Fujitsu D2619 User manual

System Board D2619
for RX/TX300 S5
Technical Manual
Edition April 2009

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Copyright and Trademarks
Copyright © 2009 Fujitsu Technology Solutions GmbH.
All rights reserved.
Delivery subject to availability; right of technical modifications reserved.
All hardware and software names used are trademarks of their respective manufacturers.

D2619 (RX/TX300 S5) Technical Manual
Contents
1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
2 Important notes . . . . . . . . . . . . . . . . . . . . . . . . . . 7
2.1 Notes on safety . . . . . . . . . . . . . . . . . . . . . . . . . . 7
2.2 CE Certificate . . . . . . . . . . . . . . . . . . . . . . . . . . 10
2.3 Environmental Protection . . . . . . . . . . . . . . . . . . . 11
3 Features . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
3.1 Overview . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
3.2 Main memory . . . . . . . . . . . . . . . . . . . . . . . . . . 18
3.3 PCI bus . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 24
3.4 Screen resolution . . . . . . . . . . . . . . . . . . . . . . . 25
3.5 Temperature/system monitoring . . . . . . . . . . . . . . . 25
3.6 LEDs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 27
3.7 Interfaces and connectors . . . . . . . . . . . . . . . . . . . 29
3.7.1 External ports . . . . . . . . . . . . . . . . . . . . . . . . . . 31
3.8 Settings with switches and jumpers . . . . . . . . . . . . . 33
4 Replacing the lithium battery . . . . . . . . . . . . . . . . . 35

D2619 (RX/TX300 S5) Technical Manual 5
1 Introduction
This technical manual describes the system board D2619, which is equipped
with one Intel®processor.
Further information about drivers is provided in the readme files on the hard
disk, on the supplied “ServerStart“ or “Update“ CDs.
You will find further information in the BIOS description.
Notational conventions
The meanings of the symbols and fonts used in this manual are as follows:
italics indicates commands, menu items, file and path
names or software programs.
fixed font indicate system output on the monitor.
semi-bold fixed
font
indicates values to be entered through the keyboard.
[Key symbol] indicates keys according to their representation on the
keyboard.
If capital letters are to be entered explicitly, then the
Shift key is shown, e.g. [SHIFT] - [A] for A.
If two keys need to be pressed at the same time, then
this is shown by placing a hyphen between the two key
symbols.
“quotation marks” indicates names and terms that are being empha-
sized.
Êindicates an operation that to be performed.
VCAUTION! indicates warnings, which, if ignored, will endanger
your health, destroy the system or lead to the loss of
data.
Iindicates additional information, notes and tips.
Table 1: Notational conventions

D2619 (RX/TX300 S5) Technical Manual 7
2 Important notes
In this chapter you will find essential information regarding safety when working
with your server.
VCAUTION!
With the system board installed you must open the system to access the
system board. How to access the system board of your system is
described in the appropriate service supplement.
When handling the system board, refer to the specific notes on safety in
the operating manual and/or service supplement for the respective
server.
2.1 Notes on safety
VCAUTION!
●The actions described in these instructions should only be performed
by authorized, qualified personnel. Equipment repairs should only be
performed by qualified staff. Any failure to observe the guidelines in
this manual, and any unauthorized openings and improper repairs
could expose the user to risks (electric shock, fire hazards) and could
also damage the equipment. Please note that any unauthorized
openings of the device will result in the invalidation of the warranty
and exclusion from all liability.
●Transport the device only in the antistatic original packaging or in
packaging that protects it from knocks and jolts.
●Only install expansions that are allowed for the system board. If you
install other expansions, you may damage the requirements and rules
governing safety and electromagnetic compatibility or your system.
Information on which system expansions are suitable can be
obtained from the customer service centre or your sales outlet.
●The warranty expires if the device is damaged during the installation
or replacement of system expansions.

8 Technical Manual D2619 (RX/TX300 S5)
Notes on safety Important notes
V●Components can become very hot during operation. Ensure you do
not touch components when making extensions to the system board.
There is a danger of burns!
●Transmission lines to peripheral devices must be adequately
shielded.
●To the LAN wiring the requirements apply in accordance with the
standards EN 50173 and EN 50174-1/2. As minimum requirement
the use of a protected LAN line of category 5 for 10/100 MBit/s
Ethernet, and/or of category 5e for Gigabit Ethernet is considered.
The requirements of the specification ISO/IEC 11801 are to be
considered.
●Never connect or disconnect data transmission lines during a storm
(lightning hazard).
Batteries
VCAUTION!
●Incorrect replacement of lithium battery may lead to a risk of
explosion. The batteries may only be replaced with identical batteries
or with a type recommended by the manufacturer.
It is essential to observe the instructions in chapter “Replacing the
lithium battery”.

D2619 (RX/TX300 S5) Technical Manual 9
Important notes Notes on safety
Modules with electrostatic-sensitive components
Systems and components that might be damaged by electrostatic discharge
(ESD) are marked with the following label:
Figure 1: ESD label
When you handle components fitted with ESDs, you must observe the following
points under all circumstances:
●You must always discharge yourself of static charges (e.g. by touching a
grounded object) before working.
●The equipment and tools you use must be free of static charges.
●Remove the power plug from the power socket before inserting or removing
boards containing ESDs.
●Always hold boards with ESDs by their edges.
●Never touch pins or conductors on boards fitted with ESDs.
●Use a grounding cable designed for this purpose to connect yourself to the
system unit as you install/deinstall the board.
●Place all components on a static-safe base.
IYou will find a detailed description for handling ESD components in the
relevant European or international standards (EN 61340-5-1,
ANSI/ESD S20.20).

10 Technical Manual D2619 (RX/TX300 S5)
CE Certificate Important notes
Notes about boards
●During installation/deinstallation of the system board, observe the specific
instructions described in the service manual for the server.
●Remove the plug from the mains outlet so that system and system board are
totally disconnected from the mains voltage.
●To prevent damage to the system board, the components and conductors on
it, please take great care when you insert or remove boards. Take great care
to ensure that extension boards are slotted in straight, without damaging
components or conductors on the system board, or any other components,
for example EMI spring contacts.
●Be careful with the locking mechanisms (catches, centring pins etc.) when
you replace the system board or components on it, for example memory
modules or processors.
●Never use sharp objects (screwdrivers) for leverage.
2.2 CE Certificate
The board complies with the requirements of the EC directives
2004/108/EC regarding “Electromagnetic Compatibility” and
2006/95/EC “Low Voltage Directive”. This is indicated by the CE
marking (CE = Communauté Européenne).
Compliance was tested in a typical PRIMERGY configuration.

D2619 (RX/TX300 S5) Technical Manual 11
Important notes Environmental Protection
2.3 Environmental Protection
Environmentally friendly product design and development
This product has been designed in accordance with standards for ”environmen-
tally friendly product design and development“. This means that the designers
have taken into account important criteria such as durability, selection of
materials and coding, emissions, packaging, the ease with which the product
can be dismantled and the extent to which it can be recycled.
This saves resources and thus reduces the harm done to the environment.
Notes on saving energy
Devices that do not have to be on permanently should not be switched on until
they need to be used and should be switched off during long breaks and on
completion of work.
IThe ON/OFF switch does not separate the server from the line voltage.
For the complete separation from the line voltage you must pull the power
supply plugs.
Notes on packaging
Please do not throw away the packaging. We recommend that you do not throw
away the original packaging in case you need it later for transporting.
Notes on dealing with consumables
Please dispose batteries in accordance with local government regulations.
Do not throw batteries and accumulators into the household waste. They must
be disposed of in accordance with local regulations concerning special waste.
All batteries containing pollutants are marked with a symbol (a crossed-out
rubbish bin on wheels). In addition, the marking is provided with the chemical
symbol of the heavy metal decisive for the classification as a pollutant:
Cd Cadmium
Hg Mercury
Pb Lead

12 Technical Manual D2619 (RX/TX300 S5)
Environmental Protection Important notes
Notes on labeling plastic housing parts
Please avoid attaching your own labels to plastic housing parts wherever
possible, since this makes it difficult to recycle them.
Returning, recycling and disposal
For details on returning and reuse of devices and consumables within Europe,
refer to the “Returning used devices” manual, or contact your Fujitsu
Technology Solutions branch office/subsidiary or our recycling centre in
Paderborn:
Fujitsu Technology Solutions
Recycling Center
D-33106 Paderborn
Tel. [phone]
Fax [phone]
The device may not be disposed of with household rubbish. This
appliance is labelled in accordance with European Directive
2002/96/EC concerning used electrical and electronic appliances
(waste electrical and electronic equipment - WEEE).
The guideline determines the framework for the return and
recycling of used appliances as applicable throughout the EU. To
return your used device, please use the return and collection
systems available to you. You will find further information on this at
www.ts.fujitsu.com/recycling.

D2619 (RX/TX300 S5) Technical Manual 13
3 Features
3.1 Overview
Processors
– 1 or 2 Intel®Xeon™ processors of the 5500 serie
– 2 processor sockets LGA1366 for Intel®Xeon™ processors
– integrated memory controller
– 32 KB L1 cache (on-die, data per core)
– 32 KB L1 cache (on-die, instruction per core)
– 256 KB second level cache per core
– up to 8 MB onchip shared third level cache
– 2 Intel® QuickPath Interconnect with up to 6,4 GT/s in each direction
– 2x VRM 11.1 onboard (EVRD)
Main memory
– 2x 9 slots for main memory DDR3 800 / 1066 / 1333 single-, dual- or quad-
ranked RDIMM memory modules with 2 GB, 4 GB and 8 GB
– maximum 144 GB of memory
– minimum 2 GB (1 memory module)
– maximum 32 Gbit/s band width (DDR3)
– up to 3 dual or 2 quad memory rows per channel
– ECC multiple-bit error detection and single-bit error correction
– memory scrubbing functionality
– Single Device Data Correction (SDDC) function (Chipkill™)
–Mirroring
– Sparing
Chips on the system board
– Intel®5520 chipset
– Intel®ICH10 Base (Intel®82801JIB)
– Intel®dual-port Gigabit Ethernet controller Intel 82575EB
– TPM 1.2 Infineon SLB9635 TT1.2 card
– 2 MByte SPI flash (BIOS / iSCSI, PXE Bootcode)
– Server Management controller iRMC S2 with integrated graphic controller
– 16 MByte SPI flash (code) for iRMC S2
– 1 MByte SPI flash (data) for iRMC S2
– 32Mx16-667 DDR2 SRAM for iRMC S2

14 Technical Manual D2619 (RX/TX300 S5)
Overview Features
– SMSC8700 Fast Ethernet
– ADT7462 temperature/system monitoring controller
Graphic
– integrated VGA controller with PCIe x1 interface (Matrox G200)
– 8 MB graphic memory available via driver
– VESA compatible
LAN – Ethernet controller
– 1x Intel®82575EB dual-port 10/100/1000 MBit/s Base-T Ethernet controller
– PXE 2.0 and iSCSI boot support
– IPV6 header offloading
Storage devices
– 2x SATA2 (3 Gbit/s)
– 2x USB 2.0 (internal USB backup drives and USB FDD)
– 1x internal USB2.0 memory stick
External connectors
– 2x serial interfaces (COM)
– 4x USB 2.0 interfaces with 480 Mbit/s at the rear side
–1xVGA
– 2x RJ45 LAN
– 1x RJ45 service LAN
Internal connectors
–2xserialATA
– 1x operating panel
– 1x VGA port at the front side
– 1x universal USB port
– 1x USB port for 3 USB ports at the front side
– 2x USB ports for USB tape drives
– 1x intrusion detection (only in TX300 S5)
– 7x PCI Express slots
– 18x slots for DDR3 memory modules
– 1x HDD activity LED
– 1x power supply (12 V and 5 V auxiliary supply)
– 1x combined connector for HDD power supply and fan

D2619 (RX/TX300 S5) Technical Manual 15
Features Overview
– 2x power supply connectors
PCI slots
– 2x PCI Express 2.0 x8 slots
– 1x PCI Express 2.0 x4 slot
– 4x PCI Express 2.0 x4 slots, can be alternatively configured as 4 x4 slots or
2 x8 slots (if the neighbour slot isn’t equipped)
iRMC S2 Server Management controller
– basic functionalities: fan control, voltage supervision for onboard voltages,
temperature monitoring, System Event Log and ASR&R (Automatic Server
Reconfiguration and Restart)
–PDA
– Global Error/CSS/ID LED
– HD LED support (SAS, IDE, SATA, SCSI)
– Inventory Identification Control
– pre-failure warranty for memory
– CSS functionality
– power consumption control
– text console redirection
– Advanced Video Redirection - AVR
– remote storage
Security features
– system and BIOS password
– recovery BIOS support
– flash write protection against virus
Power management
– ACPI (states S0, S1, S5)
– 3.3 V standby power on the PCI Express slots
– on/off/sleep/wake by power button
– on/off by software
– wake on by RTC, external serial ports, LAN, PCI Express controller and
iRMC S2
– power on by power button, external serial ports, LAN, PCI Express controller
and iRMC S2

16 Technical Manual D2619 (RX/TX300 S5)
Overview Features
BIOS features
– Phoenix SecureCore
– SMBIOS 2.5 (DMI)
– MultiProcessor specification
– Server Hardware Design Guide
–WfM
– ACPI support
– LSI SAS/RAID BIOS
– USB keyboard/mouse
– boot possible from:
– hard disk (SATA, SAS, SCSI, USB)
–USBstick
– CD/DVD (SATA, SAS)
–LAN
– console redirection support
– OEM logo
– CPU, memory disable
– Mirroring and Spare memory support
Environmental protection
Battery in holder for recycling
Form factor, slot compatibility list
– 415 x 417mm
– ACPI 2.0, OnNow, PCI Express 2.0, LPC 1.1, WfM 2.0, SHDG 3.0, MPS 1.4,
IPMI 1.5, PCI SHPC 1.0 and PCI Express card electromechanical specifi-
cation rev. 1.0, USB2.0, SATAII 2.0
CSS (Customer Self Service)
This system board supports the CSS functionality. You will find a description of
CSS functionality in the operating manual of your server.
uSSD Solid State Disk (option)
By the manufacturer the system board is equipped with a slot for an uSSD Solid
State disk.
IThe slot for “USB stick internal“ and “uSSD Solid State Disk“ can not be
used at the same time. Only an internal USB stick or an uSSD is allowed.

D2619 (RX/TX300 S5) Technical Manual 17
Features Overview
USB stick internal
By the manufacturer the system board is equipped with a slot for an USB stick.
IThe slot for “USB stick internal“ and “uSSD Solid State Disk“ can not be
used at the same time. Only an internal USB stick or an uSSD is allowed.
TPM (option)
The system board can be equipped with a TPM (Trusted Platform Module) by
the manufacturer or by an add-on kit. This module enables programs from third
party manufacturers to store key information (e.g. drive encryption using
Windows Bitlocker Drive Encryption).
The TPM is activated via the BIOS system (for more information, refer to the
BIOS manual).
VCAUTION!
– When using the TPM, note the program descriptions provided by the
third party manufacturers.
– You must also create a backup of the TPM content. To do this, follow
the third party manufacturer's instructions. Without this backup, if the
TPM or the system board is faulty you will not be able to access your
data.
– If a failure occurs, please inform your service about the TPM
activation before it takes any action, and be prepared to provide them
with your backup copies of the TPM content.

18 Technical Manual D2619 (RX/TX300 S5)
Main memory Features
3.2 Main memory
The system board supports up to 144 GB main memory. 18 slots for main
memory are available. Each slot can be populated with 2 GB, 4 GB or 8 GB
single-, dual- oder quad-ranked RDIMM memory modules.The minimum
population in the independent channel mode is one DIMM.
ECC with memory scrubbing and with the Single Device Data Correction
(SDDC) function is supported.
IYou will find the descriptions how to install memory modules in the
Options Guide of your server.
Module population
Figure 2: Assembly of the main memory in channels and slots
The arrows in figure 2 show the direction of the population of the memory slots.
●The memory modules are organized in 6 channels (A - F). Each channel has
three slots (1-3).
●The channels A - C are controlled by CPU 1 and the channels D - F are
controlled by CPU 2.
●Only x4 organized registered DIMMs with ECC are supported.
CPU 2
Channel A Channel B Channel C
DIMM-1D
Channel D
Channel E
Channel F
CPU 1
DIMM 3A
DIMM 3D
DIMM 1C DIMM 2C DIMM 3C DIMM 1B DIMM 2B DIMM 3B DIMM 1A DIMM 2A
DIMM 1F DIMM 2F DIMM 3F DIMM 1E DIMM 2E DIMM 3E DIMM 1D DIMM 2D

D2619 (RX/TX300 S5) Technical Manual 19
Features Main memory
There are three operational modes for the main memory:
– Independent channel mode (maxium population)
The populated memory of the six channels (A - F) can be used completely
(max. 144 GB).
– Mirrored channel mode (maximum security)
Only the populated memory of the two channels A and D can be used (max.
48 GB). The channels B and E serve as safeguarding against failure. The
memory belonging to the channels B and E contain the mirrored data of the
memory belonging to channel A und D. The channels C und F are not used.
– Spare channel mode (large population and large security)
Only the populated memory of the four channels A, B, D and E can be used
(max. 96 GB). The channels C and F serve as safeguarding against failure.
Depending on the mode of operation there are different population require-
ments for the main memory.

20 Technical Manual D2619 (RX/TX300 S5)
Main memory Features
Independent channel mode
Figure 3: Independent channel mode
In figure 3 you can see the slots that must be populated for a minimum config-
uration and for the first two upgrades.
Independent channel mode allows for channels to be populated in any order
and no matching between channels is required.
●All channels in a system will run at the fastest common frequency.
●Can run with differently rated DIMMs and use the settings of the slowest
DIMM within a channel.
●Timings other than frequency can vary between channels.
CPU1
C hannel AC hannel BC hannel C
CPU1
C hannel AC hannel BC hannel C
CPU1
DIMM-3A
C hannel AC hannel BC hannel C
DIMM-2A DIMM-1A DIMM-3B DIMM-2B DIMM-1B DIMM-3C DIMM-2C DIMM-1C
DIMM-3A DIMM-2A DIMM-3B DIMM-2B DIMM-3C DIMM-2C DIMM-1C DIMM-1A DIMM-1B
DIMM-3A DIMM-2A DIMM-3B DIMM-2B DIMM-3C DIMM-2C DIMM-1A DIMM-1B DIMM-1C
1st Upgrade
2nd Upgrade
Minimum Memory Configuration