Supero SuperServer 5017R-MF User manual

SUPERSERVER
5017R-MF
SUPER ®
USER’S MANUAL
1.0

The information in this User’s Manual has been carefully reviewed and is believed to be accurate.
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person or organization of the updates. Please Note: For the most up-to-date version of this
manual, please see our web site at www.supermicro.com.
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Any use or reproduction of this product is not allowed, except as expressly permitted by the terms
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SPECULATIVE OR CONSEQUENTIAL DAMAGES ARISING FROM THE USE OR INABILITY TO
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FCC Statement: This equipment has been tested and found to comply with the limits for a Class A
digital device pursuant to Part 15 of the FCC Rules. These limits are designed to provide reasonable
protection against harmful interference when the equipment is operated in a commercial environ-
ment. This equipment generates, uses, and can radiate radio frequency energy and, if not installed
and used in accordance with the manufacturer’s instruction manual, may cause harmful interference
with radio communications. Operation of this equipment in a residential area is likely to cause harmful
interference, in which case you will be required to correct the interference at your own expense.
California Best Management Practices Regulations for Perchlorate Materials: This Perchlorate warn-
ing applies only to products containing CR (Manganese Dioxide) Lithium coin cells. “Perchlorate
Material-special handling may apply. See www.dtsc.ca.gov/hazardouswaste/perchlorate”
WARNING: Handling of lead solder materials used in this
product may expose you to lead, a chemical known to the
State of California to cause birth defects and other repro-
ductive harm.
Manual Revision 1.0
Release Date: February 15, 2012
Unless you request and receive written permission from Super Micro Computer, Inc., you may not
copy any part of this document.
Information in this document is subject to change without notice. Other products and companies
referred to herein are trademarks or registered trademarks of their respective companies or mark
holders.
Copyright © 2012 by Super Micro Computer, Inc.
All rights reserved.
Printed in the United States of America

iii
Preface
Preface
About This Manual
This manual is written for professional system integrators and PC technicians. It
provides information for the installation and use of the SuperServer 5017R-MF.
Installation and maintenance should be performed by experienced technicians only.
The SuperServer 5017R-MF is a high-end server based on the SC512F-350B 1U
rackmount chassis and the Super X9SRi-F single processor serverboard.
Manual Organization
Chapter 1: Introduction
The first chapter provides a checklist of the main components included with the
server system and describes the main features of the X9SRi-F serverboard and
the SC512F-350B chassis.
Chapter 2: Server Installation
This chapter describes the steps necessary to install the SuperServer 5017R-MF
into a rack and check out the server configuration prior to powering up the system.
If your server was ordered without processor and memory components, this chapter
will refer you to the appropriate sections of the manual for their installation.
Chapter 3: System Interface
Refer here for details on the system interface, which includes the functions and
information provided by the control panel on the chassis as well as other LEDs
located throughout the system.

SUPERSERVER 5017R-MF User's Manual
iv
Chapter 4: System Safety
You should thoroughly familiarize yourself with this chapter for a general overview
of safety precautions that should be followed when installing and servicing the
SuperServer 5017R-MF.
Chapter 5: Advanced Serverboard Setup
Chapter 5 provides detailed information on the X9SRi-F serverboard, including the
locations and functions of connections, headers and jumpers. Refer to this chapter
when adding or removing processors or main memory and when reconfiguring the
serverboard.
Chapter 6: Advanced Chassis Setup
Refer to Chapter 6 for detailed information on the SC512F-350B server chassis.
You should follow the procedures given in this chapter when installing, removing or
reconfiguring SATA or peripheral drives and when replacing system power supply
modules and cooling fans.
Chapter 7: BIOS
The BIOS chapter includes an introduction to BIOS and provides detailed informa-
tion on running the CMOS Setup Utility.
Appendix A: POST Error Beep Codes
Appendix B: UEFI BIOS Recovery Instructions
Appendix C: System Specifications

v
Preface
Notes

vi
Table of Contents
Chapter 1 Introduction
1-1 Overview .........................................................................................................1-1
1-2 Motherboard Features.....................................................................................1-2
Processors ......................................................................................................1-2
Memory ...........................................................................................................1-2
Serial ATA........................................................................................................1-2
SCU SATA ...................................................................................................... 1-2
I/O Ports..........................................................................................................1-2
Intel®Intelligent Power Node Manager (NM).................................................. 1-2
1-3 Server Chassis Features ................................................................................1-3
Serial ATA Subsystem..................................................................................... 1-3
Control Panel .................................................................................................. 1-3
Cooling System............................................................................................... 1-3
1-4 Contacting Supermicro....................................................................................1-5
Chapter 2 Server Installation
2-1 Overview .........................................................................................................2-1
2-2 Unpacking the System....................................................................................2-1
2-3 Preparing for Setup......................................................................................... 2-1
Choosing a Setup Location............................................................................. 2-2
Rack Precautions............................................................................................ 2-2
Server Precautions..........................................................................................2-2
Rack Mounting Considerations....................................................................... 2-3
Ambient Operating Temperature................................................................2-3
Reduced Airflow .........................................................................................2-3
Mechanical Loading ................................................................................... 2-3
Circuit Overloading..................................................................................... 2-3
Reliable Ground ......................................................................................... 2-3
2-4 Installing the System into a Rack ...................................................................2-4
Basic Installation Procedure ...........................................................................2-4
Installing with Rackmount Kit..........................................................................2-5
2-5 Checking the Serverboard Setup.................................................................... 2-9
2-6 Checking the Drive Bay Setup.............................................................................
Chapter 3 System Interface
3-1 Overview .........................................................................................................3-1
3-2 Control Panel Buttons..................................................................................... 3-1
SUPERSERVER 5017R-MF User's Manual

vii
Table of Contents
Reset............................................................................................................... 3-1
Power..............................................................................................................3-1
3-3 Control Panel LEDs ........................................................................................3-2
Overheat/Fan Fail ...........................................................................................3-2
NIC2................................................................................................................3-2
NIC1................................................................................................................3-2
HDD................................................................................................................. 3-3
Power..............................................................................................................3-3
Chapter 4 System Safety
4-1 Electrical Safety Precautions..........................................................................4-1
4-2 General Safety Precautions............................................................................ 4-2
4-3 ESD Precautions............................................................................................. 4-3
4-4 Operating Precautions .................................................................................... 4-4
Chapter 5 Advanced Motherboard Setup
5-1 Handling the Motherboard ..............................................................................5-1
Precautions .....................................................................................................5-1
Unpacking .......................................................................................................5-1
5-2 Processor and Heatsink Installation................................................................5-2
Installing an LGA 2011 Processor................................................................... 5-2
Installing a Passive CPU Heatsink .................................................................5-5
Removing the Heatsink...................................................................................5-5
5-3 Connecting Cables.......................................................................................... 5-7
Connecting Data Cables.................................................................................5-7
Connecting Power Cables .............................................................................. 5-7
Connecting the Control Panel.........................................................................5-7
5-4 I/O Ports..........................................................................................................5-8
5-5 Installing Memory............................................................................................ 5-9
Memory Population Guidelines..................................................................... 5-10
5-6 Adding PCI Cards......................................................................................... 5-12
5-7 Motherboard Details...................................................................................... 5-13
X9SRi-F Quick Reference............................................................................. 5-13
5-8 Connector Definitions ...................................................................................5-15
5-9 Jumper Settings............................................................................................ 5-22
5-10 Onboard Indicators........................................................................................5-24
5-11 SATA Drive Connections............................................................................... 5-25
5-12 Installing Drivers............................................................................................ 5-26
SuperDoctor III.............................................................................................. 5-27

viii
SUPERSERVER 5017R-MF User's Manual
Chapter 6 Advanced Chassis Setup
6-1 Static-Sensitive Devices..................................................................................6-1
Precautions .....................................................................................................6-1
6-2 Control Panel .................................................................................................. 6-2
6-3 System Fans................................................................................................... 6-3
System Fan Failure.........................................................................................6-3
6-4 Drive Bay Installation/Removal....................................................................... 6-4
Accessing the Drive Bays...............................................................................6-4
DVD-ROM Drive Installation ...........................................................................6-5
6-5 Power Supply.................................................................................................. 6-7
Power Supply Failure......................................................................................6-7
Chapter 7 BIOS
7-1 Introduction...................................................................................................... 7-1
Starting BIOS Setup Utility..............................................................................7-1
How To Change the Configuration Data......................................................... 7-1
How to Start the Setup Utility .........................................................................7-2
7-2 Main Setup...................................................................................................... 7-2
7-3 Advanced Setup Configurations......................................................................7-4
7-4 Event Logs....................................................................................................7-19
7-5 IPMI............................................................................................................... 7-20
7-6 ISCSI............................................................................................................. 7-22
7-7 Boot Settings ................................................................................................ 7-23
7-8 Security Settings........................................................................................... 7-24
7-9 Exit Options................................................................................................... 7-25
7-10 Main Configuration Page .............................................................................. 7-26
Appendix A POST Error Beep Codes
Appendix B UEFI BIOS Recovery Instructions
Appendix C System Specifications

Chapter 1
Introduction
1-1 Overview
The SuperServer 5017R-MF is a high-end server comprised of two main sub-
systems: the SC512F-350B 1U server chassis and the X9SRi-F single processor
motherboard. Please refer to our web site for information on operating systems that
have been certified for use with the system (www.supermicro.com).
In addition to the motherboard and chassis, various hardware components have
been included with the 5017R-MF, as listed below:
• Two sets of 4-cm counter-rotating fans (FAN-0087L4)
• One passive CPU heatsink (SNK-P0047P)
• One air shroud for 1U system (MCP-310-19007-0N)
• One riser card for one PCI-E 3.0 x16 PCI add-on card (RSC-RR1U-E16)
• One rackmount kit (MCP-290-00050-0N)
• One CD containing drivers and utilities
• SuperServer 5017R-MF User's Manual
Chapter 1: Introduction
1-1

1-2
SUPERSERVER 5017R-MF User's Manual
1-2 Motherboard Features
At the heart of the SuperServer 5017R-MF lies the X9SRi-F, a single processor
motherboard based on Intel's C600 chipset. Below are the main features of the
X9SRi-F (see Figure 1-1 for a block diagram of the chipset).
Processors
The X9SRi-F supports a single Intel®Xeon®E5-2600/E5-1600 Series processor
in an LGA 2011 socket. Please refer to the motherboard description pages on our
web site for a complete listing of supported processors.
Memory
The X9SRi-F has eight DIMM sockets that can support up to 256 GB of DDR3-
1600/1333/1066 ECC R/LRDIMMs (LRDIMM = Reduced Load DIMMs) or up to
64GB of ECC UDIMMs. Please refer to Chapter 5 for installing memory.
Serial ATA
An on-chip SATA controller is integrated into the X9SRi-F to provide two 6 Gb/sec
SATA3 ports and four 3 Gb/sec SATA2 ports. The 5017R-MF supports a single
(internal) SATA hard drive.
SCU SATA
An additional SCU SATA controller integrated into the chipset provides four SATA 2
ports. RAID 0, 1 and 10 are supported. The SATA drives are hot-swappable units.
Note: You must have RAID set up to enable the hot-swap capability of the SATA
drives. Documentation on RAID setup guidelines can be found on our web site.
I/O Ports
The color-coded I/O ports include one COM port, a VGA(monitor) port, two USB 2.0
ports, PS/2 mouse and keyboard ports and two gigabit Ethernet ports. A dedicated
IPMI LAN port is also included.
Intel®Intelligent Power Node Manager (NM)
The Intel®Intelligent Power Node Manager (IPNM) provides your system with
real-time thermal control and power management for maximum energy efficiency.
Although IPNM Specification Version 1.5 is supported by the BMC (Baseboard
Management Controller), your system must also have IPNM-compatible Manage-
ability Engine (ME) firmware installed to use this feature.

1-3
Chapter 1: Introduction
1-3 Server Chassis Features
The SC512F-350B is a short depth (14.5") 1U rackmount server chassis. The fol-
lowing is a general outline of the main features of the SC512F-350B chassis.
System Power
When configured as the SuperServer 5017R-MF, the SC512F-350B chassis features
a single power supply.
Serial ATA Subsystem
The SC512F-350B chassis is designed to support one internal SATA hard drive.
The internal drive is not hot-swappable.
Control Panel
The SC512F-350B's control panel provides important system monitoring and con-
trol information. LEDs indicate power on, network activity, hard disk drive activity,
overheat warning and fan failure. The control panel also includes a main power
button and a reset button.
Cooling System
The SC512F-350B chassis has an innovative cooling design that features an air
shroud and two 4-cm counter-rotating fans with user-defined fan speed control. (Fan
speed may be defined with a BIOS setting.)

1-4
SUPERSERVER 5017R-MF User's Manual
Figure 1-1. Intel C600 Chipset:
System Block Diagram
Note: This is a general block diagram. Please see Chapter 5 for details.
SLOT 5
i350/x540
SLOT 6
#8
COM1
Rear
6 PHASE
800/1066/1333 800/1066/1333
DDRIII
VR12 #0-4
#0-3
#0-2
#0-1
DDRIII
#0-8
#0-7
#0-6
#0-5
#6
#7
COM2
Header
SLOT 4
USB 2.0
6.0 Gb/S
Sandybridge-EP
PCH
PATSBURG
SSB-D
PCI-E X16 G3
BIOS SIO
NCT6776F
LPC
USB
#0
#1
#2
#4
#5
SATA
#0
#1
2 Rear
6 Front
1 Type-A
PCI-E X4 G2
PCI-E X8
LAN#1/2
PCI-E X16
8 SNB CORE
DDR-III
PCI-E X4 G3
#2 #3C/D #1B #1A
DMI2
#3A/B
PCI-E X8 G3
PXH
PCI-E X4
SLOT 1/2/3
PCI-X
PCI-X
#9
#4
#5
3.0 Gb/S
SATA
#2
#3
6.0 Gb/S
SAS
#0
#1
#2
#3
#4
#5
#6
#7
DMI2 4GB/s
BMC
WPCM450
SPI
TPM
HEADER
PCI
DDR2
VGA PHY
RJ45
RMII
RJ45
RJ45
PCI-E X8
PCI-E X8 G3
#1/2/3/4
#5/6/7/8
#12
#13
PS/2
KB/MS

1-5
Chapter 1: Introduction
1-4 Contacting Supermicro
Headquarters
Address: Super Micro Computer, Inc.
980 Rock Ave.
San Jose, CA 95131 U.S.A.
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
Web Site: www.supermicro.com
Europe
Address: Super Micro Computer B.V.
Het Sterrenbeeld 28, 5215 ML
's-Hertogenbosch, The Netherlands
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
[email protected] (Customer Support)
Asia-Pacific
Address: Super Micro Computer, Inc.
4F, No. 232-1, Liancheng Rd.
Chung-Ho 235, Taipei County
Taiwan, R.O.C.
Tel: [phone]
Fax: [phone]
Web Site: www.supermicro.com.tw
Technical Support:
Email: [email protected]
Tel: [phone]

1-6
SUPERSERVER 5017R-MF User's Manual
Notes

Chapter 2: Server Installation
2-1
Chapter 2
Server Installation
2-1 Overview
This chapter provides a quick setup checklist to get your SuperServer 5017R-MF
up and running. Following the steps in the order given should enable you to have
the system operational within a minimal amount of time. This quick setup assumes
that your system has come to you with the processor and memory preinstalled. If
your system is not already fully integrated with a serverboard, processor, system
memory etc., please turn to the chapter or section noted in each step for details on
installing specific components.
2-2 Unpacking the System
You should inspect the box the server was shipped in and note if it was damaged
in any way. If the server itself shows damage, you should file a damage claim with
the carrier who delivered it.
Decide on a suitable location for the rack unit that will hold the server. It should
be situated in a clean, dust-free area that is well ventilated. Avoid areas where
heat, electrical noise and electromagnetic fields are generated. You will also need
it placed near a grounded power outlet. Read the Rack and Server Precautions in
the next section.
2-3 Preparing for Setup
The SuperServer 5017R-MF does not ship with a rack rail hardware package as
the system can be rack mounted without the use of rails. An optional rack rail
package is available if you wish to order from Supermicro. Follow the steps in the
order given to complete the installation process in a minimal amount of time. Please
read this section in its entirety before you begin the installation procedure outlined
in the sections that follow.

2-2
SUPERSERVER 5017R-MF User's Manual
Choosing a Setup Location
• Leave enough clearance in front of the rack to enable you to open the front door
completely (~25 inches) and approximately 30 inches of clearance in the back
of the rack to allow for sufficient airflow and ease in servicing.This product is for
installation only in a Restricted Access Location (dedicated equipment rooms,
service closets and the like).
• This product is not suitable for use with visual display work place devices
acccording to §2 of the the German Ordinance for Work with Visual Display
Units.
!
!
Warnings and Precautions!
Rack Precautions
• Ensure that the leveling jacks on the bottom of the rack are fully extended to
the floor with the full weight of the rack resting on them.
• In single rack installation, stabilizers should be attached to the rack. In multiple
rack installations, the racks should be coupled together.
• Always make sure the rack is stable before extending a component from the
rack.
• You should extend only one component at a time - extending two or more si-
multaneously may cause the rack to become unstable.
Server Precautions
• Review the electrical and general safety precautions in Chapter 4.
• Determine the placement of each component in the rack before you install the
rails.
• Install the heaviest server components on the bottom of the rack first, and then
work up.
• Use a regulating uninterruptible power supply (UPS) to protect the server from
power surges, voltage spikes and to keep your system operating in case of a
power failure.

Chapter 2: Server Installation
2-3
• Allow the hot plug SATA drives and power supply modules to cool before touch-
ing them.
• Always keep the rack's front door and all panels and components on the servers
closed when not servicing to maintain proper cooling.
Rack Mounting Considerations
Ambient Operating Temperature
If installed in a closed or multi-unit rack assembly, the ambient operating tempera-
ture of the rack environment may be greater than the ambient temperature of the
room. Therefore, consideration should be given to installing the equipment in an
environment compatible with the manufacturer’s maximum rated ambient tempera-
ture (Tmra).
Reduced Airflow
Equipment should be mounted into a rack so that the amount of airflow required
for safe operation is not compromised.
Mechanical Loading
Equipment should be mounted into a rack so that a hazardous condition does not
arise due to uneven mechanical loading.
Circuit Overloading
Consideration should be given to the connection of the equipment to the power
supply circuitry and the effect that any possible overloading of circuits might have
on overcurrent protection and power supply wiring. Appropriate consideration of
equipment nameplate ratings should be used when addressing this concern.
Reliable Ground
A reliable ground must be maintained at all times. To ensure this, the rack itself
should be grounded. Particular attention should be given to power supply connec-
tions other than the direct connections to the branch circuit (i.e. the use of power
strips, etc.).

2-4
SUPERSERVER 5017R-MF User's Manual
2-4 Installing the System into a Rack
This section provides information on installing the SuperServer 5017R-MF into a
rack.
Note: the server may be installed as is - rack hardware is optional.
Basic Installation Procedure
The 5017R-MF server comes with two rack mounting brackets, which are located
on each side at the front of the chassis. To mount the system into a rack, simply
screw these brackets directly to the front of the rack (two screws for each bracket).
As Figure 2-1 shows, the brackets can be located at the front of the chassis (left
figure) or moved approximately one-third to the rear of the chassis (right figure).
Figure 2-1. Identifying the Sections of the Rack Rails

Chapter 2: Server Installation
2-5
Installing with Rackmount Kit
This is a guideline for installing the unit into a rack with the optional rack kit (MCP-
290-00004-03). You should also refer to the installation instructions that came with
the rack unit you are using. Be aware that there are a variety of rack units on the
market, which may mean the assembly procedure will differ slightly.
The rack hardware includes two assemblies that consists of two sections: an inner
rail that secures to the chassis and an outer rail that secures directly to the rack
itself (see Figure 2-1).
Installing the Chassis Rails
1. Detach the two rail sections from each other by depressing the locking tab
on the inner rail to release it from its locked position, then pull the two rails
completely apart.
2. Repeat step 1 for the remaining rail assembly.
3. Position the fixed chassis rail sections you just removed along the side of the
chassis making sure the three screw holes line up. Note that the rails are left/
right side specific.
4. Screw the rail securely to the side of the chassis (see Figure 2-2). Repeat
this procedure for the other rail on the other side of the chassis. You will also
need to attach the rail brackets when installing into a telco rack.
Locking Tabs: Both chassis rails have a locking tab, which serves two functions.
The first is to lock the server into place when installed and pushed fully into the
rack, which is its normal position. Secondly, these tabs also lock the server in place
when fully extended from the rack. This prevents the server from coming completely
out of the rack when you pull it out for servicing.

2-6
SUPERSERVER 5017R-MF User's Manual
Installing the Rack Rails
1. Determine where you want to place the 5017R-MF in the rack (see Rack and
Server Precautions in Section 2-3).
2. Position the fixed rack rail/sliding rail guide assemblies at the desired location
in the rack, keeping the sliding rail guide facing the inside of the rack.
3. Screw the assembly securely to the rack using the brackets provided.
4. Attach the other assembly to the other side of the rack, making sure that both
are at the exact same height and with the rail guides facing inward.
Installing the Server into the Rack
You should now have rails attached to both the chassis and the rack unit. The next
step is to install the server into the rack.
1. Line up the rear of the chassis rails with the front of the rack rails.
2. Slide the chassis rails into the rack rails, keeping the pressure even on both
sides (you may have to depress the locking tabs when inserting). See Figure
2-3.
3. When the server has been pushed completely into the rack, you should hear
the locking tabs "click".
Figure 2-2. Installing Chassis Rails