Supero Supero SUPERSERVER 5017A-EP User manual

®
SUPERSERVER
5017A-EP
SUPER
USER’S MANUAL
1.0

The information in this User’s Manual has been carefully reviewed and is believed to be accurate.
The vendor assumes no responsibility for any inaccuracies that may be contained in this document,
makes no commitment to update or to keep current the information in this manual, or to notify any
person or organization of the updates. Please Note: For the most up-to-date version of this
manual, please see our web site at www.supermicro.com.
Super Micro Computer, Inc. ("Supermicro") reserves the right to make changes to the product
described in this manual at any time and without notice. This product, including software and docu-
mentation, is the property of Supermicro and/or its licensors, and is supplied only under a license.
Any use or reproduction of this product is not allowed, except as expressly permitted by the terms
of said license.
IN NO EVENT WILLSUPERMICRO BE LIABLE FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL,
SPECULATIVE OR CONSEQUENTIAL DAMAGES ARISING FROM THE USE OR INABILITY TO
USE THIS PRODUCT OR DOCUMENTATION, EVEN IF ADVISED OF THE POSSIBILITY OF
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HARDWARE, SOFTWARE, OR DATA.
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Clara County in the State of California, USA. The State of California, County of Santa Clara shall
be the exclusive venue for the resolution of any such disputes. Super Micro's total liability for all
claims will not exceed the price paid for the hardware product.
FCC Statement: This equipment has been tested and found to comply with the limits for a Class A
digital device pursuant to Part 15 of the FCC Rules. These limits are designed to provide reasonable
protection against harmful interference when the equipment is operated in a commercial environ-
ment. This equipment generates, uses, and can radiate radio frequency energy and, if not installed
and used in accordance with the manufacturer’s instruction manual, may cause harmful interference
with radio communications. Operation of this equipment in a residential area is likely to cause harmful
interference, in which case you will be required to correct the interference at your own expense.
California Best Management Practices Regulations for Perchlorate Materials: This Perchlorate warn-
ing applies only to products containing CR (Manganese Dioxide) Lithium coin cells. “Perchlorate
Material-special handling may apply. See www.dtsc.ca.gov/hazardouswaste/perchlorate”
WARNING: Handling of lead solder materials used in this
product may expose you to lead, a chemical known to the
State of California to cause birth defects and other repro-
ductive harm.
Manual Revision 1.0
Release Date: April 1, 2013
Unless you request and receive written permission from Super Micro Computer, Inc., you may not
copy any part of this document.
Information in this document is subject to change without notice. Other products and companies
referred to herein are trademarks or registered trademarks of their respective companies or mark
holders.
Copyright © 2013 by Super Micro Computer, Inc.
All rights reserved.
Printed in the United States of America

iii
Preface
Preface
About This Manual
This manual is written for professional system integrators and PC technicians. It
provides information for the installation and use of the SuperServer 5017A-EP.
Installation and maintainance should be performed by experienced technicians only.
The SuperServer 5017A-EP is a high-end server based on the SC504-203B rack-
mountable chassis and the X9SCAA single processor serverboard.
Manual Organization
Chapter 1: Introduction
The first chapter provides a checklist of the main components included with the
server system and describes the main features of the X9SCAA serverboard and
the SC504-203B chassis.
Chapter 2: Server Installation
This chapter describes the steps necessary to install the SuperServer 5017A-EP
into a rack and check out the server configuration prior to powering up the system.
If your server was ordered without processor and memory components, this chapter
will refer you to the appropriate sections of the manual for their installation.
Chapter 3: System Interface
Refer here for details on the system interface, which includes the functions and
information provided by the control panel on the chassis as well as other LEDs
located throughout the system.
Chapter 4: Standardized Warning Statements
You should thoroughly familiarize yourself with this chapter for a general overview
of safety precautions that should be followed when installing and servicing the
SuperServer 5017A-EP.

SUPERSERVER 5017A-EP User's Manual
iv
Chapter 5: Advanced Serverboard Setup
Chapter 5 provides detailed information on the X9SCAA serverboard, including the
locations and functions of connections, headers and jumpers. Refer to this chapter
when adding or removing processors or main memory and when reconfiguring the
serverboard.
Chapter 6: Advanced Chassis Setup
Refer to Chapter 6 for detailed information on the SC504-203B server chassis.
You should follow the procedures given in this chapter when installing, removing
or reconfiguring SAS/SATA or peripheral drives and when replacing system power
supply units and cooling fans.
Chapter 7: BIOS
The BIOS chapter includes an introduction to BIOS and provides detailed informa-
tion on running the CMOS Setup Utility.
Appendix A: BIOS Error Beep Codes
Appendix B: System Specifications

Notes
Preface
v

vi
Table of Contents
Chapter 1 Introduction
1-1 Overview .........................................................................................................1-1
1-2 Motherboard Features.....................................................................................1-2
Processors ......................................................................................................1-2
Memory ...........................................................................................................1-2
Serial ATA........................................................................................................1-2
PCI Expansion Slots....................................................................................... 1-2
Rear I/O Ports.................................................................................................1-2
1-3 Server Chassis Features ................................................................................1-3
System Power................................................................................................. 1-3
Hard Drive Subsystem.................................................................................... 1-3
Front Control Panel......................................................................................... 1-3
1-4 Contacting Supermicro....................................................................................1-5
Chapter 2 Server Installation
2-1 Overview .........................................................................................................2-1
2-2 Unpacking the System.................................................................................... 2-1
2-3 Preparing for Setup......................................................................................... 2-1
Choosing a Setup Location............................................................................. 2-1
2-4 Warnings and Precautions.............................................................................. 2-2
Rack Precautions............................................................................................ 2-2
Server Precautions..........................................................................................2-2
Rack Mounting Considerations.......................................................................2-3
Ambient Operating Temperature................................................................2-3
Reduced Airflow .........................................................................................2-3
Mechanical Loading ................................................................................... 2-3
Circuit Overloading..................................................................................... 2-3
Reliable Ground ......................................................................................... 2-3
2-5 Installing the System into a Rack ...................................................................2-4
Installing the Chassis into a Standard Rack...................................................2-4
Telco Rack.......................................................................................................2-5
Installing the Chassis into a Telco Rack.........................................................2-5
Chapter 3 System Interface
3-1 Overview .........................................................................................................3-1
3-2 Control Panel Buttons..................................................................................... 3-1
Reset...............................................................................................................3-1
Power..............................................................................................................3-1
SUPERSERVER 5017A-EP User's Manual

vii
3-3 Control Panel LEDs ........................................................................................3-2
Power Fail.......................................................................................................3-2
NIC1................................................................................................................3-2
NIC2................................................................................................................3-2
HDD................................................................................................................. 3-3
Power..............................................................................................................3-3
Chapter 4 Standardized Warning Statements for AC Systems
4-1 About Standardized Warning Statements.......................................................4-1
Warning Definition........................................................................................... 4-1
Installation Instructions.................................................................................... 4-4
Circuit Breaker ................................................................................................ 4-5
Power Disconnection Warning........................................................................ 4-6
Equipment Installation..................................................................................... 4-8
Restricted Area................................................................................................ 4-9
Battery Handling............................................................................................ 4-10
Redundant Power Supplies .......................................................................... 4-12
Backplane Voltage ........................................................................................ 4-13
Comply with Local and National Electrical Codes........................................4-14
Product Disposal........................................................................................... 4-15
Hot Swap Fan Warning................................................................................. 4-16
Power Cable and AC Adapter ...................................................................... 4-18
Chapter 5 Advanced Motherboard Setup
5-1 Handling the Motherboard .............................................................................. 5-1
Precautions .....................................................................................................5-1
Unpacking .......................................................................................................5-1
5-2 Connecting Cables.......................................................................................... 5-2
Connecting Data Cables................................................................................. 5-2
Connecting Power Cables .............................................................................. 5-2
Connecting the Control Panel.........................................................................5-2
5-3 Rear I/O Ports.................................................................................................5-3
5-4 Onboard Processor and Heatsink................................................................... 5-4
5-5 Installing Memory............................................................................................ 5-4
How to Install SO DIMMs ............................................................................... 5-4
Memory Support..............................................................................................5-4
5-6 Adding PCI Add-On Cards..............................................................................5-5
5-7 Motherboard Details........................................................................................ 5-6
X9SCAA Quick Reference .............................................................................. 5-7
5-8 Connector Definitions .....................................................................................5-8
Table of Contents

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SUPERSERVER 5017A-EP User's Manual
5-9 Jumper Settings............................................................................................ 5-15
5-10 Onboard Indicators........................................................................................5-17
5-11 SATA and SAS Ports.....................................................................................5-18
5-12 Installing Software......................................................................................... 5-19
SuperDoctor III..............................................................................................5-20
5-13 Onboard Battery............................................................................................ 5-22
Chapter 6 Advanced Chassis Setup
6-1 Static-Sensitive Devices..................................................................................6-1
Precautions .....................................................................................................6-1
Unpacking .......................................................................................................6-1
6-2 Control Panel .................................................................................................. 6-2
6-3 Removing the Chassis Cover .........................................................................6-3
6-4 System Fans (Optional)..................................................................................6-4
6-5 Installing Hard Drives...................................................................................... 6-4
Hard Drive Configuration Options...................................................................6-6
6-6 Installing an Expansion Card.......................................................................... 6-7
6-7 Power Supply..................................................................................................6-9
Replacing the Power Supply........................................................................... 6-9
Chapter 7 BIOS
7-1 Introduction...................................................................................................... 7-1
Starting BIOS Setup Utility..............................................................................7-1
How To Change the Configuration Data......................................................... 7-1
How to Start the Setup Utility ......................................................................... 7-2
7-2 Main Setup...................................................................................................... 7-2
7-3 Advanced Setup Configurations......................................................................7-4
7-4 Boot................................................................................................................7-17
7-5 Security Settings........................................................................................... 7-18
7-6 Save & Exit ................................................................................................... 7-19
Appendix A POST Error Beep Codes
Appendix B System Specifications

Chapter 1
Introduction
1-1 Overview
The SuperServer 5017A-EP is a mini server comprised of two main subsystems: the
SC504-203B 1U chassis and the X9SCAA single processor motherboard. Please
refer to our web site for information on operating systems that have been certified
for use with the system (www.supermicro.com).
In addition to the motherboard and chassis, various hardware components have
been included with the 5017A-EP, as listed below:
• One riser card bracket (MCP-120-00063-0N)
• One riser card (CSE-RR32-1U)
• One special I/O bracket (MCP-260-00054-0B)
• SuperServer 5017A-EP Quick Reference Guide
Note: a complete list of safety warnings is provided on the Supermicro web site at
http://www.supermicro.com/about/policies/safety_information.cfm
Chapter 1: Introduction
1-1

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SUPERSERVER 5017A-EP User's Manual
1-2 Motherboard Features
The SuperServer 5017A-EP is built around the X9SCAA, a single processor mother-
board based on the Intel NM10 Express chipset and designed to provide maximum
performance. Below are the main features of the X9SCAA. (See Figure 1-1 for a
block diagram of the chipset).
Processors
The X9SCAA supports a single Intel® ATOM N2800 Series Processor. Please refer
to the motherboard description pages on our web site for a complete listing of sup-
ported processors (www.supermicro.com).
Memory
The X9SCAA has two SO-DIMM slots that can support up to 4 GB of Non-ECC
DDR3-1066 memory. See Chapter 5 for details.
Serial ATA
A SATA controller is also integrated into the chipset to provide two SATA 2.0 (3/
Gbps) ports.
PCI Expansion Slots
The X9SCAA has one PCI x32 slot and one Mini-PCI-E slot.
Rear I/O Ports
The color-coded I/O ports include two USB 2.0 ports, two USB 3.0 ports, two LAN
ports, an HDMI port, a VGA port and a VESA display port.

1-3
Chapter 1: Introduction
1-3 Server Chassis Features
The SC504-203B is an mini-ATX form factor chassis designed to be used in a 1U
rackmount configuration. The following is a general outline of the main features of
the SC504-203B server chassis.
System Power
The SC504-203B features a single 200W power supply. Power must be removed
from the system and the AC power cord removed when replacing. See Chapter 6
for details.
Hard Drive Subsystem
Either two 3.5" internal drive or two 2.5" internal drives (with a 2.5" HDD bracket)
are supported by the system. These are not hot-swap drives.
Front Control Panel
The control panel on the SC504-203B provides you with system monitoring and
control. LEDs indicate system power, HDD activity, network activity, system infor-
mation and power supply failure. A main power button and a system reset button
are also included.

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SUPERSERVER 5017A-EP User's Manual
Figure 1-1. Intel NM10 Express Chipset:
System Block Diagram
Note: This is a general block diagram. Please see Chapter 5 for details.
LPC
Stacked 2 port rear I/O
COM1 (internal header)
ITE-8760E
GLAN2
82574L
2.5GT/s
Intel ATOM
DDR3 1066 MHz
X9SCAA(-L) BLOCK DIAGRAM
DDI0
HDMI connector
RJ45
RJ45
Non-ECC-SODIMM1
Intel NM10
DMI (X4-Gen1)
2x SATA PORTS
USB2.0
SATA 3Gb/s
PCIe Gen1x1
2.5GT/s
GLAN1
82574L
Debug Header/
USB2.0
4x USB2.0 by Header
SATA[1:0]
USB[3:0]
USB[7:6]
LPC
SPI
TPM HEADER
PCIE[1]
PCIE[2]
PCIE[3]
PCIE[4]
SPI
FLASH
SPI 64Mb
N2800
Non-ECC-SODIMM2 (DEFAULT)
(N2800 only X2)
Single Channel
DDI1
DP connector
LVDS
LVDS connector
VGA
VGA connector
USB2.0
MINI-PCIE
USB[5:4]
COM2 (internal header)
COM3 (internal header)
COM4 (internal header)
PCIe Gen1x1
PCIe Gen1x1 RENESAS
UPD720202
2.5GT/s
PCIe Gen1x1
2.5GT/s
MINI PCIE
SLOT
USB 3.0
Rear I/O
PCI 33 PCI SLOT
PCI
2 Cores/4 Threads
1.86G/ 1M L2 Cache
SIO-W83527HG
(Support RS485/RS422)
MAX. 4G SO-DIMM SUPPORTED
ONLY FOR X9SCAA
ONLY FOR X9SCAA
ONLY FOR X9SCAA
ONLY FOR X9SCAA

1-5
Chapter 1: Introduction
1-4 Contacting Supermicro
Headquarters
Address: Super Micro Computer, Inc.
980 Rock Ave.
San Jose, CA 95131 U.S.A.
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
Web Site: www.supermicro.com
Europe
Address: Super Micro Computer B.V.
Het Sterrenbeeld 28, 5215 ML
's-Hertogenbosch, The Netherlands
Tel: [phone]
Fax: [phone]
Email: [email protected] (General Information)
[email protected] (Technical Support)
[email protected] (Customer Support)
Asia-Pacific
Address: Super Micro Computer, Inc.
4F, No. 232-1, Liancheng Rd.
Chung-Ho Dist., New Taipei City 235
Taiwan
Tel: [phone]
Fax: [phone]
Web Site: www.supermicro.com.tw
Technical Support:
Email: [email protected]
Tel: [phone], ext.132 or 139

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SUPERSERVER 5017A-EP User's Manual
Notes

Chapter 2: Server Installation
2-1
Chapter 2
Server Installation
2-1 Overview
This chapter provides a quick setup checklist to get your SuperServer 5017A-EP
up and running. Following these steps in the order given should enable you to have
the system operational within a minimum amount of time. This quick setup assumes
that your system has come to you with the processors and memory preinstalled. If
your system is not already fully integrated with a serverboard, processors, system
memory etc., please turn to the chapter or section noted in each step for details on
installing specific components.
2-2 Unpacking the System
You should inspect the box the SuperServer 5017A-EP was shipped in and note
if it was damaged in any way. If the server itself shows damage you should file a
damage claim with the carrier who delivered it.
Decide on a suitable location for the rack unit that will hold the SuperServer 5017A-
EP. It should be situated in a clean, dust-free area that is well ventilated. Avoid
areas where heat, electrical noise and electromagnetic fields are generated. You
will also need it placed near a grounded power outlet. Read the Rack and Server
Precautions in the next section.
2-3 Preparing for Setup
Follow the steps in the order given to complete the installation process in a mini-
mum amount of time. Please read this section in its entirety before you begin the
installation procedure outlined in the sections that follow.
Choosing a Setup Location
• Leave enough clearance in front of the rack to enable you to open the front door
completely (~25 inches) and approximately 30 inches of clearance in the back
of the rack to allow for sufficient airflow and ease in servicing.
• This product is for installation only in a Restricted Access Location (dedicated
equipment rooms, service closets and the like).

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SUPERSERVER 5017A-EP User's Manual
• This product is not suitable for use with visual display work place devices
acccording to §2 of the the German Ordinance for Work with Visual Display Units.
2-4 Warnings and Precautions
Rack Precautions
• Ensure that the leveling jacks on the bottom of the rack are fully extended to
the floor with the full weight of the rack resting on them.
• In single rack installation, stabilizers should be attached to the rack. In multiple
rack installations, the racks should be coupled together.
• Always make sure the rack is stable before extending a component from the
rack.
• You should extend only one component at a time - extending two or more si-
multaneously may cause the rack to become unstable.
Server Precautions
• Review the electrical and general safety precautions in Chapter 4.
• Determine the placement of each component in the rack before you install the
rails.
• Install the heaviest server components on the bottom of the rack first, and then
work up.
• Use a regulating uninterruptible power supply (UPS) to protect the server from
power surges, voltage spikes and to keep your system operating in case of a
power failure.
• Allow any hot plug drives and power supply modules to cool before touching
them.
• Always keep the rack's front door and all panels and components on the servers
closed when not servicing to maintain proper cooling.

Chapter 2: Server Installation
2-3
Rack Mounting Considerations
Ambient Operating Temperature
If installed in a closed or multi-unit rack assembly, the ambient operating tempera-
ture of the rack environment may be greater than the ambient temperature of the
room. Therefore, consideration should be given to installing the equipment in an
environment compatible with the manufacturer’s maximum rated ambient tempera-
ture (Tmra).
Reduced Airflow
Equipment should be mounted into a rack so that the amount of airflow required
for safe operation is not compromised.
Mechanical Loading
Equipment should be mounted into a rack so that a hazardous condition does not
arise due to uneven mechanical loading.
Circuit Overloading
Consideration should be given to the connection of the equipment to the power
supply circuitry and the effect that any possible overloading of circuits might have
on overcurrent protection and power supply wiring. Appropriate consideration of
equipment nameplate ratings should be used when addressing this concern.
Reliable Ground
A reliable ground must be maintained at all times. To ensure this, the rack itself
should be grounded. Particular attention should be given to power supply connec-
tions other than the direct connections to the branch circuit (i.e. the use of power
strips, etc.).
Warning! To prevent bodily injury when mounting or servicing this unit in a
rack, you must take special precautions to ensure that the system remains
stable. The following guidelines are provided to ensure your safety:
• This unit should be mounted at the bottom of the rack if it is the only unit in
the rack.
• When mounting this unit in a partially filled rack, load the rack from the bottom
to the top with the heaviest component at the bottom of the rack.
• If the rack is provided with stabilizing devices, install the stabilizers before
mounting or servicing the unit in the rack.

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SUPERSERVER 5017A-EP User's Manual
2-5 Installing the System into a Rack
This section provides information on installing the SC504 chassis into a rack unit.
There are a variety of rack units on the market, which may mean the assembly
procedure will differ slightly. You should also refer to the installation instructions that
came with the rack unit you are using.
Stability Hazard. The rack stabilizing mechanism must be in place, or the
rack must be bolted to the floor before you slide the unit out for servicing.
Failure to stabilize the rack can cause the rack to tip over.
Installing the Chassis into a Standard Rack
1. Confirm that chassis includes the four mounting screws required to mount the
chassis into a rack
2. Align the thru holes of the chassis with the thru holes of the rack.
3. Insert the mounting screws into the thru holes in the front of the chassis and
through the thru holes in the rack and secure.
Figure 2-1. Installing the Chassis into a Rack

Chapter 2: Server Installation
2-5
Figure 2-2. Installing the Chassis into a Telco Rack
Telco Rack
The SC504 supports Telco Rack installation. The SC504 chassis' compact design
allows the it to be installed into a Telco rack without the use of rails.
Installing the Chassis into a Telco Rack
1. To install the chassis into a Telco style two-post rack, use two L-shaped
brackets on either side of the chassis (four total).
2. First, determine how far follow the server will extend out the front of the rack.
Larger chassis should be positioned to balance the weight between front and
back.
3. If a bezel is included on your chassis, remove it. Then attach the two front
brackets to each side of the chassis, then the two rear brackets positioned
with just enough space to accommodate the width of the Telco rack.
4. Finish by sliding the chassis into the rack and tightening the brackets to the
rack.
Note: the figures are for illustrative purposes only. Always install chassis starting
from the bottom of the rack and working up.

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SUPERSERVER 5017A-EP User's Manual
Notes