Fujitsu PRIMERGY RX900 S2 User manual

Operating Manual - English
PRIMERGY RX900 S2 Server
Operating Manual
Edition June 2011

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Copyright © 2011 Fujitsu Technology Solutions GmbH.
All rights reserved.
Delivery subject to availability; right of technical modifications reserved.
All hardware and software names used are trademarks of their respective manufacturers.
– The contents of this manual may be revised without prior notice.
– Fujitsu assumes no liability for damages to third party copyrights or other rights arising from
the use of any information in this manual.
– No part of this manual may be reproduced in any form without the prior written permission
of Fujitsu.
Microsoft, Windows, Windows Server, and Hyper V are trademarks or registered trademarks of
Microsoft Corporation in the USA and other countries.
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in the USA and other countries.

RX900 S2 Operating Manual
Before reading this manual
For your safety
This manual contains important information for safely and correctly using this
product.
Carefully read the manual before using this product. Pay particular attention to
the accompanying manual "Safety Notes and Regulations" and ensure these
safety notes are understood before using the product. Keep this manual and the
manual "Safety Notes and Regulations" in a safe place for easy reference while
using this product.
Radio interference
This product is a "Class A" ITE (Information Technology Equipment). In a
domestic environment this product may cause radio interference, in which case
the user may be required to take appropriate measures. VCCI-A
Aluminum electrolytic capacitors
The aluminum electrolytic capacitors used in the product's printed circuit board
assemblies and in the mouse and keyboard are limited-life components. Use of
these components beyond their operating life may result in electrolyte leakage
or depletion, potentially causing emission of foul odor or smoke.
As a guideline, in a normal office environment (25°C) operating life is not
expected to be reached within the maintenance support period (5 years).
However, operating life may be reached more quickly if, for example, the
product is used in a hot environment. The customer shall bear the cost of
replacing replaceable components which have exceeded their operating life.
Note that these are only guidelines, and do not constitute a guarantee of
trouble-free operation during the maintenance support period.
High safety use
This product has been designed and manufactured to be used in commercial
and/or industrial areas as a server.
When used as visual display workplace, it must not be placed in the direct field
of view to avoid incommoding reflections (applies only to TX server systems).
The device has not been designed or manufactured for uses which demand an
extremely high level of safety and carry a direct and serious risk of life or body
if such safety cannot be assured.

Operating Manual RX900 S2
These uses include control of nuclear reactions in nuclear power plants,
automatic airplane flight control, air traffic control, traffic control in mass
transport systems, medical devices for life support, and missile guidance
control in weapons systems (hereafter, "high safety use"). Customers should
not use this product for high safety use unless measures are in place for
ensuring the level of safety demanded of such use. Please consult the sales
staff of Fujitsu if intending to use this product for high safety use.
Measures against momentary voltage drop
This product may be affected by a momentary voltage drop in the power supply
caused by lightning. To prevent a momentary voltage drop, use of an AC
uninterruptible power supply is recommended.
(This notice follows the guidelines of Voltage Dip Immunity of Personal
Computer issued by JEITA, the Japan Electronics and Information Technology
Industries Association.)
Technology controlled by the Foreign Exchange and Foreign Trade
Control Law of Japan
Documents produced by Fujitsu may contain technology controlled by the
Foreign Exchange and Foreign Trade Control Law of Japan. Documents which
contain such technology should not be exported from Japan or transferred to
non-residents of Japan without first obtaining authorization in accordance with
the above law.
Harmonic Current Standards
This product conforms to harmonic current standard JIS C 61000-3-2.
Only for the Japanese market: About SATA hard disk drives
The SATA version of this server supports hard disk drives with SATA / BC-SATA
storage interfaces. Please note that the usage and operation conditions differ
depending on the type of hard disk drive used.
Please refer to the following internet address for further information on the
usage and operation conditions of each available type of hard disk drive:
http://primeserver.fujitsu.com/primergy/harddisk/

RX900 S2 Operating Manual
Only for the Japanese market:
IAlthough described in this manual, some sections do not apply to the
Japanese market. These options and routines include:
– CSS (Customer Self Service)
– USB Flash Module (UFM)
– Replacing the lithium battery

Operating Manual RX900 S2

RX900 S2 Operating Manual
Content
1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
1.1 Concept and target groups for this manual . . . . . . . . . 12
1.2 Documentation overview . . . . . . . . . . . . . . . . . . . 12
1.3 Notational conventions . . . . . . . . . . . . . . . . . . . . 14
2 Functional overview . . . . . . . . . . . . . . . . . . . . . . 15
2.1 Features . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15
2.2 Expansions and conversions . . . . . . . . . . . . . . . . . 23
2.2.1 CPU Memory Riser (CPUMEMR) . . . . . . . . . . . . . . . . 24
2.2.2 Expansion cards in PCIe slots . . . . . . . . . . . . . . . . . . 25
2.2.3 Hard disk drives and solid state drives . . . . . . . . . . . . . 27
2.2.4 SAS RAID controllers an BBUs . . . . . . . . . . . . . . . . . 27
2.2.5 Trusted Platform Module (TPM) . . . . . . . . . . . . . . . . . 28
2.2.6 USB Flash Module (UFM) . . . . . . . . . . . . . . . . . . . . 28
2.2.7 Accessible drives . . . . . . . . . . . . . . . . . . . . . . . . 28
2.2.8 Power Supply Units (PSUs) . . . . . . . . . . . . . . . . . . . 29
2.3 Server specification . . . . . . . . . . . . . . . . . . . . . . 30
3 Overview of the installation steps . . . . . . . . . . . . . . . 37
4 Important information . . . . . . . . . . . . . . . . . . . . . 39
4.1 Safety instructions . . . . . . . . . . . . . . . . . . . . . . . 39
4.2 CE conformity . . . . . . . . . . . . . . . . . . . . . . . . . 47
4.3 FCC Class A Compliance Statement . . . . . . . . . . . . . 48
4.4 Transporting the server . . . . . . . . . . . . . . . . . . . . 49
4.5 Notes on installing the server in the rack . . . . . . . . . . . 50
4.6 Environmental protection . . . . . . . . . . . . . . . . . . . 51

Operating Manual RX900 S2
Content
5 Hardware installation . . . . . . . . . . . . . . . . . . . . . . 53
5.1 Unpacking the server . . . . . . . . . . . . . . . . . . . . . . 54
5.2 Installing/removing the server in/from the rack . . . . . . . . 55
5.2.1 Rack system requirements . . . . . . . . . . . . . . . . . . . . 55
5.2.2 Installation in PRIMECENTER/DataCenter rack . . . . . . . . . 59
5.2.3 Installation in 3rd party racks . . . . . . . . . . . . . . . . . . . 67
5.3 Connecting devices to the server . . . . . . . . . . . . . . . 69
5.4 Connecting the server to the mains . . . . . . . . . . . . . . 71
5.4.1 Connecting the power cord . . . . . . . . . . . . . . . . . . . . 74
5.5 Notes on connecting/disconnecting cables . . . . . . . . . . 75
6 Starting up and operation . . . . . . . . . . . . . . . . . . . . 77
6.1 Control elements and indicators . . . . . . . . . . . . . . . . 77
6.1.1 Front of server . . . . . . . . . . . . . . . . . . . . . . . . . . 77
6.1.1.1 ID card . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 78
6.1.1.2 Control elements . . . . . . . . . . . . . . . . . . . . . . . 78
6.1.1.3 Indicators on the control panel . . . . . . . . . . . . . . . . 79
6.1.1.4 Indicators on the accessible drives/components . . . . . . . 81
6.1.1.5 Indicators on the hot-plug HDD/SSD modules . . . . . . . . 82
6.1.2 Rear of server . . . . . . . . . . . . . . . . . . . . . . . . . . . 83
6.1.2.1 Global Error indicator and CSS indicator . . . . . . . . . . . 83
6.1.2.2 LAN indicators . . . . . . . . . . . . . . . . . . . . . . . . . 85
6.1.2.3 Indicators on the hot-plug power supply units . . . . . . . . . 87
6.2 Switching the server on and off . . . . . . . . . . . . . . . . 88
6.3 Configuring the server . . . . . . . . . . . . . . . . . . . . . 91
6.3.1 Configuring the SAS RAID controller . . . . . . . . . . . . . . . 91
6.3.2 Configuring the server and installing the operating system with the
ServerView Installation Manager . . . . . . . . . . . . . . . . . 92
6.3.3 Configuring the server and installing the operating system without the
ServerView Installation Manager . . . . . . . . . . . . . . . . . 93
6.4 Cleaning the server . . . . . . . . . . . . . . . . . . . . . . . 94
7 Property and data protection . . . . . . . . . . . . . . . . . . 95
7.1 Mechanical access protection . . . . . . . . . . . . . . . . . 95

RX900 S2 Operating Manual
Conten
t
7.2 BIOS Setup security functions . . . . . . . . . . . . . . . . 95
8 Troubleshooting and tips . . . . . . . . . . . . . . . . . . . 97
8.1 Power-on indicator remains unlit . . . . . . . . . . . . . . . 97
8.2 Server switches itself off . . . . . . . . . . . . . . . . . . . . 98
8.3 Screen remains blank . . . . . . . . . . . . . . . . . . . . . 98
8.4 Flickering stripes on monitor screen . . . . . . . . . . . . . 99
8.5 No screen display or display drifts . . . . . . . . . . . . . . 99
8.6 Incorrect date and time . . . . . . . . . . . . . . . . . . . . 100
8.7 Drives reported as "dead" when starting system . . . . . . 100
8.8 Added drive reported as defective . . . . . . . . . . . . . . 101
8.9 Error message on screen . . . . . . . . . . . . . . . . . . . 101
9 CSS components . . . . . . . . . . . . . . . . . . . . . . . . 103
9.1 Hot-plug power supply units . . . . . . . . . . . . . . . . . 105
9.2 Hot-plug fans . . . . . . . . . . . . . . . . . . . . . . . . . . 106
9.3 Hot-plug HDD/SSD modules . . . . . . . . . . . . . . . . . . 106
9.3.1 Handling HDD and SSD memory modules . . . . . . . . . . . 108
9.3.2 HDD/SSD module and dummy module . . . . . . . . . . . . . 109
Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 111

Operating Manual RX900 S2
Content

RX900 S2 Operating Manual 11
1 Introduction
In the PRIMERGY RX900 S2, the Intel QPI architecture in PRIMERGY x86
systems is used for the first time in combination with 8-socket scalability and the
new Intel E7 8800 Xeon processor series with up to 10 cores per CPU. The
result is a new scale-up server, that sets a new performance reach achievable
with x86 rack server technology.
The RX900 S2 provides linear scalability by simultaneously expanding I/O
capacity, memory capacity and CPU performance, once upgrading the system
with combined CPU/Memory boards. The CPU performance will scale up in line
with additional 16 memory slots per configurable board resulting in 4 TB RAM,
with availability of 32 GB memory modules. With Intel QPI link technology, a
fully populated 8 CPU system will have 4 activated I/O hubs, providing
aggregated peak I/O bandwidth of more than 100 GByte/s. The two onboard 10
Gigabit Ethernet controllers plus 6 x 1000 baseT onboard Ethernet ports ensure
ample IP network bandwidth from the very start.
Linear scaleability is beneficial for very large corporate databases (Oracle,
Microsoft SQL Server, MySQL, DB2 and other) and heavy load transactional
processing applications where response time and throughput is paramount.
Likewise, corporate SAP/ERP, Decision Support services and Business
Intelligence solutions are centralized mission critical workloads, where
"performance for time-to-results" constitutes the business critical value.
By supporting the leading enterprise virtualization suites such as VMware,
Hyper-V and Xen, the RX900 S2 server enables for large scale consolidation of
virtual servers to a central point. In other words, many "big VMs" can be running
without performance barriers such as mission critical VDI consolidation.
Thanks to its highly developed hardware and software components, the server
offers a high level of data security and availability. These include hot-plug
HDD/SSD modules, hot-plug system fans, hot-plug power supply units, the
Server Management ServerView Suite, Prefailure Detection and Analysis
(PDA), and Automatic Server Reconfiguration and Restart (ASR&R).Security
functions in the BIOS Setup and on the baseboard protect the data on the
server against manipulation.The server occupies 8 height units (HU) in the rack.

12 Operating Manual RX900 S2
Introduction
1.1 Concept and target groups for this manual
This operating manual describes how to install, set up and operate your server.
This operating manual is intended for those responsible for installing the
hardware and ensuring that the system runs smoothly. It contains all the
information you need to put your PRIMERGY RX900 S2 into operation.
To understand the various expansion options, you will need to be familiar with
the fields of hardware and data transmission and you will require a basic
knowledge of the underlying operating system.
While the Operating manual provides information needed for installing the
server and for daily tasks assuming that the server is operating normally, the
"PRIMERGY RX900 S2 Server Upgrade and Maintenance Manual" provides
information on maintenance procedures to bring the system back to normal
operation.
1.2 Documentation overview
More information on your PRIMERGY RX900 S2 can be found in the following
documents:
– "Quick Start Hardware - PRIMERGY RX900 S2" leaflet
"はじめにお読みください-PRIMERGY RX900 S2" for the Japanese market
(only included as a printed copy)
– "Quick Start Software - Quick Installation Guide" DVD booklet
(only included with the ServerView Suite as a printed copy) except for the
Japanese market
– "Safety Notes and Regulations" manual
"安全上の注意およびその他の重要情報 " for the Japanese market
– "Warranty" manual
"保証書 " for the Japanese market
– "ServerView Suite Local Service Concept - LSC" manual
– "Returning used devices" manual and "Service Desk" leaflet
"サポート＆サービス " for the Japanese market
– "PRIMERGY RX900 S2 Server Operating Manual"
– "PRIMERGY RX900 S2 Server Upgrade and Maintenance Manual"

RX900 S2 Operating Manual 13
Introduction
– "Baseboard D3144, CPUMEMR D3145, PCIR D3046 for PRIMERGY
RX900 S2 Technical Manual"
– "D3144 BIOS Setup Utility for PRIMERGYRX900 S2" manual
IPRIMERGY manuals are available in PDF format on the
ServerView Suite DVD 2. The ServerView Suite DVD 2 is part of the
ServerView Suite supplied with every server.
If you no longer have the ServerView Suite DVDs, you can obtain the
relevant current versions using the order number U15000-C289 (the
order number for the Japanese market: please refer to the configurator
of the server http://primeserver.fujitsu.com/primergy/system/).
The PDF files of the manuals can also be downloaded free of charge
from the Internet. The overview page showing the online documentation
available on the Internet can be found using the URL (for EMEA market):
http://manuals.ts.fujitsu.com. The PRIMERGY server documentation can
be accessed using the Industry standard servers navigation option.
For the Japanese market:
Please use the following URL to find the latest manual of the product.
http://primeserver.fujitsu.com/primergy/manual/
Other remarks that have not been described in the manual might be
published under the following URL.
Please refer to the following URL before using the product.
http://primeserver.fujitsu.com/primergy/products/note
Further sources of information:
– PRIMERGY Abbreviations and Glossary on the ServerView Suite DVD 2
– Manual for the monitor
– Documentation for the boards and drives
– Operating system documentation
– Information files in your operating system

14 Operating Manual RX900 S2
Introduction
1.3 Notational conventions
The following notational conventions are used in this manual:
Text in italics indicates commands or menu items.
"Quotation marks" indicate names of chapters and terms that are being
emphasized.
Êdescribes activities that must be performed in the order
shown.
VCAUTION! pay particular attention to texts marked with this symbol.
Failure to observe this warning may endanger your life,
destroy the system or lead to the loss of data.
Iindicates additional information, notes and tips.

RX900 S2 Operating Manual 15
2 Functional overview
This section provides information on the features and technical data of the
RX900 S2 server, that is the combination of the baseboard and additional
components/devices. For information on key characteristics and board layout of
the baseboard, see "Baseboard D3144, CPUMEMR D3145, PCIR D3146 for
PRIMERGY RX900 S2 Technical Manual".
2.1 Features
Customer Self Service (CSS)
The PRIMERGY Customer Self Service (CSS) concept enables an comfortable
identification and replacement of the affected component in the event of certain
error scenarios.
In the RX900 S2, the following components are included in the CSS concept:
●Hot-plug hard disk drives
●Hot-plug power supply units
●Hot-plug system fans
For additional information on CSS components, see chapter "CSS components"
on page 103. For information on how to install and replace CSS components,
see "PRIMERGY RX900 S2 Server Upgrade and Maintenance Manual".
CSS indicators on the control panel and on the back of the PRIMERGY server
provide you with information if a CSS event arises. For more information on the
behavior of these indicators, see chapter "Control elements and indicators" on
page 77 and the "ServerView Suite Local Service Concept - LSC" manual on
the ServerView Suite DVD 2.
Your server is equipped with a ServerView Local Service Display, which enables
you to identify the type of component affected by the error directly on the server.
For more information, see the "ServerView Suite Local Service Concept - LSC"
manual on the ServerView Suite DVD 2.
In addition, CSS errors are displayed in the ServerView Operations Manager,
the server management software from Fujitsu.

16 Operating Manual RX900 S2
Functional overview
In the event of errors, the ServerView Operations Manager refers you directly
to the affected component and its order information in the Illustrated Spares
catalog of the server in question. (This feature is not available for the Japanese
market.)
Baseboard D3144, CPU Memory Riser D3145, PCI Riser D3046
The basic elements of the RX900 S2 server are the Baseboard D3144, 4 to 8
CPU Memory Risers (CPUMEMR) D3145, and the PCI Riser (PCIR) D3146.
Their hardware and BIOS features are described in the "Baseboard D3144,
CPUMEMR D3145, PCIR D3146 for PRIMERGY RX900 S2 Technical Manual"
and in the "D3144 BIOS Setup Utility for PRIMERGY RX900 S2" manual.
PCIe slot configuration
The server comprises 16 PCI Express (PCIe) slots. Seven PCIe slots are
located on the PCI Riser, nine on the baseboard. Four of the PCIe slots on the
baseboard are PCIe hot-plug slots. An additional tenth PCIe slot on the
baseboard is reserved for the Modular RAID controller.
Hard disk and solid state drives
The server can be equipped with up to 8 HDD/SSD modules. Each HDD/SSD
module can accommodate a SAS/SATA hard disk drive or solid state drive with
a 2.5-inch format. The modules are connected to the SAS backplane wirelessly.
This allows HDD/SSD modules to be plugged in or pulled out easily.
The hard disk system is designed for SAS/SATA with one channel for each hard
disk drive/solid state drive.
The server has RAID configuration and HDD/SSD modules can be replaced
during operation, see "PRIMERGY RX900 S2 Server Upgrade and
Maintenance Manual".
SAS RAID controller
The SAS RAID controller for operating up to eight SAS/SATA hard disk drives
or solid state drives supports the RAID levels 0, 1, E1, 5, 6, 10, 50, and 60.

RX900 S2 Operating Manual 17
Functional overview
Battery Backup Units
The Battery Backup Unit (BBU) backs up the memory contents of the SAS RAID
controller in the event of a power failure. A maximum of two BBUs can be
installed for each system.
IThe RX900 S2 server can be equipped with one Modular RAID controller
and two SAS RAID controllers but only for two of these RAID controllers
a BBU can be installed.
Accessible drives
One optical drive is installed in the RX900 S2 server. It cannot be replaced
during operation.
ServerView Local Service Display (LSD) / ServerView Local Service Panel
(LSP)
A ServerView Local Service Display is installed in the RX900 S2 server. It
cannot be replaced during operation.
Power supply
The server has up to four hot-plug power supply units and supports a mains
voltage of 200 VAC - 240 VAC. The minimum system configuration with 4
CPUMEMRs requires the installation of two power supply units in a 1+1
redundant configuration. With more than 4 CPUMEMRs a minimum of 3 power
supply unit is needed in a 2+1 redundant configuration. If one power supply unit
is defective, the others guarantee unimpaired operation. The faulty power
supply unit can be replaced during operation, see "PRIMERGY RX900 S2
Server Upgrade and Maintenance Manual".
Cooling
The RX900 S2 server comprises two air circuits that are independent of each
other:
●Four fan modules in a 3+1 redundant configuration circulate the air in the
area of the CPUMEMRs and the PCIe slots. Heat sinks mounted on the
processors help to conduct the heat emission of the processors.
●The fans included in the 2+1 or 2+2 redundant power supply units circulate
the air for the power supply units themselve and for the HDD/SSD module.

18 Operating Manual RX900 S2
Functional overview
Temperature sensors variably adjust the system fans. If a temperature sensor
fails or is removed, the system fans affected run at maximum speed so as to
provide the greatest possible protection for the hardware.
If a system fan fails, unimpaired further operation is ensured. A defective
system fan module can be replaced during operation, see section "Hot-plug
fans" on page 106.
High RX900 S2 of availability and data security
When memory data is accessed, 1-bit errors in the main memory are identified
and automatically corrected with the ECC (Error Correcting Code) method. The
patented memory scrubbing function regularly starts up the EDC mechanism
(Error Detection Code) and thus ensures continuous data integrity.
The memory modules support SDDC technology (Chipkill™), which further
increases the effectiveness of memory error monitoring and correction.
Memory modules can be protected against failure by intra-CPU mirroring for 4
CPUMEMR configurations and inter-CPU mirroring for 6 or 8 CPUMEMR
configurations, see "Baseboard D3144, CPUMEMR D3145, PCIR D3146 for
PRIMERGY RX900 S2 Technical Manual".
ASR&R (Automatic Server Reconfiguration and Restart) restarts the system in
the event of an error and automatically "hides" the defective system
components.
The PDA (Prefailure Detection and Analysis) technology from Fujitsu analyzes
and monitors all components that are critical for system reliability.
The SAS RAID controller supports the RAID levels 0, 1, E1, 5, 6, 10, 50, and 60
thus increasing system availability and reliability.
Additional reliability is provided by the hot-plug HDD/SSD modules, fans and
power supply units.

RX900 S2 Operating Manual 19
Functional overview
iRMC S2 with integrated management LAN connector
IThe features of the iRMC S2 Advanced Video Redirection and Remote
Storage are available as an option.
The iRMC S2 (integrated Remote Management Controller) is a BMC with
integrated management LAN connector and expanded functionality that was
previously only available with additional plug-in cards. In this way, the iRMC S2
enables complete control of PRIMERGY servers, regardless of system status,
and thus particularly the control of PRIMERGY servers that are in the "out-of-
band" system status.
Major functions supported by the iRMC S2 include the following:
●Browser access via iRMC S2-s own Web server
●Secure communication (SSH, SSL)
●Power Management for the managed server (depending on its system
status)
●Power Consumption Management
●Connecting virtual drives as remote storage
●Text-based and graphic console bypass (Advanced Video Redirection)
●Command Line Interface (CLI)
●Simple, interactive or script-based iRMC S2 configuration
●Customer Self Service (CSS)
●iRMC S2-s own user management
●Multi-computer, global iRMC S2 user administration using an LDAP
Directory Service
●Automatic network configuration via DNS / DHCP
●Power supply of the iRMC S2 via the system standby supply
●Full-coverage alarm management
●System Event Log (SEL) reading and processing
More information about the iRMC S2 can be found in the "iRMC S2 - integrated
Remote Management Controller" user’s guide on the ServerView Suite DVD 2
under Industry Standard Servers - Software - ServerView Suite - Out-Of-Band
Management.

20 Operating Manual RX900 S2
Functional overview
Server management
Server management is implemented using the ServerView Operations Manager
supplied and the PDA (Prefailure Detection and Analysis) technology from
Fujitsu. PDA reports the threat of a system error or overload at an early stage,
allowing preventive measures to be taken.
The ServerView Operations Manager enables the management of all
PRIMERGY servers in the network via a central console. The ServerView
Operations Manager supports the following functions:
●Round-the-clock monitoring, regardless of server status
●High-performance, graphical console bypass (AVR) protected by
HTTPS/SSL (128 bit)
●Remote storage via USB
●Remote power on (Wake on LAN)
●Temperature monitoring of the CPU and DIMM memory modules and the
surrounding area
●Detailed status and error reports for processors and main memory
●Watchdog timer for Automatic Server Reconfiguration and Restart (ASR&R)
in the event that memory modules or processors fail
●Power monitoring
●End-of-life monitoring of fans with prompt notification before failure
●Watchdog timer for monitoring the operating system with ASR&R
Further information on the ServerView Operations Manager is provided in the
associated documentation.