Motorola CompactPCI CPN5365 Operating manual

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CompactPCI®CPN5365 Single Board
Computer and CPTM-01 Transition
Module
Installation and Use Guide
CPN5365A/IH3
September 2004 Edition

© Copyright 2004, 2003 Motorola, Inc.
All rights reserved.
Printed in the United States of America.
Motorola®and the Motorola symbol are registered trademarks of Motorola, Inc.
Intel®and the Intel logo are registered trademarks of Intel Corporation.
Pentium® is a registered trademark of Intel Corporation.
MMX™ and the MMX logo are trademarks of Intel Corporation.
CompactPCI® is a registered trademark of PCI Industrial Computer Manufacturers Group.
Phoenix® is a registered trademark of Phoenix Technologies Ltd.
All other products mentioned in this document are trademarks or registered trademarks of
their respective holders.

Safety Summary
The following general safety precautions must be observed during all phases of operation, service, and repair of this
equipment. Failure to comply with these precautions or with specific warnings elsewhere in this manual could result
in personal injury or damage to the equipment.
The safety precautions listed below represent warnings of certain dangers of which Motorola is aware. You, as the user
of the product, should follow these warnings and all other safety precautions necessary for the safe operation of the
equipment in your operating environment.
Ground the Instrument.
To minimize shock hazard, the equipment chassis and enclosure must be connected to an electrical ground. If the
equipment is supplied with a three-conductor AC power cable, the power cable must be plugged into an approved
three-contact electrical outlet, with the grounding wire (green/yellow) reliably connected to an electrical ground
(safety ground) at the power outlet. The power jack and mating plug of the power cable meet International
Electrotechnical Commission (IEC) safety standards and local electrical regulatory codes.
Do Not Operate in an Explosive Atmosphere.
Do not operate the equipment in any explosive atmosphere such as in the presence of flammable gases or fumes.
Operation of any electrical equipment in such an environment could result in an explosion and cause injury or damage.
Keep Away From Live Circuits Inside the Equipment.
Operating personnel must not remove equipment covers. Only Factory Authorized Service Personnel or other
qualified service personnel may remove equipment covers for internal subassembly or component replacement or any
internal adjustment. Service personnel should not replace components with power cable connected. Under certain
conditions, dangerous voltages may existeven with the power cable removed. To avoid injuries, such personnel should
always disconnect power and discharge circuits before touching components.
Use Caution When Exposing or Handling a CRT.
Breakage of a Cathode-Ray Tube (CRT) causes a high-velocity scattering of glass fragments (implosion). To prevent
CRT implosion, do not handle the CRT and avoid rough handling or jarring of the equipment. Handling of a CRT
should be done only by qualified service personnel using approved safety mask and gloves.
Do Not Substitute Parts or Modify Equipment.
Do not install substitute parts or perform any unauthorized modification of the equipment. Contact your local
Motorola representative for service and repair to ensure that all safety features are maintained.
Observe Warnings in Manual.
Warnings, such as the example below, precede potentially dangerous procedures throughout this manual. Instructions
contained in the warnings must be followed. You should also employ all other safety precautions which you deem
necessary for the operation of the equipment in your operating environment.
Warning
To prevent serious injury or death from dangerous voltages, use extreme
caution when handling, testing, and adjusting this equipment and its
components.

Flammability
All Motorola PWBs (printed wiring boards) are manufactured with a flammability rating
of 94V-0 by UL-recognized manufacturers.
EMI Caution
!
Caution
This equipment generates, uses and can radiate electromagnetic energy. It
may cause or be susceptible to electromagnetic interference (EMI) if not
installed and used with adequate EMI protection.Lithium Battery Caution
This product contains a lithium battery to power the clock and calendar circuitry.
!
Caution
Danger ofexplosion ifbattery isreplaced incorrectly. Replacebattery only
with the same or equivalent type recommended by the equipment
manufacturer. Dispose of used batteries according to the manufacturer’s
instructions.
Attention
!Il y a danger d’explosion s’il y a remplacement incorrect de la batterie.
Remplacer uniquement avec une batterie du même type ou d’un type
équivalent recommandé par le constructeur. Mettre au rebut les batteries
usagées conformément aux instructions du fabricant.
Vorsicht
!Explosionsgefahr bei unsachgemäßem Austausch der Batterie. Ersatz nur
durch denselben oder einen vom Hersteller empfohlenen Typ. Entsorgung
gebrauchter Batterien nach Angaben des Herstellers.

CE Notice (European Community)
!
Warning
This is a Class A product. In a domestic environment, this product may
cause radio interference, in which case the user may be required to take
adequate measures.
Motorola Computer Group products with the CE marking comply with the EMC Directive
(89/336/EEC). Compliance with this directive implies conformity to the following
European Norms:
EN55022 “Limits and Methods of Measurement of Radio Interference Characteristics
of Information Technology Equipment”; this product tested to Equipment Class A
EN55024“Informationtechnologyequipment—Immunitycharacteristics—Limitsand
methods of measurement”
Board products are tested in a representative system to show compliance with the above
mentioned requirements. A proper installation in a CE-marked system will maintain the
required EMC performance.
In accordance with European Community directives, a “Declaration of Conformity” has
been made and is available on request. Please contact your sales representative.
Notice
While reasonable efforts have been made to assure the accuracy of this document,
Motorola, Inc. assumes no liability resulting from any omissions in this document, or from
the use of the information obtained therein. Motorola reserves the right to revise this
document and to make changes from time to time in the content hereof without obligation
of Motorola to notify any person of such revision or changes.
Electronic versions of this material may be read online, downloaded for personal use, or
referenced in another document as a URL to the Motorola Computer Group website. The
text itself may not be published commercially in print or electronic form, edited, translated,
or otherwise altered without the permission of Motorola, Inc.
It is possible that this publication may contain reference to or information about Motorola
products (machines and programs), programming, or services that are not available in your
country. Such references or information must not be construed to mean that Motorola
intends to announce such Motorola products, programming, or services in your country.

Limited and Restricted Rights Legend
If the documentation contained herein is supplied, directly or indirectly, to the U.S.
Government, the following notice shall apply unless otherwise agreed to in writing by
Motorola, Inc.
Use, duplication, or disclosure by the Government is subject to restrictions as set forth in
subparagraph (b)(3) of the Rights in Technical Data clause at DFARS 252.227-7013 (Nov.
1995) and of the Rights in Noncommercial Computer Software and Documentation clause
at DFARS 252.227-7014 (Jun. 1995).
Motorola, Inc.
Embedded Communications Computing Group
2900 South Diablo Way
Tempe, Arizona 85282

vii
Contents
About This Manual
Comments and Suggestions.......................................................................................xix
Conventions Used in This Manual.............................................................................xix
CHAPTER 1 Hardware Preparation and Installation
Unpacking Instructions..............................................................................................1-1
Antistatic Precautions ................................................................................................1-2
Equipment Required ..................................................................................................1-3
Overview of Startup Procedures................................................................................1-3
Introduction................................................................................................................1-4
Features......................................................................................................................1-4
Input/Output Interfaces..............................................................................................1-5
Front Panel Connectors, Switches, and Indicators.....................................................1-6
CPN5365 On-Board Components..............................................................................1-8
Installing Memory Modules, PMCs, and Drives .....................................................1-10
Mounting Memory Mezzanine Modules ..........................................................1-10
Mounting PCI Mezzanine Cards.......................................................................1-11
Mounting the Slim Line EIDE Hard Drive.......................................................1-12
Connecting Devices to Board Connectors...............................................................1-13
Hardware Configuration ..........................................................................................1-13
Before You Install or Remove a Board....................................................................1-14
Observe ESD Precautions.................................................................................1-14
Watch for Bent Pins or Other Damage .............................................................1-14
Use Caution When Installing or Removing Boards..........................................1-15
Preserve EMI Compliance................................................................................1-15
Understand Hot Swap.......................................................................................1-15
Recognize Different Injector/Ejector Lever Types...........................................1-16
Verify Slot Usage..............................................................................................1-17
Installing a Module ..................................................................................................1-18
Removing a Hot-Swap Module ...............................................................................1-20
Replacing Lithium Batteries ....................................................................................1-22

viii
CHAPTER 2 Installing the CPTM-01
Transition Module On-Board Components and Rear Panel Connectors...................2-1
Antistatic Precautions.........................................................................................2-3
Installing the CPTM-01 Transition Module ..............................................................2-3
CPTM-01 Transition Module Connectors ................................................................. 2-7
Rear I/O Connectors (J3, J4, and J5)..................................................................2-7
PMC I/O Connectors........................................................................................2-13
Ethernet Connectors .........................................................................................2-14
Serial Port Connectors......................................................................................2-15
Video Connector ..............................................................................................2-16
Keyboard/Mouse P/S2 Connector ...................................................................2-16
Universal Serial Bus Connectors .....................................................................2-17
Parallel Connector ...........................................................................................2-17
EIDE Connector ..............................................................................................2-19
CompactFlash Connector ................................................................................2-20
Floppy Connector.............................................................................................2-22
Indicator LED/Miscellaneous Connector ........................................................2-23
CHAPTER 3 Starting Up the CPN5365
Applying Power to the System..................................................................................3-1
Switches and Indicators.............................................................................................3-1
CHAPTER 4 Functional Description
Peripheral Component Interconnect (PCI) Local Bus Interface................................4-2
CompactPCI Bus Interface........................................................................................4-2
Intel 21555 Non Transparent PCI-to-PCI Bridge......................................................4-3
CPN5365 in a Nonhost Slot.......................................................................................4-3
Peripheral Reset Function ..................................................................................4-4
Peripheral PCI Interrupt Function......................................................................4-4
Peripheral PCI Clock Function...........................................................................4-5
Peripheral Hot Swap Function ...........................................................................4-5
Field Programmable Gate Array Registers................................................................4-6
Watchdog Timer ........................................................................................................4-6
Jump to User Code in Alternate Flash Bank .............................................................4-7
Desktop Management Interface.................................................................................4-7
PhoenixBIOS Description .........................................................................................4-8
Soft Reset ...........................................................................................................4-8
Headless Operation.............................................................................................4-9

ix
Remote Setup......................................................................................................4-9
Network Boot......................................................................................................4-9
Temperature and Voltage Monitoring on the Board and Processor .........................4-11
CHAPTER 5 Connector Pin Assignments
CPN5365 Single Board Computer Connectors..........................................................5-1
CompactPCI Bus Connectors (J1 and J2)..................................................................5-1
CompactPCI Rear I/O Connectors (J3, J4, and J5).............................................5-4
PCI Mezzanine Card Connectors......................................................................5-11
64 Bit Extension on the PMC Connectors........................................................5-14
PCI Mezzanine Card 1 and 2 I/O......................................................................5-15
Memory Mezzanine Connector (J16)...............................................................5-17
Ethernet Connectors.................................................................................................5-20
Serial Port Connectors .............................................................................................5-20
On-board Video Connector (J7) ..............................................................................5-21
Debug Connector (J10)............................................................................................5-21
APPENDIX A Specifications
APPENDIX B Thermal Analysis
Thermally Significant Components..........................................................................B-1
Component Temperature Measurement....................................................................B-5
Preparation.........................................................................................................B-5
Measuring Junction Temperature.......................................................................B-5
Measuring Case Temperature ............................................................................B-5
Measuring Local Air Temperature.....................................................................B-8
APPENDIX C Related Documentation
Motorola Computer Group Documents ....................................................................C-1
Related Specifications...............................................................................................C-4

xi
List of Figures
Figure 1-1. Front Panel Connectors, Reset Switch, and LEDs..................................1-7
Figure 1-2. Location of On-Board Components........................................................1-8
Figure 1-3. Injector/Ejector Lever Types.................................................................1-16
Figure 2-1. CPTM-01 Components and Rear Panel Connectors...............................2-2
Figure 3-1. Location of the Debug LEDs, CPN5365 Secondary Side.......................3-2
Figure 4-1. Block Diagram of CPN5365...................................................................4-1
Figure B-1. Location of Thermally Significant Components on the Primary Side .B-3
Figure B-2. Location of Thermally Significant Components on the Secondary Side B-4
Figure B-3. Mounting a Thermocouple Under a Heatsink ......................................B-7
Figure B-4. Measuring Local Air Temperature .......................................................B-8

xiii
List of Tables
Table 1-1. Input/Output Interfaces on the CPN5365 and the CPTM-01....................1-5
Table 1-2. List of Front Panel Connectors and On-Board Components....................1-9
Table 1-3. Slot Usage Indicators..............................................................................1-17
Table 2-1. Front Panel and On-Board Connectors and Components for the CPTM-012-1
Table 2-2. CPTM-01 Rear I/O Connector (J3)...........................................................2-7
Table 2-3. Signal Descriptions for CPTM-01 Rear I/O .............................................2-8
Table 2-4. CPTM-01 Rear I/O Connector (J4)...........................................................2-8
Table 2-5. Signal Descriptions for the CPTM-01 Backplane Connector (J4)..........2-10
Table 2-6. CPTM-01 Rear I/O Connector (J5).........................................................2-11
Table 2-7. Signal Descriptions for the CPTM-01 Backplane Connector (J5...........2-12
Table 2-8. PMC 1 and 2 I/O Connectors (J14, J10).................................................2-13
Table 2-9. CPTM-01 Ethernet Connectors (J18) and (J13) .....................................2-14
Table 2-10. CPTM-01 Serial Port Connector (J28)..................................................2-15
Table 2-11. CPTM-01 Serial Port Connector COM1 (J21)......................................2-15
Table 2-12. CPTM-01 Video Connector (J16).........................................................2-16
Table 2-13. CPTM-01 Keyboard/Mouse Connector (J27).......................................2-16
Table 2-14. CPTM-01 USB Connector (J19)...........................................................2-17
Table 2-15. CPTM-01 Parallel Connector (J20) ......................................................2-17
Table 2-16. CPTM-01 Secondary IDE Connector (J26)..........................................2-19
Table 2-17. CPTM-01 CompactFlash Connector (J25) ...........................................2-20
Table 2-18. CPTM-01 Floppy Connector (J9).........................................................2-22
Table 2-19. CPTM-01 Drive LEDs/Reset Connector (J2).......................................2-23
Table 5-1. CPN5365 Backplane Connector (J1)........................................................5-1
Table 5-2. CPN5365 Backplane Connector (J2)........................................................5-2
Table 5-3. CPN5365 Rear I/O Connector (J3)...........................................................5-4
Table 5-4. Signal Descriptions for Backplane Connector (J3)...................................5-4
Table 5-5. CPN5365 Rear I/O Connector (J4)...........................................................5-6
Table 5-6. Signal Descriptions for the Backplane Connector (J4).............................5-7
Table 5-7. CPN5365 Rear I/O Connector (J5)...........................................................5-8
Table 5-8. Signal Descriptions for the Backplane Connector (J5).............................5-9
Table 5-9. PMC 1 and 2 Connectors (J11, J21) .......................................................5-11
Table 5-10. PMC 1 and 2 Connectors (J12, J22).....................................................5-12
Table 5-11. PMC 1 and 2 Connectors (J13, J23) .....................................................5-14
Table 5-12. PMC 1 and 2 I/O Connectors (J14, J24)...............................................5-15

xiv
Table 5-13. Memory Mezzanine Connector (J16)...................................................5-17
Table 5-14. Ethernet Connector Pin Assignments for CPN5365 (J9).....................5-20
Table 5-15. CPN5365 Serial Port Connector Pin Assignments RJ45 (J8)..............5-20
Table 5-16. On-board Video Connector (J7) ...........................................................5-21
Table 5-17. Debug Connector (J10) ........................................................................5-21
Table A-1. Physical Characteristics of the CPN5365 Single Board Computer .......A-1
Table A-2. Environmental Specifications 1 ............................................................A-1
Table A-3. Power Input Requirements for the CPN5365 and CPTM-01 ................A-2
Table A-4. Lithium Battery Specifications ..............................................................A-2
Table B-1. Thermally Significant Components ....................................................... B-2
Table C-1. Motorola Computer Group Documents ................................................. C-1
Table C-2. Manufacturers’ Documents ................................................................... C-2
Table C-3. Related Specifications ........................................................................... C-4

xv

xvii
About This Manual
This CompactPCI®CPN5365 Single Board Computer Installation and
Use Guide describes the installation, components, and configurations of
the CPN5365 Single Board Computer and CPTM-01 Rear Transition
Module. Use this guide for general and technical information about the
CPN5365 Single Board Computer.
Summary of Changes
This table summarizes revisions to this manual.
Model Numbers Description
CPN5365-700-01 700 MHz Pentium III, 512MB ECC, 2 PMCs, I/O on J4
CPN5365-700-02 700 MHz Pentium III, 512MB ECC, 1 PMC, 1 HD site, I/O on J4
CPN5365-700-03 700 MHz Pentium III, 512MB ECC, 2 PMCs, no J4
CPN5365-700-04 700 MHz Pentium III, 512MB ECC, 1 PMC, 1 HD site, no J4
CPTM-01 CompactPCI Rear Transition Module with 1 or 2 PIM sites,
keyboard/mouse, USB, CompactFlash, EIDE, floppy, serial, parallel
Ethernet, video
Date Change
September 2004 Updated model numbers to reflect new configurations.
May 2003 Revised the Remote Setup on page 4-9 to reflect correct default BIOS
settings.
Revised Table 5-3 and Table 2-2.

xviii
Overview of Contents
This section contains a short description of the content of each chapter and
appendix in this manual.
Chapter 1, Hardware Preparation and Installation, describes thefeatures,
configuration, basic preparation and installation of the memory
mezzanine, PMCs, and the CPN5365.
Chapter 2, Installing the CPTM-01, describes the features, functions, and
installation of the rear transition module. Pin assignments for the RTM are
at the end of this chapter.
Chapter 3, Starting Up the CPN5365, provides information about the
power-up procedure, switches, and indicators on the single board
computer.
Chapter 4, Functional Description, provides brief descriptions about the
processor, PCI bus, host and nonhost slot mounting, WDT, resets, clock
functions and a general description of the CPN5365 on a block diagram
level. This chapter also includes information about the PhoenixBIOS.
Chapter 5, Connector Pin Assignments, contains the pin assignments for
the CPN5365 base board.
Appendix A, Specifications, provides physical and mechanical board
specifications.
Appendix C, Thermal Analysis, provides information about thermally
significant components on the single board computer.
Appendix C, Related Documentation, lists related Motorola Computer
Group documents, manufacturer’s documents, and specifications and
provides the URLs for this information.
Who Should Use This Guide
The information in this guide is written for system installers, original
equipmentmanufacturers (OEM) and technicians. Theprocedures assume
familiarity with the safety practices and regulatory compliance required

xix
for using and modifying electronic equipment. Personnel who install
CompactPCI systems should be trained and experienced with the
installation of computers and computer equipment.
Comments and Suggestions
Motorola welcomes and appreciates your comments on its documentation.
We want to know what you think about our manuals and how we can make
them better. Mail comments to:
Embedded Communications Computing Group
Reader Comments DW164
2900 S. Diablo Way
Tempe, Arizona 85282
You can also submit comments to the following e-mail address:
[e-mail]
In all your correspondence, please list your name, position, and company.
Be sure to include the title and part number of the manual and tell how you
used it. Then tell us your feelings about its strengths and weaknesses and
any recommendations for improvements.
Conventions Used in This Manual
The following typographical conventions are used in this document:
bold
is used for user input that you type just as it appears; it is also used for
commands, options and arguments to commands, and names of
programs, directories and files.
italic
is used for names of variables to which you assign values. Italic is also
used for comments in screen displays and examples, and to introduce
new terms.