Fujitsu D2509 User manual

System Board D2509
for TX200 S4
Technical Manual
Edition October 2007

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Copyright and Trademarks
Copyright © 2007 Fujitsu Siemens Computers GmbH.
All rights reserved.
Delivery subject to availability; right of technical modifications reserved.
All hardware and software names used are trademarks of their respective manufacturers.

D2509 (TX200 S4) Technical Manual
Contents
1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
2 Important notes . . . . . . . . . . . . . . . . . . . . . . . . . . 7
2.1 Notes on safety . . . . . . . . . . . . . . . . . . . . . . . . . . 7
2.2 CE Certificate . . . . . . . . . . . . . . . . . . . . . . . . . . 10
2.3 Environmental Protection . . . . . . . . . . . . . . . . . . . 11
3 Features . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
3.1 Overview . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
3.2 Main memory . . . . . . . . . . . . . . . . . . . . . . . . . . 16
3.3 PCI slots . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
3.4 Screen resolution . . . . . . . . . . . . . . . . . . . . . . . 20
3.5 Temperature / system monitoring . . . . . . . . . . . . . . . 20
3.6 LEDs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 22
3.7 Interfaces and connectors . . . . . . . . . . . . . . . . . . . 24
3.7.1 External ports . . . . . . . . . . . . . . . . . . . . . . . . . . 25
3.8 Settings with switches . . . . . . . . . . . . . . . . . . . . . 27
4 Replacing the lithium battery . . . . . . . . . . . . . . . . . 29
Abbreviations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 31

D2509 (TX200 S4) Technical Manual 5
1 Introduction
This technical manual describes the system board D2509, which can be
equipped with one or two Intel®XEON™ processors.
Further information about drivers is provided in the readme files on the hard
disk, on the supplied “ServerStart“ or “Update“ CDs.
You will find further information in the BIOS description.
Notational conventions
The meanings of the symbols and fonts used in this manual are as follows:
italics indicates commands, menu items, file and path
names or software programs
fixed font indicate system output on the monitor
semi-bold fixed
font
indicates values to be entered through the keyboard
[Key symbol] indicates keys according to their representation on the
keyboard
If capital letters are to be entered explicitly, then the
Shift key is shown, e.g. [SHIFT] - [A] for A.
If two keys need to be pressed at the same time, then
this is shown by placing a hyphen between the two key
symbols.
“quotation marks” indicates names and terms that are being empha-
sized.
Êindicates an operation that to be performed
VCAUTION! indicates warnings, which, if ignored, will endanger
your health, destroy the system or lead to the loss of
data.
Iindicates additional information, notes and tips
Table 1: Notational conventions

D2509 (TX200 S4) Technical Manual 7
2 Important notes
In this chapter you will find essential information regarding safety when working
with your server.
VCAUTION!
With the system board installed you must open the system to access the
system board. How to access the system board of your system is
described in the appropriate service supplement.
When handling the system board, refer to the specific notes on safety in
the operating manual and/or service supplement for the respective
server.
2.1 Notes on safety
VCAUTION!
●The actions described in these instructions should only be performed
by authorized, qualified personnel. Equipment repairs should only be
performed by qualified staff. Any failure to observe the guidelines in
this manual, and any unauthorized openings and improper repairs
could expose the user to risks (electric shock, fire hazards) and could
also damage the equipment. Please note that any unauthorized
openings of the device will result in the invalidation of the warranty
and exclusion from all liability.
●Transport the device only in the antistatic original packaging or in
packaging that protects it from knocks and jolts.
●Only install expansions that are allowed for the system board. If you
install other expansions, you may damage the requirements and rules
governing safety and electromagnetic compatibility or your system.
Information on which system expansions are suitable can be
obtained from the customer service centre or your sales outlet.
●The warranty expires if the device is damaged during the installation
or replacement of system expansions.

8 Technical Manual D2509 (TX200 S4)
Notes on safety Important notes
V●Components can become very hot during operation. Ensure you do
not touch components when making extensions to the system board.
There is a danger of burns!.
●Transmission lines to peripheral devices must be adequately
shielded.
●To the LAN wiring the requirements apply in accordance with the
standards EN 50173 and EN 50174-1/2. As minimum requirement
the use of a protected LAN line of category 5 for 10/100 MBps
Ethernet, and/or of category 5e for Gigabit Ethernet is considered.
The requirements of the specification ISO/IEC 11801 are to be
considered.
●Never connect or disconnect data transmission lines during a storm
(lightning hazard).
Batteries
VCAUTION!
●Incorrect replacement of lithium battery may lead to a risk of
explosion. The batteries may only be replaced with identical batteries
or with a type recommended by the manufacturer.
It is essential to observe the instructions in chapter “Replacing the
lithium battery”.

D2509 (TX200 S4) Technical Manual 9
Important notes Notes on safety
Modules with electrostatic-sensitive components
Systems and components that might be damaged by electrostatic discharge
(ESD) are marked with the following label:
Figure 1: ESD label
When you handle components fitted with ESDs, you must observe the following
points under all circumstances:
●You must always discharge yourself of static charges (e.g. by touching a
grounded object) before working.
●The equipment and tools you use must be free of static charges.
●Remove the power plug from the power socket before inserting or removing
boards containing ESDs.
●Always hold boards with ESDs by their edges.
●Never touch pins or conductors on boards fitted with ESDs.
●Use a grounding cable designed for this purpose to connect yourself to the
system unit as you install/deinstall the board.
●Place all components on a static-safe base.
IYou will find a detailed description for handling ESD components in the
relevant European or international standards (EN 61340-5-1,
ANSI/ESD S20.20).

10 Technical Manual D2509 (TX200 S4)
CE Certificate Important notes
Notes about boards
●During installation/deinstallation of the system board, observe the specific
instructions described in the service manual for the server.
●Remove the plug from the mains outlet so that system and system board are
totally disconnected from the mains voltage.
●To prevent damage to the system board, the components and conductors on
it, please take great care when you insert or remove boards. Take great care
to ensure that extension boards are slotted in straight, without damaging
components or conductors on the system board, or any other components,
for example EMI spring contacts
●Be careful with the locking mechanisms (catches, centring pins etc.) when
you replace the system board or components on it, for example memory
modules or processors.
●Never use sharp objects (screwdrivers) for leverage.
2.2 CE Certificate
The shipped version of this board complies with the requirements
of the EEC directive 89/336/EEC "Electromagnetic compatibility".
Compliance was tested in a typical PRIMERGY configuration.

D2509 (TX200 S4) Technical Manual 11
Important notes Environmental Protection
2.3 Environmental Protection
Environmentally friendly product design and development
This product has been designed in accordance with standards for ”environmen-
tally friendly product design and development“. This means that the designers
have taken into account important criteria such as durability, selection of
materials and coding, emissions, packaging, the ease with which the product
can be dismantled and the extent to which it can be recycled.
This saves resources and thus reduces the harm done to the environment.
Notes on saving energy
Devices that do not have to be on permanently should not be switched on until
they need to be used and should be switched off during long breaks and on
completion of work.
Notes on packaging
Please do not throw away the packaging. We recommend that you do not throw
away the original packaging in case you need it later for transporting.
Notes on dealing with consumables
Please dispose batteries in accordance with local government regulations.
Do not throw batteries and accumulators into the household waste. They must
be disposed of in accordance with local regulations concerning special waste.
All batteries containing pollutants are marked with a symbol (a crossed-out
rubbish bin on wheels). In addition, the marking is provided with the chemical
symbol of the heavy metal decisive for the classification as a pollutant:
Cd Cadmium
Hg Mercury
Pb Lead
Notes on labeling plastic housing parts
Please avoid attaching your own labels to plastic housing parts wherever
possible, since this makes it difficult to recycle them.

12 Technical Manual D2509 (TX200 S4)
Environmental Protection Important notes
Returning, recycling and disposal
For details on returning and reuse of devices and consumables within Europe,
refer to the “Returning used devices” manual, or contact your Fujitsu Siemens
Computers branch office/subsidiary or our recycling centre in Paderborn:
Fujitsu Siemens Computers
Recycling Center
D-33106 Paderborn
Tel. [phone]
Fax [phone]
The device may not be disposed of with household rubbish. This
appliance is labelled in accordance with European Directive
2002/96/EC concerning used electrical and electronic appliances
(waste electrical and electronic equipment - WEEE).
The guideline determines the framework for the return and recycling
of used appliances as applicable throughout the EU. To return your
used device, please use the return and collection systems available
to you. You will find further information on this at www.fujitsu-
siemens.com/recycling.

D2509 (TX200 S4) Technical Manual 13
3 Features
3.1 Overview
Processors
– 1 or 2 Intel®Xeon™ processors with socket LGA771
– supported processors:
quad-core Intel®Xeon™ 5400 series
quad-core Intel®Xeon™ 5300 series
dual-core Intel®Xeon™ 5200 series
dual-core Intel®Xeon™ 5100 series
– 2x VRM 11.0 onboard (EVRD)
Main memory
– 6 slots for main memory FBD533/PC2-4200F or
FDB533/PC2-5300F Fully Buffered DIMM memory modules
with 512 MB, 1 Gbyte, 2 Gbyte and 4 Gbyte
– Maximum 24 Gbyte of memory (6 memory modules)
– Minimum 1 Gbyte (2 memory modules)
– Maximum 12.5 or 16 Gbyte/s bandwidth
– Supports 2 way interleaved memory subsystems (2 identical memory
modules have to installed at the same time)
– ECC multiple bit error detection and single bit error correction
– Memory scrubbing function
– Single Device Data Correction (SDDC) function (Chipkill™)
Chips on the system board
– Intel®5000Z chip set
– Single-channel Gigabit LAN controller (Broadcom 5708C)
– Service LAN controller (10/100 PHY SMSC 8700)
– Super I/O controller (SMSC 47M107)
– 1 MB Flash BIOS
– Server Management with FSC iRMC
– VGA controller integrated in iRMC
– 8MBx16 Flash for iRMC
– 512KBx16 SRAM for iRMC
– Thermal and system management controller (ADT7462)

14 Technical Manual D2509 (TX200 S4)
Overview Features
Internal connectors
– 1 floppy disk connector (34 pin)
– 1 IDE primary
–6SerialATA
–I
2C signaling connector
– SAS activity connector (HD LED)
– ATX power connector 24 pin (12V, -12V, 5V, 3.3V and 5V auxiliary)
– ATX power connector 8 pin (2x 12V)
– ATX power connector 4 pin (1x 12V)
– PC98 connector
– front panel
– dual USB type C (for USB port on front side)
– 2 USB connectors for optical drives
– 1 USB connector for internal USB stick
– 3 connectors for system fans (4 pin)
– 1 connector for system fan (5 pin)
– intrusion connector
– 1 RAID key
External connectors
– 2 serial ports (COM1, COM2)
– 1 parallel port (optional)
– 2 PS/2 interfaces for keyboard and mouse
– 2 USB 2.0 ports with 480 Mbits/s (rear side)
– 1 VGA port
– 2 RJ45 LAN ports
PCI slots
– 2 x PCI-X slots(64 bit / 133 MHz IOOPTM)
– 4 x PCI-Express slots, Gen1, mechanical PCIe x8; the slots can be switched
in different ways:
– 4x PCIe x4 slots (standard)
or
– 2x PCIe x4 slots and 1x PCIe x8 slot (optional)
or
– 2x PCIe x8 slots (optional)
– 1 x PCI slot 32 bit / 33 MHz)

D2509 (TX200 S4) Technical Manual 15
Features Overview
BIOS features
– Phoenix System-BIOS V 4.06
– Rompilot
– SMBIOS 2.4 (DMI)
– MultiProcessor Specification 1.4
– Server Hardware Design Guide 3.0
– WfM 2.0
– ACPI 2.0 support
– USB keyboard/mouse
– boot possible from:
– 120 MB floppy disk drive
– CD-ROM/DVD
– hard disk
–LAN
– console redirection support
– OEM logo
– CPU, memory disable
– hotspare memory support
Environmental protection
battery in holder
Form factor
SSI EEB Baseboard 304,8 x 330,2 mm (12 x 13 inch)
CSS (Customer Self Service)
This system board supports the CSS functionality. You will find a description of
CSS functionality in the operating manual of your server.

16 Technical Manual D2509 (TX200 S4)
Main memory Features
3.2 Main memory
The system board supports up to 16 Gbyte main memory. 6 slots (3 memory
banks with 2 modules) are available for the main memory. Each memory bank
can be populated with two 512 Mbyte, 1 Gbyte, 2 Gbyte or 4 Gbyte
FBD533/PC2-4200F or FDB667/PC2-5300F fully buffered DIMM memory
modules.
As in the basic configuration memory bank 1 is populated, the memory exten-
sions can be performed up to two times for memory bank 2 and 3.
ECC with memory scrubbing and with the Single Device Data Correction
(SDDC) function is supported.
IYou will find the descriptions how to install memory modules in the
Options Guide of your server.
Module population
Figure 2: Main memory
– The memory modules have to be based on x4 or x8 organized single or dual
ranked FBD533/PC2-4200F or FDB667/PC2-5300 fully buffered DIMM
modules and must be populated in pairs. It is only allowed you use memory
modules released by Fujitsu Siemens Computers.
– Each pair must consist of identical memory modules (2 way interleaved
mode).
– The module capacity between pairs can differ: pair 1A/1B can be populated
with two 512 Mbyte modules and pair 2A/2B with two 1 Gbyte modules.
DIMM-3B
DIMM-2B
DIMM-1B
DIMM-3A
DIMM-2A
DIMM-1A

D2509 (TX200 S4) Technical Manual 17
Features PCI slots
Following table shows the mandatory population order:
3.3 PCI slots
Figure 3: Mechanical PCI slots
module pair 1A/1B
(black)
module pair 2A/2B
(blue)
module pair 3A/3B
(blue)
populated empty empty
populated populated empty
populated populated populated
1
2
3
4
5
Slot 3
Slot 2
Slot 1
Slot 4
Slot 5
Slot 6
Slot 7
PCIe x8
PCI 32 Bit / 33 MHz
PCIe x8
PCIe x8
PCIe x8
PCI-X 64 Bit / 133 MHz IOOP
TM
PCI-X 64 Bit / 133 MHz IOOP
TM
6
7

18 Technical Manual D2509 (TX200 S4)
PCI slots Features
PCI slots
The following table shows an overview of the PCI slots:
IOOP™ (PCI bus speed optimization)
The hardware of the system board optimizes the PCI bus speed of the slots 4
and 5, depending on the slots’ population.
– the PCI bus speed is 133 MHz, if only one of the two slots (or no slot) is
populated.
– the PCI bus speed is 100 MHz for all other population variants for slot 4
and 5.
PCI, PCI-X, PCI Express interrupts
Each device connected to a PCI bus, a PCI-X bus or PCI Express can use up
to four interrupt signals depending on the functionality.
PCI and PCI-X buses use four lines named INTA to INTD, typically connected
to all devices on the bus in order to periodically balance interrupt load. An
interrupt signal may thereby be used simultaneously by multiple devices
(interrupt sharing).
PCI Express devices send their interrupts through messages. The interrupts are
defined by the system design.
PCI slot Type
mechanical
Function
1 PCIe x8 PCIe x4 or PCIe x8 slot (optional)
2 PCIe x8 PCIe x4 slot or not available if slot 1 x8
(optional)
3 PCI 32 32-bit PCI slot
4 PCI-X 64 64-bit PCI-X slot
133 MHz if only one card has been populated
in slot 4 or 5
100 MHz for population with 2 cards
5PCI-X64
6 PCIe x8 PCIe x4 or PCIe x8 slot (optional)
7 PCIe x8 PCIe x4 slot or not available if slot 6 x8
(optional)

D2509 (TX200 S4) Technical Manual 19
Features PCI slots
The following interrupt signals are used in the system:
Assignment of the PCI interrupts
If you select Auto in the BIOS setup, the interrupts are assigned automatically
and no further settings are required.
Slot/device Property Interrupt signal
VGA iRMC graphic PCI-INTA
LAN BCM5708c Single Channel PCI-INTB
Slot 7 PCIe x8 PCI_INTA, PCI_INTB,
PCI_INTC, PCI_INTD
Slot 6 PCIe x8 PCI_INTA, PCI_INTB,
PCI_INTC, PCI_INTD
Slot 5 PCI-X (133 MHz) PCI-X-INTC, PCI-X-INTD,
PCI-X-INTA, PCI-X-INTB
Slot 4 PCI-X (133 MHz) PCI-X-INTA, PCI-X-INTB,
PCI-X-INTC, PCI-X-INTD
Slot 3 PCI (33 MHz) PCI-INTC, PCI-INTD,
PCI-INTA, PCI-INTB
Slot 2 PCIe x8 PCI_INTA, PCI_INTB,
PCI_INTC, PCI_INTD
Slot 1 PCIe x8 PCI_INTA, PCI_INTB,
PCI_INTC, PCI_INTD

20 Technical Manual D2509 (TX200 S4)
Screen resolution Features
3.4 Screen resolution
Depending on the operating system used the screen resolutions in the following
table refer to the graphic controller on the system board. The graphic controller
is integrated in the iRMC (integrated Remote Management Controller).
If you are using an external graphic controller, you will find details of supported
screen resolutions in the operating manual or technical manual supplied with
the graphic controller.
3.5 Temperature / system monitoring
Temperature and system monitoring aim to reliably protect the computer
hardware against damage caused by overheating. In addition, any unnecessary
noise is also prevented by reducing the fan speed, and information is provided
about the system status.
The following functions are supported:
Temperature monitoring
Measurement of the processor and the system internal temperature by an
onboard temperature sensor, measurement of the ambient temperature by a
I2C temperature sensor.
Fan monitoring
The CPU, power supply unit and system fans are monitored. Fans that are no
longer available, blocked or sticky fans are detected.
Screen resolution Supported colors
640x480 8 bit, 16 bit, 24 bit
800x600 8 bit, 16 bit, 24 bit
1024x768 8 bit, 16 bit, 24 bit
1152x864 8 bit, 16 bit, 24 bit
1280x1024 8 bit, 16 bit, 24 bit
1600x1200 8 bit, 16 bit