PacBio Sequel Installation and operating manual

For Research Use Only. Not for use in diagnostic procedures.
P/N 100-764-700-02
© Copyright 2015 - 2016, Pacific Biosciences of California, Inc. All rights reserved.
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Pacific Biosciences of California, Inc.
1380 Willow Road
Menlo Park, CA 94025
www.pacificbiosciences.com
Notice of Equipment Class (Korea)
For Class A

Page 1
Introduction This guide provides important safety information on the Sequel™ System
from Pacific Biosciences. It also provides product compliance and regula-
tory statements. Read this document before performing any proce-
dures on the Sequel System.
Safety Words Four safety alert words may appear in Pacific Biosciences’ documents.
Each alert word represents a certain level of observation or action:
IMPORTANT!
Indicates information that is necessary for proper system operation,
accurate chemistry kit use, or safe use of a chemical.
CAUTION!
Indicates a potentially hazardous event that, if not avoided, may result
in minor or moderate injury. It may also be used to alert against unsafe
practices.
WARNING!
Indicates a potentially hazardous event that, if not avoided, could result
in death or serious injury.
DANGER!
Indicates an imminently hazardous event that, if not avoided, will result
in death or serious injury. This alert word is limited to the most extreme
situations.
Except for IMPORTANT!, each safety alert word will appear with an
open triangle figure that contains a hazard symbol. These symbols are
similar to the hazard symbols that are affixed to the instrument.
Product
Certifications and
Compliance
The Sequel System is certified to the following standards:
• UL STD 61010-1
• CSA STD C22.2 No 61010-1
• EN/IEC 61010-1
• IEC 61326-1
• IEC/EN 60825-1
The Sequel System complies with the following EU Directives:
• Low Voltage Directive 2006/95/EC
• EMC Voltage Directive 2004/108/EC
• ROHS2 Directive 2011/65/EU

Page 2
Compliance and
Regulatory
Markings
The PacBio®Sequel System is labeled with the following compliance
and regulatory markings.
Symbol Description
This label assures that the product meets requirements for
all relevant EU directives.
This label assures that the product meets Chinese RoHS
regulatory requirements.
This label assures that the product is compliant with safety
standards and has been tested and certified by a third
party organization.
Korea compliance. Equipment for professional use (Class
A). The seller or end user of the device with EMC
requirements should use the equipment with caution ad
only under professional environments.
The RCM label indicates the product is compliant with the
applicable technical standards for Electromagnetic
Compatibility (EMC). The RCM mark is a certification
trademark registered to ACMA (for Australia and New
Zealand).
Symbols on
Instrument
The following are symbols or labels that may be affixed to the instru-
ment.
Symbol Description
Designates the On position of the main power switch
Designates the Off position of the main power switch
Designates a standby switch by which the instrument is
switched on to the Standby condition. Hazardous voltage
may be present if this switch is on standby
Designates a terminal that may be connected to the signal
ground reference of another instrument. This is not a
protected ground terminal

Page 3
Safety Symbols The following are safety symbols or labels that may appear on the
instrument. Each symbol may appear by itself or with other text that
explains the relevant hazard.
Symbol Description
Indicates you should consult and follow all operating
instructions when working in areas marked with this
symbol. Proceed with appropriate caution.
Indicates the presence of a laser inside the instrument.
Proceed with appropriate caution when the flow cell
compartment door is open. The flow cell area contains
components that could cause injury when the front door is
open. When this is the case, the X, Y, and Z motors are
disabled by the instrument operating software.
Indicates the presence of an electrical shock hazard and/
or high leakage current. Earth connection is essential
before connecting supply. Proceed with appropriate
caution.
Environmental
Symbols on
Instrument Symbol Description
Designates that you should not dispose of product as
unsorted municipal waste. You must follow local municipal
waste ordinances and regulations for proper disposal to
reduce the environmental impact of waste electrical and
electronic equipment (WEEE)
This environmental symbol or label may appear on the instrument.
Safety Symbols on
Instrument
The Sequel System is a Class 1 Laser Product that contains two Class
4
lasers.
Designates a protective grounding terminal that must be
connected to earth ground before any other electrical
connections are made to the instrument
Designates a terminal that can receive or supply
alternating current or voltage
Symbol Description

Page 4
Class 4 lasers present an eye hazard from both direct and diffuse
reflections. Avoid eye or skin exposure to either direct or reflected
Class 4 laser radiation. Class 4 lasers can cause combustion of flam-
mable materials. They can also produce serious burns and injury from
direct exposure to skin.
Do not operate the instrument with any of the panels removed. When
the front door of the instrument is open, the laser beam is blocked via
safety interlock switches. If you operate the instrument with any of the
panels removed, you risk exposure to direct or reflected laser light.
CAUTION! Laser testing and service maintenance must only be per-
formed by authorized and trained Pacific Biosciences personnel. Only
PacBio trained personnel are authorized to remove the instrument
panels.

Page 5
Safety Practices A safety representative from your facility must ensure that there are
established safety practices and policies to protect laboratory person-
nel from potential hazards.
Required Safety
Equipment
Your laboratory should have specific safety devices and equipment to
protect personnel from any sources of hazardous chemicals, radiation
(for example, lasers, radioisotopes, radioactive wastes, and contami-
nated equipment), and potentially infectious biological material that
may be present in the area where the Pacific Biosciences service rep-
resentative will work.
The following safety protection and equipment must be available at the
installation site:
• Appropriate fire extinguisher:
– The types and sizes of fire extinguishers shall be suitable for use on
electrical and chemical fires as specified in current codes, regulations/
or standards, and with approval of the Fire Marshall or other authority
having jurisdiction.
– The installation of appropriate fire extinguishers shall be in addition to
other fire-protection systems and not as a substitute or alternative to
them.
– Overhead sprinklers can be used if the water heads are not located
above or directed at the equipment or it’s fan intake/exhasut path.
• Eyewash.
• Safety shower.
• Eye and hand protection.
• Adequate ventilation, including vent line/fume hood, if applicable.
• Biohazard waste container, if applicable.
• First-aid equipment.
• Spill cleanup equipment.
• Applicable SDS.
Personnel Safety
Considerations
Facility personnel (especially laboratory personnel) should be familiar
with the emergency power shut-down procedure and with how to notify
the fire department.
Laboratory personnel are adequately protected from electrical shock,
however, all personnel trained in first aid for electrical shock and burns
should always be available.
Unauthorized personnel should not remove any of the system’s pan-
els. The panels are provided for system cooling and protection of elec-
tronics.

Page 6
Site Preparation
Considerations
The overall site preparation recommendations are summarized below:
• Ensure your site is appropriately stocked with the needed materials. Note
that only supported consumables and accessories may be used with the
Sequel System.
• In cases of limited user accessibility to the instrument work deck or
controls, appropriate accommodations must be made by the customer
site according to local regulations.

Page 6
Chemical Hazard
Warnings
Before handling any chemicals, refer to the Safety Data Sheet (SDS)
provided by the manufacturer, and observe all relevant precautions.
The system is used to conduct scientific experiments that require the
use of the following reagents:
• Template Prep Buffer
•ATPHi
•dNTP
• End Repair Mix
• Adapter
•ATPLo
• Ligase
• ExoIII
• ExoVII
•dATP
•Klenow
• OS Enzyme
•DTT
• MagBeads
• MagBead Binding Buffer
• MagBead Wash Buffer
• AMPure PB beads
• SMRT Cell Oil
These items are transferred from disposable tips to SMRT®Cells
which are then transferred to an internal waste bin in an automated
fashion. Once the system’s internal waste bin is full, it must be emptied
by the user. The system does not generate any additional waste.
About Safety Data
Sheets
Chemical manufacturers supply current Safety Data Sheets (SDS) with
shipments of hazardous chemicals to new customers. They also pro-
vide an SDS with the first shipment of a hazardous chemical to a cus-
tomer after an SDS has been updated. Safety Data Sheets provide the
safety information you need to store, handle, transport, and dispose of
the chemicals safely.
Each time you receive a new SDS packaged with a hazardous chemi-
cal, be sure to replace the appropriate SDS (supplied by Pacific Biosci-
ences) in your files.
To Obtain an SDS Any chemical supplied by Pacific Biosciences will have an SDS avail-
able on our website: www.pacificbiosciences.com.
For the SDS of chemicals not distributed by Pacific Biosciences, con-
tact the chemical manufacturer.
C HEMICAL S AFETY

Page 7
General Chemical
and Chemical
Waste Safety
Guidelines
To minimize the hazards of chemicals and chemical waste:
• Read and understand each Safety Data Sheet provided by the chemical
manufacturer before you store, handle, work with, or dispose of any
chemicals, chemical waste, or hazardous materials.
• Minimize contact with chemicals. Wear appropriate personal protective
equipment when handling chemicals (for example, safety glasses, gloves,
or protective clothing). For additional safety guidelines, consult the SDS.
• Minimize the inhalation of chemicals. Do not leave chemical containers
open. Use only with adequate ventilation (for example, fume hood). For
additional safety guidelines, consult the SDS.
• Provide primary and secondary waste containers. A primary waste
container holds the immediate waste. A secondary container contains
spills or leaks from the primary container. Both containers must be
compatible with the waste material and meet federal, state, and local
requirements for container storage.
• Handle chemical wastes in a fume hood. After emptying a waste
container, seal it with the cap provided.
• Dispose of the contents of the waste tray and waste bottle in accordance
with good laboratory practices and local, state/provincial, or national
environmental and health regulations.
• Check regularly for chemical leaks or spills. If a leak or spill occurs, follow
the manufacturer’s cleanup procedures as recommended in the SDS.
• Comply with all local, state/provincial, or national laws and regulations
related to chemical storage, handling, and disposal.
Waste Disposal If potentially hazardous waste is generated when you operate the
instrument, you must:
• Characterize the waste generated by the particular applications,
reagents, and substrates used in your laboratory.
• Ensure the health and safety of all personnel in your laboratory.
• Ensure that the instrument waste is stored, transferred, transported, and
disposed of according to all local, state/provincial, and/or national
regulations.
IMPORTANT! Radioactive or biohazardous materials may require spe-
cial handling and disposal limitations may apply. Consult the SDS of
the chemical for disposal information.

Page 8
General Power
Requirements
Input power and grounding must be available prior to system installa-
tion. Sufficient AC power must be available for all equipment. A sepa-
rate earth safety ground connection is also required for the whole
system.
Please note that an electrical conduit is not an acceptable separate
earth ground path. However, water pipes or other known good earth
ground paths may sometimes be used. Consult your local code and
regulations to determine if water pipes or other earth ground paths are
acceptable forms of grounding.
Locate the fuse or circuit-breaker-protected AC outlets and safety
ground connections as close to the system as possible (in order to
keep cable runs as short as possible).
System Input
Power
Requirements
WARNING! ELECTRICAL HAZARD. Grounding circuit continuity is
vital for the safe operation of equipment. Never operate equipment
with the grounding conductor disconnected. Wiring must conform to
country and local electrical codes.
DANGER! ELECTRICAL SHOCK HAZARD.Severe electrical shock
can result from operating the instrument without the instrument panels
in place. Do not remove the instrument panels. High-voltage contacts
are exposed when instrument panels are removed from the instru-
ment.
DANGER! ELECTRICAL HAZARD. Use properly configured and
approved line cords for the voltage supply in your facility.
DANGER! ELECTRICAL HAZARD. Plug the system into a properly
grounded receptacle with adequate current capacity.
Overvoltage
Rating
The Sequel System has an installation (overvoltage) category of III
(three) and is classified as nonportable equipment.
Electrical
Connections
The Sequel System must be plugged into a grounded circuit capable of
delivering at most 30 Amps for a 200-240V power source.
The maximum power consumption is 3000 Watts.
DANGER!
ELECTRICAL SHOCK AND LASER HAZARD Installation, mainte-
nance and repair are only allowed for authorized service personnel. Do
not remove the panels of the Sequel System.
For more information, see the Pacific Biosciences Sequel System Site
Preparation Guide.

Page 9
Laser
Classifications
The Sequel System is a Class 1 Laser Product that contains two Class
4
lasers.
Class 4 lasers present an eye hazard from direct and diffuse
reflec-
tions. Avoid eye or skin exposure to direct or reflected Class 4
laser
radiation. Class 4 lasers can cause combustion of flammable
materials
and produce serious skin burns and injury from direct
exposure.
Do not operate the instrument with any of the panels removed. When
the front door of the instrument is open, the laser beam is blocked via
safety interlock switches. If you operate the instrument with any panels
removed, you risk exposure to direct or reflected laser light.
Indicates the presence of a laser inside the instrument. Proceed with appro-
priate caution.
Laser Safety
Requirements
To ensure safe laser operation:
• The system must be installed and maintained by a Pacific Biosciences
representative.
• All instrument panels must be in place on the instrument while the
instrument is operating. When all panels are installed, there is no
detectable radiation present and the instrument is Class 1. If any panel is
removed when the laser is operating (during service), you may be
exposed to laser emissions in excess of the Class 4 rating.
• Do not remove safety labels or panels.
DANGER!
ELECTRICAL SHOCK AND LASER HAZARD Installation, mainte-
nance and repair are only allowed for authorized service personnel. Do
not remove the panels of the Sequel System.
WARNING! LASER HAZARD. Lasers can burn the retina, causing
permanent blind spots. Never look directly into the laser beam.
Remove jewelry and other items that can reflect the beam into your
eyes. Do not remove the instrument panels. Wear proper eye protec-
tion and post a laser warning sign at the entrance to the laboratory if
the panels are removed for service.
L ASER S AFETY

Page 10
Bar Code Scanner
Laser Safety
Requirements
The Sequel System comes with a bar code scanner. Bar code scan-
ners are categorized as Class 2 lasers.
Class 2 lasers are low-power, visible-light lasers that can damage the
eyes. Never look directly into the laser beam. The scanner is designed
to prevent human access to harmful levels of laser light during normal
operation, user maintenance, or during prescribed service operations.
WARNING! LASER HAZARD. Class 2 lasers can cause damage to
eyes. Avoid looking into a Class 2 laser beam or pointing a Class 2
laser beam into another person’s eyes.