WinSystems SYS-405 User manual

SYS-405 User Manual
715 Stadium Drive
Arlington, TX 76011
[phone]
www.winsystems.com

SYS-405 User Manual
2014-07-21 Page i
Table of Contents
Introduction.................................................................................................................................................................1
Specifications ............................................................................................................................................................... 1
1.0 Before You Begin ................................................................................................................................................ 2
1.1 Removing the Enclosure Top Cover .......................................................................................................................... 2
1.2 Positioning the Board and Mounting Plate for Reference........................................................................................ 3
1.3 Locating Connectors and Jumpers ............................................................................................................................ 4
1.4 External Connectors, Ports, and Inputs .................................................................................................................... 5
2.0 Connectors, Jumpers, and I/O ............................................................................................................................. 6
2.1 Power ........................................................................................................................................................................ 6
2.2 Video ......................................................................................................................................................................... 8
2.3 Audio ....................................................................................................................................................................... 12
2.4 System Management .............................................................................................................................................. 13
2.5 Serial........................................................................................................................................................................ 14
2.6 USB .......................................................................................................................................................................... 14
2.7 Ethernet .................................................................................................................................................................. 15
2.8 Serial ATA (SATA) .................................................................................................................................................... 17
2.9 MiniPCIe .................................................................................................................................................................. 19
2.10 IO60 Expansion Bus................................................................................................................................................. 21
3.0 Setup ................................................................................................................................................................ 22
3.1 Installation/Hookup ................................................................................................................................................ 22
3.2 Power Up................................................................................................................................................................. 22
4.0 BIOS Updates.................................................................................................................................................... 23
5.0 BIOS Settings .................................................................................................................................................... 24
5.1 Boot Up and the Main Menu .................................................................................................................................. 24
5.2 Advanced Menu ...................................................................................................................................................... 26
5.3 Others Menu ........................................................................................................................................................... 29
5.4 Security Menu ......................................................................................................................................................... 32
5.5 Boot Menu .............................................................................................................................................................. 33
5.6 Exit Menu ................................................................................................................................................................ 34
6.0 Cables and Drivers ............................................................................................................................................ 35
7.0 Mechanical Drawings........................................................................................................................................ 36
7.1 Top Side Mounting Board with Dimensions ........................................................................................................... 36
7.2 Side and Faceplate View with Dimensions ............................................................................................................. 37
Appendix A – Best Practices ....................................................................................................................................... 38
Warranty Information ................................................................................................................................................ 39

SYS-405 User Manual
2014-07-21 Page 1 of 39
Introduction
The SYS-405 is a high-performance, industrial, small form factor (SFF) system capable of operating at very high
temperatures without a fan or heat-pipe. The processor is an Intel E3800 Atom series, integrated into the SYS-405
using a COM Express Type 6 module. The 5052 aluminum alloy enclosure is ideal for applications in extreme
environments, and the sturdy base plate provides a thermal solution that protects the PCB assembly. For additional
flexibility and ease of system integration, the SYS-405 accepts a wide input power range from +10 to +50VDC. Software
and drivers are available at www.winsystems.com.
If additional information is required, call WinSystems Technical Support at [phone] and speak with one of our
Application Engineers; they are available M-F, 8 AM to 5 PM, Central Daylight Time (CDT) for assistance with all of your
product requirements.
Specifications
Feature
SYS-405S
SYS-405D
SYS-405Q
Processor
Intel® Atom™ E3815
Intel® Atom™ E3827
Intel® Atom™ E3845
- Core Speed
1.46 GHz
1.75 GHz
1.91 Hz
- Number of Cores
1
2
4
- L2 Cache
512 KB
1 MB
2 MB
Graphics
Intel® Gen 7 Graphics Engine
- Graphics Frequency
400 MHz
542/792 MHz (Turbo)
- Virtualization
Hardware based Intel® VT-x
Operating Systems
Linux, Windows, DOS, and other x86 compatible
Video Interfaces
Up to 2 Active Displays
VGA up to 2560x1536 at 24bpp
DisplayPort 1.1
LVDS 18 or 24 Bpp
Memory (RAM)
2, 4, or 8 GB DDR3L SDRAM
BIOS
Phoenix
Ethernet
2 Intel® I210 GbE controllers
- Speed
Auto-negotiation for 10/100/1000 Mb/s
- Advanced Features
IEEE1588 and IEEE 802.1AS time stamping
IEEE802.Qav Audio-Video Bridging (AVB)
Advanced Power Management (APM) Support
Remote boot
Storage (Bootable)
1 SATA (2.0) channel
1CFAST socket (on back of the board)
1 mSATA socket (MiniPCIe socket)
Serial I/O
2 serial ports (RS-232/422/485)
Bus Expansion
2x MiniPCIe (One supports mSATA, One supports USB 2.0)
IO60 (SPI, I
2
C, PWM, UART)
USB
1 USB 3.0 port, 3 USB 2.0 ports, and 1 USB interface @ J14
Watchdog Timer
Adjustable from 1 second to 255 minute reset
Audio
HD Audio supported
- Audio Interfaces
DisplayPort 1.1
Line Out, Line In, Mic to 3.5 mm
7.1 Surround
Power1
+10 to 50VDC input
(7W typical/ 9 W Max)
+10 to +50VDC input
(7.5W typical/ 10W Max)
+10 to +50VDC input
(8.75W typical/ 12W Max)
Mechanical
Dimensions: 5 x 8 x 2.5 inches (127 x 203 x 63.5 mm)
Weight
Weight: 2.65 lbs. (1.2Kg)
Operating Temperature Range
-40°C to +85°C (-40°F to +185°F)
Storage Temperature
-50°C to +95°C (-58°F to +203°F)
Humidity Range
0 - 90% Relative Humidity (RH), Non-Condensing
1Power consumption estimates are for the SYS-405 only and exclude any external devices.

SYS-405 User Manual
2014-07-21 Page 2 of 39
1.0 Before You Begin
This User Manual provides instructions for optimal performance and prevention of injury and/or damage to the
product. You may VOID the warranty and/or cause damage by neglecting the Best Practices as outlined in Appendix - A.
1.1 Removing the Enclosure Top Cover
Use a #2 Phillips head screwdriver to remove the nine (6-32 x 1.4 inch) flat head screws that secure the enclosure top
cover to the SYS-405 frame, as depicted in Figure 1.1-1. Once all screws are out, lift the cover and set aside.
*CFAST cover uses identical screws as the enclosure top cover.
Figure 1.1-1. Removing the Enclosure Top Cover.

SYS-405 User Manual
2014-07-21 Page 3 of 39
1.2 Positioning the Board and Mounting Plate for Reference
To ensure your view is consistent with the illustrations on the pages that follow, position the mounting plate and
board with the component side facing you as depicted in Figures 1.2-1 and 1.3-1. These illustrations provide locations
of connectors and jumpers, and other information critical to setup and configuration.
Figure 1.2-1. Positioning the Board and Mounting Plate for Reference.

SYS-405 User Manual
2014-07-21 Page 4 of 39
1.3 Locating Connectors and Jumpers
The topside of the board contains both connectors and jumper blocks; jumper blocks are used to configure the
SYS-405 across a wide range of requirements and modes of operation. Figure 1.3-1 provides locations of all jumpers
and connectors for the SYS-405 board. This figure does not include the mounting board due to space constraints.
IMPORTANT
!This product ships with a heat sink; removing the heat sink VOIDS the warranty.
NOTE: To view information on a connector, switch, or jumper, click on its descriptor box. You’ll be taken to another page within the
manual with more information. Once there, click on the destination image or text to go back, if desired.
Figure 1.3-1. Connectors and Jumpers.

SYS-405 User Manual
2014-07-21 Page 5 of 39
1.4 External Connectors, Ports, and Inputs
All external connectors, ports, and inputs are on the SYS-405 faceplate.
Figure 1.4-1. External Connectors, Ports, and Inputs on the SYS-405 Faceplate.

SYS-405 User Manual
6
2014-07-21 Page 6 of 39
2.0 Connectors, Jumpers, and I/O
The following sections contain important information about various elements on the SYS-405 board, such as jumpers and connectors that are crucial in
configuring the SYS-405 for operation. Use these tables along with the figures in sections 1.2 through 1.4 to set up the SYS-405.
2.1 Power
POWER
Name
Layout
Additional Information
PWR (Power)
Button
[SW1]
The PWR button (SW1), located on the lower left front of the faceplate between the microphone input and the
power input, controls power to the SYS-405 board. Upon initial hookup of power to J5
(the 10-50VDC green input connector), the PWR button is bypassed and the board powers up without further action
from the user. However, after initial power up:
•A brief press of the PWR button initiates a soft on or off, depending on the present state
•If the unit becomes unresponsive, press and hold the PWR button for four (4) seconds, then release, to perform
a hard restart
+10 - +50 VDC
Power Input
[J5]
The SYS-405 can operate from +10 to +50 VDC (+/-5%). The green power input connector (J5) is located next to the
PWR button on the lower left of the faceplate.
WARNING! Connect voltage as depicted, or you may damage the board and void the warranty.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Phoenix/1803277
G201-0002-500
Mating Connector
Phoenix/1803578
G201-0002-550
Crimp Connector
Connection Method: Screw
N/A

SYS-405 User Manual
6
2014-07-21 Page 7 of 39
POWER
Name
Layout
Additional Information
Fan Voltage
Output
[JP2]
Default
Setting
For 5VDC @
J10
For 12V DC
@ J10
This jumper setting provides either a +5 or +12 VDC output at pin 3 (FAN_VCC) of connector J10, External Fan
Connect. Select the appropriate voltage output based on fan requirements. The default setting is
no jumper.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Samtec/TMM-103-01-L-S-SM-P-TR
G650-2003-0E0
Jumper
Samtec/2SN-BK-G
G201-0002-005
Jumper Kit, 2MM
N/A
KIT-JMP-G-200
External Fan
Connect
[J10]
The fan voltage output of this connector is determined by the jumper configuration on JP2.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Molex/22-11-2042
G201-0004-003
Mating Connector
Molex/22-01-2045
N/A
Crimp Connector
Molex/2759, 4809 KK® Crimp terminal
N/A
Battery Backup
Select
[JP3]
No battery
backup
External
battery
backup
Internal
battery
backup
This jumper selects whether back up for the real time clock, CMOS and optional GPS are performed by an internal
(optional) or external battery. To use an external battery (connected at J7), jumper pins 1 & 2 (his is default). For
using the optional internal battery, jumper pins 2 & 3. However, note there is no internal battery shipped with the
SYS-405.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Header
Samtec/TMM-103-01-L-S-SM-P-TR
G650-2003-0E0
Jumper
Samtec/2SN-BK-G
G201-0002-005
Jumper Kit, 2MM
N/A
KIT-JMP-G-200
External Battery
Connect
[J7]
Supplies the SYS-405 board with external standby power for the real-time clock, CMOS, and optional GPS. An
extended temperature lithium battery is available from WinSystems, part # BAT-LTC-E-36-16-1 or BAT-LTC-E-36-27-
1. For OEM applications, an on-board battery can be integrated into the motherboard. Please contact a WinSystems’
Application Engineer for more information.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Molex/ 22-11-2032
G201-0003-001
Mating Connector
Molex/22-01-2035
N/A
Crimp Connector
Molex/ 2759, 4809 KK® Crimp terminal
N/A

SYS-405 User Manual
6
2014-07-21 Page 8 of 39
2.2 Video
VIDEO
Name
Layout
Additional Information
DisplayPort
1.1
[J15]
DisplayPort 1.1 is situated between the USB and Serial ports. Aside from video, it also delivers bandwidth capable of
high definition (HD) audio. See section 2.3 Audio for more information.
Analog VGA
[J21]
The SYS-405 supports analog VGA and delivers video to the SYS-405 faceplate VGA connector.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Molex/87832-1420
G650-2014-0H0
Mating Connector
Molex/087568-1443
N/A
Crimp Connector
Molex/50394-8051
N/A
VGA
The VGA video output is located above the 10-50VDC power input connector on the SYS-405 faceplate.

SYS-405 User Manual
6
2014-07-21 Page 9 of 39
VIDEO
Name
Layout
Additional Information
LVDS &
Backlight
[J12]
Flat panel displays connect to the SYS-405 motherboard at J12. The board supports LVDS resolutions up to 1920x1200
at 24 bits per pixel (Bpp). A USB Touchscreen interface connection is located at J14. Panel color mode selection for 6-or
8-bits per pixel is configured at JP4. All resolutions are panel hardware dependent.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
HIRose/DF19G-30P-1H(54)
G650-3030-0F0
Mating Connector
HIRose DF19G -30S-1C(05)
N/A
Crimp Connector
DF19A Series
N/A
LVDS
Configuration
[JP5]
Configuration for LVDS, LVDS output swing, and clock frequency for I2C is made at JP5 using the selection options
depicted in the layout illustration to the left and configuration table below.
Connector Reference
MFG/Part Number
WinSystems Part Number
PCB Connector
Samtec/ TMM-104-01-G-D-SM-P-TR
G650-2008-0G0
Jumper
Samtec/2SN-BK-G
G201-0002-005
Jumper Kit, 2MM
N/A
KIT-JMP-G-200

SYS-405 User Manual
6
2014-07-21 Page 10 of 39
VIDEO
Name
Layout
Additional Information
USB
Touchscreen
[J14]
J14 (USB 5) provides Plug-and-Play support for a USB Touchscreen. Aside from a simpler and faster interface, it also
provides power within the USB cable, eliminating the need for a separate, dedicated cable to power the touchscreen.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Molex/53398-0571
G650-2005-000
Mating Connector
Molex/51021-0500
N/A
Crimp Connector
Molex/50394-8051
N/A
Bits Per Pixel
(Bpp)
[JP4]
Flat Panel Controller. JP4 is panel dependent and controls 6 or 8-bits per pixel where supported.
WARNING! Jumpering more than one set of pins on JP4 at a time will damage the board.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Samtec/ASP-67231-02
G650-2004-0G0
Jumper
Samtec/2SN-BK-G
G201-0002-005
Jumper Kit, 2MM
N/A
KIT-JMP-G-200

SYS‐405UserManual




6

2014‐07‐22Page11of39
VIDEO
NameLayoutAdditionalInformation
Backlight
Power

[JP7]

Usethelayoutgraphicontheleftand/ortheconfigurationtablebelowtoselecttheappropriatejumperforbacklight
powerandbacklightenableatJP7.


WARNING!JP7supportsonejumperforbacklightenablesettingsandonejumperforbacklightpower
settings(twototal).However,jumperingmorethanonesetofpins(forbacklightenable)andonesetofpins
(forbacklightpower)willdamagetheboard.

ConnectorReferenceMFR/PartNumber WinSystemsPartNumber
PCBConnector Samtec/TMM‐104‐01‐G‐D‐SM‐P‐TR G650‐2008‐0G0
Jumper Samtec/25N‐BK‐GG201‐0002‐005
JumperKit,2MM N/A KIT‐JMP‐G‐200

Panel
Orientation

[JP6]

Usethelayoutgraphicontheleftand/ortheconfigurationtablebelowtoselecttheappropriatejumperforpanel
orientation.


WARNING!JP6supportsonejumperforhorizontalpanelorientationandonejumperforverticalpanel
orientation(twototal).However,jumperingmorethanonesetofpins(forvertical)andonesetofpins(for
horizontal)willdamagetheboard.

ConnectorReferenceMFR/PartNumberWinSystemsPartNumber
PCBConnector Samtec/TMM‐104‐01‐G‐D‐SM‐P‐TR G650‐2008‐0G0
Jumper Samtec/25N‐BK‐GG201‐0002‐005
JumperKit,2MM N/A KIT‐JMP‐G‐200


SYS-405 User Manual
6
2014-07-21 Page 12 of 39
2.3 Audio
The SYS-405 uses the Realtek ALC888S-VD codec controller which provides both Digital and Analog channels. The controller has three jack detection pins and a built-in beep generator. The SYS-
405 supports three audio interfaces - one digital (DisplayPort 1.1), two analog (Stereo Audio [Line-In/Line-Out/Microphone], and one HD Audio (7.1 Surround). The DisplayPort 1.1 interface
located at J15 also delivers video capability; see more information about this interface in the Video section of this user manual.
AUDIO
Name
Layout
Additional Information
Stereo Audio
(Line-In, Line-Out,
& Mic)
[J6]
The SYS-405 uses 3.5-mm stereo line-out, line-in, and microphone jacks at J6. The diagram to
the left depicts the line-in, line-out, and microphone-in ports that are on the faceplate.
HD Audio 7.1
Surround
[J2]
HD Audio connection. WinSystems cable CBL-AUDIO7-102-12, delivers 7.1 (surround sound)
audio from this connector. CBL-AUDIO5-102-12 delivers 5.1 audio, and CBL-AUDIO3-102-12
delivers stereo audio.
Connector
Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Molex/501931-3070
G650-2030-0HC
Mating Connector
Molex/503110
N/A
Crimp Connector
Molex/501930
N/A

SYS-405 User Manual
6
2014-07-21 Page 13 of 39
2.4 System Management
SYSTEM MANAGEMENT
Name
Layout
Additional Information
System
Management
[J4]
J4 supports many system features. The primary uses are to provide a security feature to
manage system intrusion and provide notification on thermal status. Pin 2 (LID#) signifies
whether the system is on/off or opened/closed and can be used for an intruder alert. If this
particular bit is set, the user can wire it to their system to initiate a system shut down. Pin 4
provides thermal trip status, action (e.g., system shut down) is taken in response to the
system overheating, and the user can be notified of a thermal trip. More information
regarding thermal protection signaling is provided in the table below. Additionally, you can tie
J4 to a sleep mode via Pin 3.
Connector
Reference
MFR/Part Number
WinSystems Part
Number
PCB Connector
Molex/87832-2020
G650-2020-0H0
Mating Connector
Molex/51110-2050
N/A
Crimp Connector
Molex/50394-8051
N/A

SYS-405 User Manual
6
2014-07-21 Page 14 of 39
2.5 Serial
SERIAL
Name
Layout
Additional Information
Serial I/O
[J19A]
Serial I/O
[J19B]
The SYS-405 is equipped with two on-board serial ports (RS-232/422/485) at J19. Both serial
channels use the advanced EXAR SP339E multiprotocol transceiver. Both ports are configured
in the BIOS and include options for 120-ohm receiver termination, slew rate, and protocol.
2.6 USB
USB
Name
Layout
Additional Information
USB 2.0 / 3.0
(Channels 1 & 3)
[J11]
USB 2.0
(Channels 2 & 4)
[J13]
J11 provides USB 3.0 on the bottom port (CH3) and USB 2.0 on the top port (CH1). J13 provide
USB 2.0 on both ports (CH2 & CH4).

SYS-405 User Manual
6
2014-07-21 Page 15 of 39
2.7 Ethernet
The two Ethernet ports are labeled ENET-1 and ENET-2 (due to space constraints on the faceplate), but the term Ethernet is used in this Manual.
ETHERNET
Name
Layout
Additional Information
Ethernet
[J11, J13]
Two Intel I210 Gigabit Ethernet controllers provide standard IEEE 1588 and 802.1AS protocol time-stamping.
Each Ethernet interface includes 10/100/1000 MB multi-speed, full, and half-duplex operation.
Ethernet (GPIO)
Controller
[J20]
The SYS-405 is equipped with an Ethernet GPIO connector at J20, which is associated with ENET-2 at J13.
Reference power to J20 is controlled by jumper settings on JP8 (next page).
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Molex/87832-1020
G650-2010-0H0
Mating Connector
Molex/51110-1050
N/A
Crimp Connector
Molex/50394-8051
N/A

SYS-405 User Manual
6
2014-07-21 Page 16 of 39
ETHERNET
Name
Layout
Additional Information
Ethernet GPIO
Reference Voltage
Selection
[JP8]
The table below provides jumpers for voltage settings on JP8. The board supports voltages of 3.3V, 5V,
and 12V.
WARNING! Jumpering more than one set of pins at a time will damage the board.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Samtec/TMM-104-01-G-D-SM-
P-TR
G650-2008-0G0
Jumper
Samtec/25N-BK-G
G201-0002-005
Jumper Kit, 2MM
N/A
KIT-JMP-G-200
Ethernet LEDs
On-board Ethernet activity LEDs are built into the ENET connectors at
J11 & J13. There is one green LED (left) and one bi-color green/yellow
LED (right). Activity signals for these lights are defined in the table
below.

SYS-405 User Manual
6
2014-07-21 Page 17 of 39
2.8 Serial ATA (SATA)
SERIAL ATA (SATA)
Name
Layout
Additional Information
Serial ATA
[J3]
The bootable SATA (2.0) interface is located at J3. WinSystems offers CBL-SATA-701-20 for this connector.
NOTE: J3 cannot be used as SATA when J9 mSATA is present.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Molex/67800-5003
G650-3007-000
Mating Connector
Molex: W/Cable: 68561-0014
CBL-SATA-701-20
SATA Power
[J1]
Power is supplied to the SATA device via the connector at J1. WinSystems offers CBL-PWR-117-12 for this connector.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Molex/22-11-2042
G201-0004-003
Mating Connector
Molex/22-01-2045
N/A
Crimp Connector
Molex/2759, 4809 KK® Crimp terminal
N/A

SYS-405 User Manual
6
2014-07-21 Page 18 of 39
SERIAL ATA (SATA)
Name
Layout
Additional Information
SATA SSD (CFAST)
[J103]
On back of the
board
The SYS-405 supports CFAST storage at J103 located on the back of the board. Pin definitions are provided in the table below.
Connector Reference
MFR/Part Number
WinSystems Part Number
PCB Connector
Molex/0679105700
G650-2024-3K0
Mating Connector
No Mating Connector/CFAST Card
N/A