MSI MS-CF06 User manual

MS-CF06
Industrial Computer Board
User Guide

2Contents
Revision
V1.0, 2023/08
Contents
Regulatory Notices....................................................................................................... 4
Safety Information........................................................................................................ 7
Specifications................................................................................................................ 8
Motherboard Overview............................................................................................... 10
Rear I/O Panel............................................................................................................. 11
PS/2® Keyboard/ Mouse Port ................................................................................ 11
USB 2.0 Ports......................................................................................................... 11
VGA Port................................................................................................................. 11
Connector ....................................................................................... 11
RS232 Serial Port .................................................................................................. 12
RS232/422/485 Serial Port .................................................................................... 12
1 Gbps RJ-45 LAN Jack......................................................................................... 13
2.5 Gbps RJ-45 LAN Jack ...................................................................................... 13
USB 3.2 Gen 2 Ports .............................................................................................. 13
USB 3.2 Gen 1 Ports .............................................................................................. 13
Line-Out Jack ........................................................................................................ 13
Mic-In Jack ............................................................................................................ 13
CPU Socket ................................................................................................................. 15
Introduction to the LGA1700 CPU ..................................................................................................... 15
CPU & Heatsink Installation.................................................................................. 16
Memory ....................................................................................................................... 17
DIMM1~2: DDR5 DIMM Slots ............................................................................................................17
Installing DDR5 UDIMM Memory...................................................................................................... 17
Storage........................................................................................................................ 18
SATA1_2, 3_4: SATA 3.0 6Gb/s Connectors...................................................................................... 18
Expansion Slots .......................................................................................................... 19
PCIE1~2: PCIe Expansion Slots ........................................................................................................19
PCI1~5: PCI Slots ..............................................................................................................................19

3
Contents
Connectors.................................................................................................................. 20
Power Connectors ................................................................................................. 20
JPWR1: 24-Pin ATX Power Connector.............................................................................................. 20
JPWR2: 8-Pin ATX 12V Power Connector.........................................................................................20
Cooling Connectors ............................................................................................... 21
CPUFAN1, SYSFAN1~2: CPU/ System Fan Connectors .................................................................. 21
Audio Connectors .................................................................................................. 22
JAUD1: Front Audio Connector (Line-out/ MIC-in)..........................................................................22
JSPDIF1: S/PDIF Connector..............................................................................................................22
USB Connectors .................................................................................................... 23
JUSB1: USB 2.0 Connector ............................................................................................................... 23
JUSB2: USB 2.0 Type-A Connector................................................................................................... 23
Other Connectors .................................................................................................. 24
JFP1: Front Panel Connector...........................................................................................................24
JGPIO1: GPIO Connector................................................................................................................... 24
JSMB1: SMBus Connector................................................................................................................ 25
JCOM3~6: Serial Port Connectors.................................................................................................... 25
Jumpers ...................................................................................................................... 26
BIOS Setup .................................................................................................................. 27
Entering Setup....................................................................................................... 27
The Menu Bar ............................................................................................................. 32
Main ............................................................................................................................. 33
Advanced..................................................................................................................... 34
Boot.............................................................................................................................. 41
Security........................................................................................................................ 42
Chipset......................................................................................................................... 50
Power .......................................................................................................................... 51
Save & Exit .................................................................................................................. 52
GPIO WDT Programming........................................................................................... 53
Abstract ................................................................................................................. 53
General Purpose IO ............................................................................................... 54
Watchdog Timer .................................................................................................... 55

4Regulatory Notices
Regulatory Notices
FCC-B Radio Frequency Interference Statement
This equipment has been tested and found to comply with the limits
for a Class B digital device, pursuant to part 15 of the FCC rules. These
limits are designed to provide reasonable protection against harmful
interference in a residential installation. This equipment generates,
uses and radiates radio frequency energy, and, if not installed and
used in accordance with the instructions, may cause harmful interference to radio
communications. However, there is no guarantee that interference will not occur in a
particular installation. If this equipment does cause harmful interference to radio or
television reception, which can be determined by turning the equipment off and on, the
user is encouraged to try to correct the interference by one or more of the following
measures:
∙Reorient or relocate the receiving antenna.
∙Increase the separation between the equipment and receiver.
∙Connect the equipment into an outlet on a circuit different from that to which the
receiver is connected.
NOTE
∙The changes or modifications not expressly approved by the party responsible for
compliance could void the user’s authority to operate the equipment.
∙Shield interface cables and AC power cord, if any, must be used in order to comply
with the emission limits.
FCC Conditions
This device complies with part 15 of the FCC Rules. Operation is subject to the
following two conditions:
∙This device may not cause harmful interference.
∙This device must accept any interference received, including interference that may
cause undesired operation.
CE Conformity
Hereby, Micro-Star International CO., LTD declares that this device is in
compliance with the essential safety requirements and other relevant
provisions set out in the European Directive.
WEEE Statement
Under the European Union (“EU”) Directive on Waste Electrical and
Electronic Equipment, Directive 2012/19/EU, products of “electrical and
electronic equipment” cannot be discarded as municipal waste anymore
and manufacturers of covered electronic equipment will be obligated to
take back such products at the end of their useful life.

5
Regulatory Notices
Battery Information
Please take special precautions if this product comes with a battery.
∙Danger of explosion if battery is incorrectly replaced. Replace only with the same or
equivalent type recommended by the manufacturer.
∙Avoid disposal of a battery into fire or a hot oven, or mechanically crushing or
cutting of a battery, which can result in an explosion.
∙Avoid leaving a battery in an extremely high temperature or extremely low air
pressure environment that can result in an explosion or the leakage of flammable
liquid or gas.
∙Do not ingest battery. If the coin/button cell battery is swallowed, it can cause
severe internal burns and can lead to death. Keep new and used batteries away
from children.
European Union:
Batteries, battery packs, and accumulators should not be disposed of as
unsorted household waste. Please use the public collection system to
return, recycle, or treat them in compliance with the local regulations.
BSMI:
廢電池請回收
For better environmental protection, waste batteries should be collected
separately for recycling or special disposal.
California, USA:
The button cell battery may contain perchlorate material and requires
special handling when recycled or disposed of in California.
For further information please visit:
http://www.dtsc.ca.gov/hazardouswaste/perchlorate/
Chemical Substances Information
In compliance with chemical substances regulations, such as the EU REACH
Regulation (Regulation EC No. 1907/2006 of the European Parliament and the
Council), MSI provides the information of chemical substances in products at:
https://csr.msi.com/global/index
Environmental Policy
∙The product has been designed to enable proper reuse of parts and
recycling and should not be thrown away at its end of life.
∙Users should contact the local authorized point of collection for recycling
and disposing of their end-of-life products.
∙Visit the MSI website and locate a nearby distributor for further recycling
information.
∙Users may also reach us at [email protected] for information regarding proper
Disposal, Take-back, Recycling, and Disassembly of MSI products.

6Regulatory Notices
Green Product Features
∙Reduced energy consumption during use and stand-by
∙Limited use of substances harmful to the environment and health
∙Easily dismantled and recycled
∙Reduced use of natural resources by encouraging recycling
∙Extended product lifetime through easy upgrades
∙Reduced solid waste production through take-back policy
Copyright and Trademarks Notice
Copyright © Micro-Star Int’l Co., Ltd. All rights reserved. The MSI logo used is
a registered trademark of Micro-Star Int’l Co., Ltd. All other marks and names
mentioned may be trademarks of their respective owners. No warranty as to accuracy
or completeness is expressed or implied. MSI reserves the right to make changes to
this document without prior notice.
The terms HDMI™, HDMI™ High-Definition Multimedia Interface, HDMI™ Trade dress
and the HDMI™ Logos are trademarks or registered trademarks of HDMI™ Licensing
Administrator, Inc.
Technical Support
If a problem arises with your product and no solution can be obtained from the user’s
manual, please contact your place of purchase or local distributor. Alternatively,
please visit https://www.msi.com/support/ for further guidance.

7
Safety Information
Safety Information
∙The components included in this package are prone to damage from electrostatic
discharge (ESD). Please adhere to the following instructions to ensure successful
computer assembly.
∙Ensure that all components are securely connected. Loose connections may cause
the computer to not recognize a component or fail to start.
∙Hold the motherboard by the edges to avoid touching sensitive components.
∙It is recommended to wear an electrostatic discharge (ESD) wrist strap when
handling the motherboard to prevent electrostatic damage. If an ESD wrist strap
is not available, discharge yourself of static electricity by touching another metal
object before handling the motherboard.
∙Store the motherboard in an electrostatic shielding container or on an anti-static
pad whenever the motherboard is not installed.
∙Before turning on the computer, ensure that there are no loose screws or metal
components on the motherboard or anywhere within the computer case.
∙Do not boot the computer before installation is completed. This could cause
permanent damage to the components as well as injury to the user.
∙If you need help during any installation step, please consult a certified computer
technician.
∙Always turn off the power supply and unplug the power cord from the power outlet
before installing or removing any computer component.
∙Keep this user guide for future reference.
∙Keep this motherboard away from humidity.
∙Make sure that your electrical outlet provides the same voltage as is indicated on
the PSU, before connecting the PSU to the electrical outlet.
∙Place the power cord such a way that people can not step on it. Do not place
anything over the power cord.
∙All cautions and warnings on the motherboard should be noted.
∙If any of the following situations arises, get the motherboard checked by service
personnel:
• Liquid has penetrated into the computer.
• The motherboard has been exposed to moisture.
• The motherboard does not work well or you can not get it work according to user
guide.
• The motherboard has been dropped and damaged.
• The motherboard has obvious sign of breakage.
∙Do not leave this motherboard in an environment above 60°C (140°F), it may damage
the motherboard.

Specifications
Model MS-CF06
Dimensions 305(L)mm x 244(W)mm x 1.6(H)mm, ATX-Size
Processor
∙13th Gen Intel® Raptor Lake-S
i9/i7/i5/i3 Pentium®/ Celeron® IOTG Series Processor, Max 65W
∙12th Gen Intel® Alder Lake-S
i9/i7/i5/i3 Pentium®/ Celeron® IOTG Series Processor, Max 65W
Chipset Intel® H610E
Memory
∙2 x DDR5 UDIMM slots (288-pin, vertical)
-Dual-Channel DDR5, Non-ECC
-Up to 4800 MT/s
-Up to 64GB
Network ∙1 x Intel® I219-LM PCIe 1Gbps LAN (LAN1)
∙1 x Intel® I225-V PCIe 2.5Gbps LAN (LAN2)
Storage ∙4 x SATA 3.0 6Gb/s connectors
-Supports AHCI mode
Expansion
Slots
∙1 x PCIe 5.0 x16 slot, up to 75W (PCIE1)
∙1 x PCIe x4 slot (PCIe x16 slot, PCIE2)
∙5 x PCI slots (PCI1~5)
USB
∙2 x USB 3.2 Gen 2 ports (rear, USB2)
∙2 x USB 3.2 Gen 1 ports (rear, USB3)
∙5 x USB 2.0 ports (2 x rear, 3 x Internal with one vertical Type-A)
Audio ∙Realtek® ALC897 High Definition Audio Codec
Graphics
∙1 x HDMI™ 1.4b up to 4096x2160 @24Hz
∙1 x VGA, up to 1920x1200 @60Hz
∙2 independent display modes supported
-HDMI™
-VGA
Power ∙1 x 24-pin ATX power connector
∙1 x 8-pin 12V ATX power connector
Continued on next column
8Specifications

Model MS-CF06
Rear I/O
∙1 x PS/2® Keyboard & Mouse Port
∙1 x HDMI™ connector (1.4b)
∙1 x VGA Port
∙2 x DB-9 Serial ports
-COM1: Supports RS-232/422/485, 0V/5V/12V, Auto-flow Control
-COM2: Supports RS-232, 0V/5V/12V
∙1 x 1 Gbps RJ-45 LAN port (LAN1)
∙1 x 2.5 Gbps RJ-45 LAN port (LAN2)
∙2 x USB 2.0 ports (USB1)
∙2 x Dual Stacked USB 3.2 Type-A ports
-2 x USB 3.2 Gen 2 Type-A ports (10 Gbps, USB2)
-2 x USB 3.2 Gen 1 Type-A ports (5 Gbps, USB3)
∙1 x Line-out jack
∙1 x Mic-in jack
Onboard
Connectors
∙1 x 4-pin PWM CPU fan connector
∙2 x 4-pin PWM system fan connectors
∙1 x Front panel connector
∙1 x Front audio connector (Line-out & Mic-in)
∙1 x S/PDIF connector
∙4 x Serial port connectors
∙1 x GPIO connector
∙1 x SMBus connector
∙1 x USB 2.0 connector
∙1 x USB 2.0 Type-A connector
∙2 x COM voltage select jumpers
∙5 x PCI voltage select jumpers
∙1 x Clear CMOS jumper
∙1 x ME jumper
∙1 x AT/ ATX mode select jumper
∙1 x Chassis Intrusion jumper
OS Support
∙Windows 10 IoT Enterprise 2021 LTSC (64-bit)
∙Windows 11 IoT Enterprise 22H2 (64-bit)
∙Linux Kernel 5.xx, Ubuntu 22.04 LTS Pre-scan
Certification CE, FCC Class B, BSMI, RCM, VCCI
Environment
∙Operating Temperature: 0 ~ 60°C
∙Storage Temperature: -20 ~ 80°C
∙Relative Humidity: 10 ~ 90%, non-condensing
9
Specifications

Motherboard Overview
Rear
I/O Panel
DIMM1
JPWR2 SYSFAN1
JUSB2JCOM4JCOM3JCOM5JSPDIF1 JCOM6
CMOS1
JAUD1
SYSFAN2
CPUFAN1
JPWR1
JSMB1
SATA1_2
PCIE1
PCIE2
JPCISEL_1
JPCISEL_2
JPCISEL_4
JPCISEL_3
JPCISEL_5
PCI1
PCI2
PCI3
PCI4
PCI5
SATA3_4
JUSB1
JME_DIS1
JGPIO1
JFP1
JATX1
JCASE1
DIMM2
JCOMP1
JCOMP2
10 Motherboard Overview

Rear I/O Panel
COM1
USB 3.2
Gen 2
Ports
USB 3.2
Gen 1
Ports
USB 2.0 Ports
VGA Port Line-Out
Jack
Mic-in
Jack
1 Gbps 2.5 Gbps
RJ-45 LAN Jacks
PS/2®
Keyboard &
Mouse Port
RS232/422/485
Serial Port
RS232
Serial Port
LAN2
LAN1
COM2
USB1 USB2 USB3
PS/2® Keyboard/ Mouse Port
The PS/2® keyboard/ mouse DIN connector is for PS/2® keyboard/ mouse.
USB 2.0 Ports
These connectors are provided for USB peripheral devices. (Speed up to 480 Mbps)
⚠
Important
High-speed devices are recommended for USB 3.2 ports whereas low-speed devices,
such as mouse or keyboard, are suggested to be plugged into the USB 2.0 ports.
VGA Port
The VGA port supports monitors and other VGA interface devices.
Connector
The High-Definition Multimedia Interface (HDMI™) is an all-digital audio/ video
interface capable of transmitting uncompressed streams. HDMI™ supports all TV
format, including standard, enhanced, or high-definition video, plus multi-channel
digital audio on a single cable.
11
Rear I/O Panel

RS232 Serial Port
The serial port is a 16550A high speed communications port that sends/receives 16
bytes FIFOs. It supports barcode scanners, barcode printers, bill printers, credit card
machine, etc.
1155
6699
RS232
PIN SIGNAL DESCRIPTION
1
2
3
4
5
6
7
8
9
NDCD
NSIN
NSOUT
NDTR
GND
NDSR
NRTS
NCTS
VCC_COM
Data Carrier Detect
Signal In
Signal Out
Data Terminal Ready
Signal Ground
Data Set Ready
Request To Send
Clear To Send
VCC_COM
RS232/422/485 Serial Port
The serial port is a 16550A high speed communications port that sends/receives 16
bytes FIFOs. It supports barcode scanners, barcode printers, bill printers, credit card
machine, etc.
1155
6699
RS232
PIN SIGNAL DESCRIPTION
1
2
3
4
5
6
7
8
9
NDCD
NSIN
NSOUT
NDTR
GND
NDSR
NRTS
NCTS
VCC_COM
Data Carrier Detect
Signal In
Signal Out
Data Terminal Ready
Signal Ground
Data Set Ready
Request To Send
Clear To Send
VCC_COM
RS422
PIN SIGNAL DESCRIPTION
1
2
3
4
5
6
7
8
9
422 TXD-
422 TXD+
422 RXD+
422 RXD-
GND
NC
NC
NC
NC
Transmit Data, Negative
Transmit Data, Positive
Receive Data, Positive
Receive Data, Negative
Signal Ground
No Connection
No Connection
No Connection
No Connection
RS485
PIN SIGNAL DESCRIPTION
1
2
3
4
5
6
7
8
9
TXD-
NC
TXD+
NC
GND
NC
NC
NC
NC
Transmit Data, Negative
No Connection
Transmit Data, Positive
No Connection
Signal Ground
No Connection
No Connection
No Connection
No Connection
12 Rear I/O Panel

1 Gbps RJ-45 LAN Jack
The standard RJ-45 LAN jack is provided for connection to the Local Area Network
(LAN). You can connect a network cable to it.
Link/ Activity LED
Status Description
Off No link
Yellow Linked
Blinking Data activity
Speed LED
Status Description
Off 10 Mbps
Green 100 Mbps
Orange 1 Gbps
2.5 Gbps RJ-45 LAN Jack
The standard RJ45 LAN jack is provided for connection to the Local Area Network
(LAN). You can connect a network cable to it.
Link/ Activity LED
Status Description
Off No link
Yellow Linked
Blinking Data activity
Speed LED
Status Description
Off 10/100 Mbps
Green 1000 Mbps
Orange 2.5 Gbps
USB 3.2 Gen 2 Ports
USB 3.2 Gen 2, the SuperSpeed USB 10Gbps, delivers high-speed data transfer for
various devices, such as storage devices, hard drives, video cameras, etc.
USB 3.2 Gen 1 Ports
The USB (Universal Serial Bus) port is for attaching USB devices such as keyboards,
mouse, or other USB-compatible devices. USB 3.2 Gen 1 supports data transfer rates
up to 5 Gbps.
Line-Out Jack
This connector is provided for headphones or speakers.
Mic-In Jack
This connector is provided for microphones.
13
Rear I/O Panel

Component Contents
Component Page
CPU Socket 15
Memory 17
DIMM1~2: DDR5 DIMM Slots 17
Storage 18
SATA1_2, 3_4: SATA 3.0 6Gb/s Connectors 18
Expansion Slots 19
PCIE1~2: PCIe Expansion Slots 19
PCI1~5: PCI Slots 19
Connectors 20
Power Connectors 20
JPWR1: 24-Pin ATX Power Connector 20
JPWR2: 8-Pin ATX 12V Power Connector 20
Cooling Connectors 21
CPUFAN1, SYSFAN1~2: CPU/ System Fan Connectors 21
Audio Connectors 22
JAUD1: Front Audio Connector (Line-out/ MIC-in) 22
JSPDIF1: S/PDIF Connector 22
USB Connectors 23
JUSB1: USB 2.0 Connector 23
JUSB2: USB 2.0 Type-A Connector 23
Other Connectors 24
JFP1: Front Panel Connector 24
JGPIO1: GPIO Connector 24
JSMB1: SMBus Connector 25
JCOM3~6: Serial Port Connectors 25
Jumpers 26
14 Component Contents

⚠
Important
∙ Always unplug the power cord from the power outlet before installing or removing
the CPU.
∙ When installing a CPU, always remember to install a CPU heatsink. A CPU heatsink
is necessary to prevent overheating and maintain system stability.
∙ Confirm that the CPU heatsink has formed a tight seal with the CPU before booting
your system.
∙ Overheating can seriously damage the CPU and motherboard. Always make sure
the cooling fans work properly to protect the CPU from overheating. Be sure to
apply an even layer of thermal paste (or thermal tape) between the CPU and the
heatsink to enhance heat dissipation.
∙ Whenever the CPU is not installed, always protect the CPU socket pins by covering
the socket with the plastic cap.
∙ If you purchased a separate CPU and heatsink/ cooler, Please refer to the
documentation in the heatsink/ cooler package for more details about installation.
CPU Socket
Introduction to the LGA1700 CPU
The surface of the LGA1700 CPU has four
notches and a golden triangle to assist in
correctly lining up the CPU for motherboard
placement. The golden triangle is the Pin 1
indicator.
15
CPU Socket

CPU & Heatsink Installation
Use appropriate ground straps, gloves and ESD mats to protect yourself from
electrostatic discharge (ESD) while installing the processor.
⚠
Important
Images are for illustration purposes only; actual parts may vary.
11
22
33
44
55
66
77
88
99
⚽
https://youtu.be/KMf9oIDsGes
16 CPU Socket

Memory
DIMM1~2: DDR5 DIMM Slots
The DIMM slots is intended for memory modules.
Installing DDR5 UDIMM Memory
1. Open the side clips to unlock the DIMM slot.
2. Insert the DIMM vertically into the slot, ensuring that the off-center notch at the bottom
aligns with the slot.
3. Push the DIMM firmly into the slot until it clicks and the side clips automatically close.
4. Verify that the side clips have securely locked the DIMM in place.
⚠
Important
∙ Always insert memory modules in the DIMM2 slot first.
∙ You can barely see the golden finger if the DIMM is properly inserted in the DIMM slot.
∙ To ensure system stability for Dual channel mode, memory modules must be of the
same type, number and density.
DIMM1 DIMM2
17
Memory

Storage
SATA1_2, 3_4: SATA 3.0 6Gb/s Connectors
These connectors are SATA 6Gb/s interface port, it can connect to one SATA device.
⚠
Important
∙ These SATA connectors support hot plug.
∙ Please do not fold the SATA cable at a 90-degree angle. Data loss may result during
transmission otherwise.
∙ SATA cables have identical plugs on either sides of the cable. However, it is
recommended that the flat connector be connected to the motherboard for space
saving purposes.
SATA3_4
SATA1_2
18 Storage

Expansion Slots
PCIE1:PCIe 5.0 x16
PCI1
PCI2
PCI3
PCI4
PCI5
PCIE2:PCIe 5.0 x16
(PCIe 5.0 x4 signal)
PCIE1~2: PCIe Expansion Slots
The PCI Express(Peripheral Component Interconnect Express) slots support PCIe
interface expansion cards.
PCI1~5: PCI Slots
The PCI (Peripheral Component Interconnect) slots support PCI interface expansion
cards.
⚠
Important
When adding or removing expansion cards, make sure that you unplug the power
supply first. Meanwhile, read the documentation for the expansion card to configure
any necessary hardware or software settings for the expansion card, such as jumpers,
switches or BIOS configuration.
19
Expansion Slots

Connectors
Power Connectors
JPWR2
JPWR1
JPWR1: 24-Pin ATX Power Connector
This connector allows you to connect an ATX power supply.
1
12 24
13
JPWR1
1 +3.3V 13 +3.3V
2 +3.3V 14 -12V
3GND 15 GND
4 +5V 16 PS-ON#
5GND 17 GND
6 +5V 18 GND
7GND 19 GND
8 PWR OK 20 Res
9 5VSB 21 +5V
10 +12V 22 +5V
11 +12V 23 +5V
12 +3.3V 24 GND
JPWR2: 8-Pin ATX 12V Power Connector
This connector allows you to connect an ATX power supply.
1
4
85
JPWR2
1 GND 5 P12V
2 GND 6 P12V
3 GND 7 P12V
4 GND 8 P12V
⚠
Important
Make sure that all the power cables are securely connected to a proper power supply
to ensure stable operation of the system.
20 Connectors