TYAN S5560 User manual

S5560
Version 1.0
Copyright
Copyright © 2021 MiTAC International Corporation. All rights reserved. No part of
this manual may be reproduced or translated without prior written consent from
MiTAC International Corporation.
Trademark
All registered and unregistered trademarks and company names contained in this
manual are property of their respective owners including, but not limited to the
following.
TYAN®is a trademark of MiTAC International Corporation.
Intel®is a trademark of Intel®Corporation.
AMI, AMI BIOS are trademarks of AMI Technologies.
Microsoft®, Windows®are trademarks of Microsoft Corporation.
Winbond®is a trademark of Winbond Electronics Corporation.
Notice
Information contained in this document is furnished by MiTAC International
Corporation and has been reviewed for accuracy and reliability prior to printing.
MiTAC assumes no liability whatsoever, and disclaims any express or implied
warranty, relating to sale and/or use of TYAN®products including liability or
warranties relating to fitness for a particular purpose or merchantability. MiTAC
retains the right to make changes to product descriptions and/or specifications at
any time, without notice. In no event will MiTAC be held liable for any direct or
indirect, incidental or consequential damage, loss of use, loss of data or other
malady resulting from errors or inaccuracies of information contained in this
document.

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Contents
S5560............................................................................................................1
Before you begin…....................................................................................3
Chapter 1: Instruction ................................................................................4
1.1 Congratulations .................................................................................4
1.2 Hardware Specifications....................................................................4
Chapter 2: Board Installation...................................................................10
2.1 Board Image....................................................................................11
2.2 Block Diagram.................................................................................13
2.3 Motherboard Mechanical Drawing...................................................14
2.4Board Parts, Jumpers and Connectors ...........................................15
2.5Installing the Processor and Heatsink.............................................23
2.6Tips on Installing Motherboard in Chassis ......................................27
2.7Installing the Memory ......................................................................29
2.8Attaching Drive Cables....................................................................32
2.9Installing Add-In Cards....................................................................33
2.10 Connecting External Devices ........................................................34
2.11 Installing the Power Supply...........................................................36
2.12 Finishing Up...................................................................................36
Chapter 3: BIOS Setup .............................................................................37
3.1 About the BIOS................................................................................37
3.2 Main Menu.......................................................................................39
3.3 Advanced Menu...............................................................................40
3.4 CPU Menu.......................................................................................88
3.5 Chipset Menu ..................................................................................94
3.6 Server Management......................................................................107
3.7Security..........................................................................................115
3.8 Boot ...............................................................................................120
3.9 Save & Exit....................................................................................123
Chapter 4: Diagnostics...........................................................................125
4.1 Flash Utility....................................................................................125
4.2 AMIBIOS Post Code (Aptio)..........................................................126
Glossary...................................................................................................143
Technical Support ..................................................................................149

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Before you begin…
Check the box contents!
The retail motherboard package should contain the following:
1 x S5560 Motherboard
1 x Rear IO shielding
1 x S5560 Quick Installation Guide
2 x SATA Single Cable
1 x M.2 Latch
IMPORTANT NOTE:
Sales sample may not come with the accessory listed above.
Please contact your sales representative to help order accessory for your
evaluation.

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Chapter 1: Instruction
1.1 Congratulations
You have purchased the powerful TYAN®S5560 motherboard, based on the Intel®
C256 chipset. The S5560 is designed to support single Intel® Xeon E-2300 11th Gen
series processor, and up to 128GB Unbuffered ECC DDR4 3200 memory.
Leveraging advanced technology from Intel®, the S5560 is capable of offering
scalable 32 and 64-bit computing, high-bandwidth memory design, and lightning-fast
PCI-E bus implementation.
The S5560 not only empowers you in today’s demanding IT environment but also
offers a smooth path for future application upgradeability. All of these rich feature sets
provide the S5560 with the power and flexibility to meet demanding requirements for
today’s IT environments.
Remember to visit the TYAN® website at http://www.tyan.com. There you can find all
the information on all TYAN®products as well as all the supporting documentation,
FAQs, Drivers and BIOS upgrades.
1.2 Hardware Specifications
S5560GM2NRE-2T Specifications
Processor
Q'ty / Socket Type
(1) LGA1200
Supported CPU
Series
Intel Xeon E-2300 11th Gen. series processor
/ Intel Pentium series processor
Thermal Design
Power (TDP)
Wattage
Max up to 95W
Chipset
PCH
Intel C252
Memory
Supported DIMM
Qty
(4) DIMM slots
DIMM Type /
Speed
DDR4 Unbuffered ECC UDIMM 3200
Capacity
Up to 128GB / *Follow latest Intel DDR4
Memory POR
Memory channel
2 Channels per CPU
Memory voltage
1.2V

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Expansion
Slots
PCIe
(1) PCIe Gen.4 x16 slot #3 (w/ x8 link) from
CPU / (1) PCIe Gen.4 x8 open-end slot #2 (w/
x8 link) from CPU / (1) PCIe Gen.3 x8 open-
end slot #1 (w/ x2 link) from PCH
LAN
Q'ty / Port
(2) 10GbE ports + (1) GbE dedicated for IPMI
Controller
Intel X550
PHY
Realtek RTL8211FD-CG
Storage SATA
Connector
(2) SATA-DOM /
(1) Slim SAS, SFF-8654 Connector
(1) Mini-SAS HD for (4) SATA ports
Controller
Intel C252
Speed
6Gb/s
RAID
RAID 0/1/10/5 (Intel RSTe)
Storage NVMe
Connector (M.2)
(1) 22110/2280 (by PCIe Gen.3 interface)
Graphic VGA
Connector type
(1) VGA
Resolution
Up to 1920x1200 @60Hz
Chipset
Aspeed AST2600
Graphic
Display Port
Connector type
(1) Display port 1.2
Resolution
Up to 4096X2304 @60Hz
Chipset
Intel Processor Graphics (pGFX)
Input /Output
USB
(1) USB2.0 port /
(1) USB3.2 Gen.2 port (Type-C) /
(2) USB3.2 Gen.2 ports
(1) USB3.2 Gen.1 Header
COM
(2) DB-9 COM Connector headers
VGA
(1) D-Sub 15-pin VGA port (@ rear)
RJ-45
(2) 10GbE ports +
(1) GbE dedicated for IPMI
Display port
(1) Display port 1.2
TPM
(Optional)
TPM Support
Please refer to our TPM supported list.
System
Monitoring
Chipset
Aspeed AST2600
Fan
Total (6) 4-pin headers
Temperature
Monitors temperature for CPU & memory

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Voltage
Monitors voltage for CPU, memory, chipset &
power supply
Others
Watchdog timer support
Server
Management
Onboard Chipset
Onboard Aspeed AST2600
AST2600 iKVM
Feature
24-bit high quality video compression /
Supports storage over IP and remote
platform-flash / USB 2.0 virtual hub
AST2600 IPMI
Feature
IPMI 2.0 compliant baseboard management
controller (BMC) / 10/100/1000 Mb/s MAC
interface
BIOS
Brand / ROM size
AMI / 32MB
Feature
Hardware Monitor / PXE boot support /
Console Redirection / User Configurable FAN
PWM Duty Cycle / SMBIOS 3.3/PnP/Wake on
LAN / ACPI 6.2 / ACPI sleeping states S0,S5
Physical
Dimension
Form Factor
Micro ATX
Board Dimension
9.6" x 9.6" (243.8 x 243.8mm)
Regulation
FCC (SDoC)
Class B
CE (DoC)
Class B
RCM
Class B
VCCI
Class B
Operating
Environment
Operating Temp.
10°C ~ 35°C (50°F~ 95°F)
Non-operating
Temp.
- 40°C ~ 70°C (-40°F ~ 158°F)
In/Non-operating
Humidity
90%, non-condensing at 35°C
RoHS
RoHS 6/6
Compliant
Yes
Operating
System
OS supported list
Please refer to our AVL support lists.
Package
Contains
Motherboard
(1) S5560 Motherboard
Manual
(1) Quick Installation Guide
I/O Shield
(1) I/O Shield
Cable SATA
(2) SATA signal cables

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S5560GM2NRE-2T-HE Specifications
Processor
Q'ty / Socket Type
(1) LGA1200
Supported CPU Series
Intel Xeon E-2300 11th Gen. series
processor / Intel Pentium series processor
Thermal Design Power
(TDP) Wattage
Max up to 95W
Chipset
PCH
Intel C256
Memory
Supported DIMM Qty
(4) DIMM slots
DIMM Type / Speed
DDR4 Unbuffered ECC UDIMM 3200
Capacity
Up to 128GB / *Follow latest Intel DDR4
Memory POR
Memory channel
2 Channels per CPU
Memory voltage
1.2V
Expansion
Slots
PCIe
(1) PCIe Gen.4 x16 slot #3 (w/ x8 link)
from CPU / (1) PCIe Gen.4 x8 open-end
slot #2 (w/ x8 link) from CPU / (1) PCIe
Gen.3 x8 open-end slot #1 (w/ x2 link)
from PCH
LAN
Q'ty / Port
(2) 10GbE ports +
(1) GbE dedicated for IPMI
Controller
Intel X550
PHY
Realtek RTL8211FD-CG
Storage SATA
Connector
(2) SATA-DOM / (2) SATA / (1) Mini-SAS
HD for (4) SATA ports
Controller
Intel C256
Speed
6Gb/s
RAID
RAID 0/1/10/5 (Intel RSTe)
Storage NVMe
Connector (M.2)
(2) 22110/2280 (by PCIe Gen.3 interface)
Graphic VGA
Connector type
(1) VGA
Resolution
Up to 1920x1200 @60Hz
Chipset
Aspeed AST2600
Graphic
Display Port
Connector type
(1) Display port 1.2
Resolution
Up to 4096X2304 @60Hz
Chipset
Intel Processor Graphics (pGFX)

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Input /Output
USB
(1) USB2.0 port /
(1) USB3.2 Gen.2 port (Type-C) /
(2) USB3.2 Gen.2 ports /
(1) USB3.2 Gen.1 Header
COM
(2) DB-9 COM Connector headers
VGA
(1) D-Sub 15-pin VGA port (@ rear)
RJ-45
(2) 10GbE ports +
(1) GbE dedicated for IPMI
Display port
(1) Display port 1.2
TPM
(Optional)
TPM Support
Please refer to our TPM supported list.
System
Monitoring
Chipset
Aspeed AST2600
Fan
Total (6) 4-pin headers
Temperature
Monitors temperature for CPU & memory
Voltage
Monitors voltage for CPU, memory,
chipset & power supply
Others
Watchdog timer support
Server
Management
Onboard Chipset
Onboard Aspeed AST2600
AST2600 iKVM
Feature
24-bit high quality video compression /
Supports storage over IP and remote
platform-flash / USB 2.0 virtual hub
AST2600 IPMI Feature
IPMI 2.0 compliant baseboard
management controller (BMC) /
10/100/1000 Mb/s MAC interface
BIOS
Brand / ROM size
AMI / 32MB
Feature
Hardware Monitor / PXE boot support /
Console Redirection / User Configurable
FAN PWM Duty Cycle / SMBIOS 3.3/PnP
/Wake on LAN / ACPI 6.2 / ACPI sleeping
states S0,S5
Physical
Dimension
Form Factor
Micro ATX
Board Dimension
9.6" x 9.6" (243.8 x 243.8mm)
Regulation
FCC (SDoC)
Class B
CE (DoC)
Class B
RCM
Class B

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VCCI
Class B
Operating
Environment
Operating Temp.
10°C ~ 35°C (50°F~ 95°F)
Non-operating Temp.
- 40°C ~ 70°C (-40°F ~ 158°F)
In/Non-operating
Humidity
90%, non-condensing at 35°C
RoHS
RoHS 6/6 Compliant
Yes
Operating
System
OS supported list
Please refer to our AVL support lists.
Package
Contains
Motherboard
(1) S5560 Motherboard
Manual
(1) Quick Installation Guide
I/O Shield
(1) I/O Shield
Cable SATA
(2) SATA signal cables

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Chapter 2: Board Installation
You are now ready to install your motherboard.
How to install our products right… the first time
The first thing you should do is read this user’s manual. It contains important
information that will make configuration and setup much easier. Here are some
precautions you should take when installing your motherboard:
(1) Ground yourself properly before removing your motherboard from the
antistatic bag. Unplug the power from your computer power supply and then
touch a safely grounded object to release static charge (i.e. power supply
case). For the safestconditions, MiTAC recommends wearing a staticsafety
wrist strap.
(2) Hold the motherboard by its edges and do not touch the bottom of the board,
or flex the board in any way.
(3) Avoid touching the motherboard components, IC chips, connectors, memory
modules, and leads.
(4) Place the motherboard on a grounded antistatic surface or on the antistatic
bag that the board was shipped in.
(5) Inspect the board for damage.
The following pages include details on how to install your motherboard into your
chassis, as well as installing the processor, memory, disk drives and cables.
Caution!
1. To avoid damaging the motherboard and associated
components, do not use torque force greater than
7kgf/cm (6.09 lb/in) on each mounting screw for
motherboard installation.
2. Do not apply power to the board if it has been
damaged.

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2.1 Board Image
S5560GM2NRE-2T-HE

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S5560GM2NRE-2T
This picture is representative of the latest board revision available at the time of
publishing. The board you receive may not look exactly like the above picture.

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2.2 Block Diagram
S5560 Block Diagram

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2.3 Motherboard Mechanical Drawing

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2.4 Board Parts, Jumpers and Connectors
This diagram is representative of the latest board revision available at the time of
publishing. The board you receive may not look exactly like the above diagram. The
DIMM slot numbers shown above can be used as a reference when reviewing the
DIMM population guidelines shown later in the manual. For the latest board
revision, please visit our web site at http://www.tyan.com.

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Motherboard Components
Connectors/Jumpers
1.ID Button(SW3)
20. Front Panel Header (J25)
2.USB3.2 Gen2 Port x2, IPMI_LAN
(J17)
21. SATA7 (J9)
3.Display Port 1(J62) VGA Port (VGA1)
22. SATA6 (J6)
4.SMBUS_VR(PJ1)
23. SATA5/SATADOM2(J8)
5.LAN1,LAN2(J11)
24. SATA4/SATADOM1(J7)
6.USB2.0(J15)
25. SPI TPM (J28)
7.USB3.2 Gen2 TYPE C (J2)
26. TYAN Debug Card Header (J66)
8.BMC (U37)
27. SFF-8654(38 Circuit)
Connector(CN3)
9.COM1 (J59)
28. Mini SAS HD SATA [0:3] (J5)
10.COM2 (J64)
29. Reset Button (SW1)
11. BMC Debug (J63)
30. SYS_FAN_4 (J20)
12. System Fan Header (J52)
31. Power Button (SW2)
13. SATA SGPIO (J10)
32. SYS_FAN_3 (J56)
14. IPMB Header (J24)
33. SYS_FAN_2 (J55)
15. M.2 Connector(CN1)_PCIE Only
34. SYS_FAN_1 (J54)
16. Front Panel USB3.2 Gen1(J18)
35. PWR1(J46)
17. M.2 Connector(CN2)_PCIE Only
36. SYS_FAN_5 (J58)
18. USB2.0 (J19)
37. PSMI (J45)
19. BIOS (U33)
38. PWR2(J47)
39. CPU_FAN (J53)
Jumper
a CMOS Clear Jumper(J37)
d PCIE Configuration CFG5 (J29)
b Intruder Header (J60)
e PCIE Configuration CFG6 (J30)
c Flash Security Override Jumper(J1)
Slots
A PCIE#1(J12)
C PCIE#3 (J14)
B PCIE#2(J13)
LEDs
i CATER_LED
iii ID_LED
ii PROCHOT_LED
iv BMC_LED

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J28: SPI TPM Connector
Signal
Pin
Pin
Signal
SPI Clock
1
2
PLTRST
SPI MOSI
3
4
SPI MISO
SPI Chip Select
5
6
NC
P3V3_AUX
7
8
Present Pin
IRQ_TPM_N
9
10
P3V3
GND
11
12
J53, J54, J55, J56, J57, J58: 4-pin FAN Connector
Pin
1
2
3
4
Signal
GND
P12V
TACHOMETER
PWM
Use this header to connect the cooling fan to your motherboard to keep
the system stable and reliable.
Note: A 4-pin fan is required for fan support 4pin Control
J52: System Fan Header
Signal
Pin
Pin
Signal
TACH1
1
2
TACH6
TACH2
3
4
TACH7
TACH3
5
6
TACH8
TACH4
7
8
TACH9
TACH5
9
10
TACH10
GND
11
12
KEY
PWM2
13
14
PWM1
TACH11
15
16
SMB_DATA
TACH12
17
18
SMB_CLK
P3V3_AUX
19
20
PWM3
J10: SSATA SGPIO Header
Signal
Pin
Pin
Signal
SCL
1
2
SD1/SDO1
SDA
3
4
SDO0
GND
5
6
SLOAD
NC
7
8
SCLOCK
V3AUX
9
10
HDD_FAULT

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J6, J9: SATA Connectors(SATA6/SATA7)
7
1
Name
TYPE
S1
GND
S2
TXP
S3
TXN
S4
GND
S5
RXN
S6
RXP
S7
GND
Connects to the Serial ATA ready drives via the Serial ATA cable.
J7, J8: SATA DOM Connectors (SATA4, SATA5)
Name
TYPE
1
GND
2
TXP
3
TXN
4
GND
5
RXN
6
RXP
7
GND
P1
P5V
P2
GND
Connects to the Serial ATA ready drives via the Serial ATA cable.
J24: IPMB Connector
Signal
Pin
Pin
Signal
IPMB_DAT
1
2
GND
IPMB_CLK
3
4
VCC3_AUX
J63: BMC Debug Header
Pin
1
2
3
Signal
UART_TXD
GND
UART_RXD
J59/J64: COM1/COM2 Header
Signal
Pin
Pin
Signal
DCD
1
2
DSR
RXD
3
4
RTS
TXD
5
6
CTS
DTR
7
8
NRI
GND
9
10
KEY

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J25: Front Panel Connector
Signal
Pin
Pin
Signal
PWRLED+
1
2
FP_PWR
KEY
3
4
IDLED+
PWRLED-
5
6
IDLED-
HDDLED+
7
8
FAULT_LED1-
HDDLED-
9
10
FAULT_LED2-
PWR_SW#
11
12
LAN1 ACTLED+
GND
13
14
LAN1 ACTLED-
RESET_SW#
15
16
SMBDATA
GND
17
18
SMBus SCL
SYS_ID_SW#
19
20
INTRUSION#
TEMP SENSOR
21
22
LAN2_ ACTLED+
NMI_SW#
23
24
LAN2_ ACTLED-
J5: 36-pin Vertical Mini-SAS HD Connector (SATA [0:3])
Signal
Pin
Pin
Signal
GND
A3
C3
GND
RXA0_DP
B4
D4
TXA0_DP
RXA0_DN
B5
D5
TXA0_DN
RXA1_DP
A6
C6
GND
RXA1_DN
A4
C4
TXA1_DP
GND
A5
C5
TXA1_DN
TP
A9
C9
GND
PD to GND
A1
A2
SGPIO CLOCK
SGPIO
B1
B2
SGPIO LOAD
DATAOUT
C1
C2
PD to GND
PU to P3V3
D1
D2
PD
CONTROLLER_TYPE
GND
B3
D3
GND
RXA2_DP
B7
D7
TXA2_DP
RXA2_DN
B8
D8
TXA2_DN
GND
B6
D6
GND
RXA3_DP
A7
C7
TXA3_DP
RXA3_DN
A8
C8
TXA3_DN
GND
B9
D9
GND
J45: PSMI Connector
Pin
Signal
1
PSMI_CLK
2
PSMI_DAT
3
PSMI_ALERT
4
GND
5
VCC

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J18: Front USB3.2 Gen1 Header
Signal
Pin
Pin
Signal
+5V
1
2
P0_RX_N
P0_RX_P
3
4
GND
P0_TX_N
5
6
P0_TX_P
GND
7
8
P0_N
P0_P
9
10
OC_N
P1_P
11
12
P1_N
GND
13
14
P1_TX_P
P1_TX_N
15
16
GND
P1_RX_P
17
18
P1_RX_N
+5V
19
20
NC
J19: USB2.0 Connector
Signal
Pin
Pin
Signal
P5V_AUX_TYPEA
1
3
USB2_PCH_P9_ESD_DP
USB2_PCH_P9_ESD_DN
2
4
GND
J66: TYAN Debug Card Header
Signal
Pin
Pin
Signal
P3V3_AUX
1
2
ESPI_CS0_N
ESPI_IO0
3
4
ESPI_IO1
5
6
RST_ESPI_RESET_N
ESPI_IO2
7
8
GND
ESPI_IO3
9
10
CLK_66M_24M_ESPI
IRQ_ESPI_ALERT0_N
11
12
GND
ID LED_BTN1: Rear IDLED Button
Signal
Pin
Pin
Signal
IDLED_SW#
1
2
GND
RST_BTN1: Reset Button
Pin
1
2
3
4
Signal
GND
GND
FP_RST_BTN_N
FP_RST_BTN_N
PWR_BTN1: Power Button
Pin
1
2
3
4
Signal
GND
GND
PWR_BTN1
PWR_BTN1