED- 3 4 PWR LED-
GND 5 6 PWR SW+
Reset SW+ 7 8 GND
GND 9 10 Warning LED+
NMI 11 12 Warning LED-
5VSB 13 14 KEY
SMBus Data 15 16 GND
SMBus Clock 17 18 Intruder

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J2
J8 J33
J41
J38

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J41: USB Front Panel Header
1 9
2 10
Use these headers to connect to the USB devices via
the enclosed USB cable.
Pin Signal Pin Signal
1 PWR 5V 2 PWR 5V
3 USB_N1 4 USB_N2
5 USB_P1 6 USB_P2
7 GND 8 GND
9 KEY 10 GND
J33: Fan Speed Header for Barebone
1
2
13
14
It is designed for BAREBONE use only.
Pin Signal Pin Signal
1 FAN1 TACH 2 FAN2 TACH
3 FAN3 TACH 4 FAN4 TACH
5 FAN5 TACH 6 FAN6 TACH
7 FAN7 TACH 8 FAN8 TACH
9 FAN9 TACH 10 FAN10 TACH
11 GND 12 KEY
13 GND 14 PWM SIG
J8: IPMB Header
1
Pin Signal Pin Signal
1 SDAT 2 GND
3 SCLK 4 NC
J2: Aux. Power Header for TYAN Riser Card (M2061)
GND
12V 5V
GND
1
Pin Signal Pin Signal
1 12V 2 GND
3 GND 4 5V
J38: LCM Header for Barebone
21
5
6
It is designed for BAREBONE use only.
Pin Signal Pin Signal
1 VCC5 2 RXD
3 KEY 4 GND
5 VCC5SBY 6 TXD

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J6
J3
SATA3SATA4
SATA2
SATA1
SATA5
SATA0
P1
J22
J23

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J3: Onboard HD Audio Header
1 9
2 10
TYAN does not provide cables for this header. The audio cable comes
along with the 3rd party chassis supporting front audio jack module.
Pin Signal Pin Signal
1 MIC_L 2 GND
3 MIC_R 4 PRESENT
5 LINE_R 6 MIC_JD
7 SENSE 8 KEY
9 LINE_L 10 LINE_JD
SATA0/1/2/3/4/5: SATA RAID Connector
7
1
Connects to the Serial ATA ready drives via the Serial ATA
cable.
Pin 1 Pin 2 Pin 3 Pin 4 Pin 5 Pin 6 Pin 7
GND TXP TXN GND RXN RXP GND
J6: CD_IN Audio Header
1
4
TYAN does not provide cables for this header.
Pin Signal Pin Signal
1 CD_R 2 CD_GND
3 CD_GND 4 CD_L
P1: Audio Jack Header
2
1
11 12
Optional audio cable for rear panel audio jack is available for order (MiTAC
P/N# 422774700001).
Pin Signal Pin Signal
1 MIC_L 2 MIC_R
3 GND 4 MIC_JD
5 LINE-IN_L 6 LINE-IN_R
7 KEY 8 LINE-IN_JD
9 LINE-OUT_L 10 LINE-OUT_R
11 NC 12 LINE-OUT_JD
J22/J23: IEEE1394 Header
1 9
2 10
Pin Signal Pin Signal
1 XTPAP 2 XTPAM
3 GND 4 GND
5 XTPBP 6 XTPBM
7 PWR 12V 8 PWR 12V
9 KEY 10 GND

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JP7: FBD DIMM Voltage Select Jumper (Rev. 04 and beyond)
3
1
Pin 1-2 Closed: 1.5V/1.55V (Default)
13
Pin 2-3 Closed: 1.8V
NOTE: Do not mix 1.5V/1.55V and 1.8V FB-DIMMs in one system.
JP1
JP3
JP4
JP6
JP5
J18
JP7

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J18: PSMI Connector for Barebone
1
5
It is designed for BAREBONE use only.
Pin Signal Pin Signal
1 SMBCLK 2 SMBDAT
3 RSVD 4 GND
5 VCC3
JP1: Clear CMOS Jumper
3
1
Normal
(Default)
13
Clear
Use this jumper when you have forgotten your system/setup
password or need to clear the system BIOS settings.
How to clear the CMOS data:
-Power off system and disconnect the power supply
from the AC source
-Use jumper cap to close Pin 2 and 3 for several
seconds to Clear CMOS
-Replace jumper cap to close Pin 1 and 2 Reconnect
the power supply to the AC source
-Power on system
JP3: Onboard VGA Jumper
1
3
Pin 2-3 Closed: Disable
1
3
Pin 1-2 Closed: Enable (Default)
JP4: Onboard 1394 Jumper
3
1
Pin 1-2 Closed: Enable (Default)
13
Pin 2-3 Closed: Disable
JP5: PCI-X Speed Select Jumper
31
Pin 2-3 Closed: 100MHz
1
3
Pin 1-2 Closed: 133MHz (Default)
JP6: Onboard SAS Jumper
3
1
Pin 1-2 Closed: Enable (Default)
3
1
Pin 2-3 Closed: Disable

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2.4 - Tips on Installing Motherboard in Chassis
Before installing your motherboard, make sure your chassis has the necessary
motherboard support studs installed. These studs are usually metal and are gold
in color. Usually, the chassis manufacturer will pre-install the support studs. If
you are unsure of stud placement, simply lay the motherboard inside the chassis
and align the screw holes of the motherboard to the studs inside the case. If
there are any studs missing, you will know right away since the motherboard will
not be able to be securely installed.
Some chassis’ include plastic studs instead of metal. Although the plastic studs
are usable, TYAN recommends using metal studs with screws that will fasten
the motherboard more securely in place.
Below is a chart detailing what the most common motherboard studs look like
and how they should be installed.