Fujitsu PRIMERGY RX600 S6 User manual

Operating Manual - English
PRIMERGY RX600 S6 Server
Operating Manual
November 2011

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Copyright © 2011 Fujitsu Technology Solutions GmbH.
All rights reserved.
Delivery subject to availability; right of technical modifications reserved.
All hardware and software names used are trademarks of their respective manufacturers.
– The contents of this manual may be revised without prior notice.
– Fujitsu assumes no liability for damages to third party copyrights or other rights arising from
the use of any information in this manual.
– No part of this manual may be reproduced in any form without the prior written permission
of Fujitsu.
Microsoft, Windows, Windows Server, and Hyper V are trademarks or registered trademarks of
Microsoft Corporation in the USA and other countries.
Intel and Xeon are trademarks or registered trademarks of Intel Corporation or its subsidiaries
in the USA and other countries.

RX600 S6 Operating Manual
Before reading this manual
For your safety
This manual contains important information for safely and correctly using this
product.
Carefully read the manual before using this product. Pay particular attention to
the accompanying manual "Safety Notes and Regulations" and ensure these
safety notes are understood before using the product. Keep this manual and the
manual "Safety Notes and Regulations" in a safe place for easy reference while
using this product.
Radio interference
This product is a "Class A" ITE (Information Technology Equipment). In a
domestic environment this product may cause radio interference, in which case
the user may be required to take appropriate measures. VCCI-A
Aluminum electrolytic capacitors
The aluminum electrolytic capacitors used in the product's printed circuit board
assemblies and in the mouse and keyboard are limited-life components. Use of
these components beyond their operating life may result in electrolyte leakage
or depletion, potentially causing emission of foul odor or smoke.
As a guideline, in a normal office environment (25°C) operating life is not
expected to be reached within the maintenance support period (5 years).
However, operating life may be reached more quickly if, for example, the
product is used in a hot environment. The customer shall bear the cost of
replacing replaceable components which have exceeded their operating life.
Note that these are only guidelines, and do not constitute a guarantee of
trouble-free operation during the maintenance support period.
High safety use
This product has been designed and manufactured for general uses such as
general office use, personal use, domestic use and normal industrial use. It has
not been designed or manufactured for uses which demand an extremely high
level of safety and carry a direct and serious risk to life or body if such safety
cannot be ensured.

Operating Manual RX600 S6
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These uses include control of nuclear reactions in nuclear power plants,
automatic airplane flight control, air traffic control, traffic control in mass
transport systems, medical devices for life support, and missile guidance
control in weapons systems (hereafter, "high safety use"). Customers should
not use this product for high safety use unless measures are in place for
ensuring the level of safety demanded of such use. Please consult the sales
staff of Fujitsu if intending to use this product for high safety use.
Measures against momentary voltage drop
This product may be affected by a momentary voltage drop in the power supply
caused by lightning. To prevent a momentary voltage drop, use of an AC
uninterruptible power supply is recommended.
(This notice follows the guidelines of Voltage Dip Immunity of Personal
Computer issued by JEITA, the Japan Electronics and Information Technology
Industries Association.)
Technology controlled by the Foreign Exchange and Foreign Trade
Control Law of Japan
Documents produced by Fujitsu may contain technology controlled by the
Foreign Exchange and Foreign Trade Control Law of Japan. Documents which
contain such technology should not be exported from Japan or transferred to
non-residents of Japan without first obtaining authorization in accordance with
the above law.
Harmonic Current Standards
This product conforms to harmonic current standard JIS C 61000-3-2.
Only for the Japanese market: About SATA hard disk drives
The SATA version of this server supports hard disk drives with SATA / BC-SATA
storage interfaces. Please note that the usage and operation conditions differ
depending on the type of hard disk drive used.
Please refer to the following internet address for further information on the
usage and operation conditions of each available type of hard disk drive:
http://primeserver.fujitsu.com/primergy/harddisk/

RX600 S6 Operating Manual
Only for the Japanese market:
IAlthough described in this manual, some sections do not apply to the
Japanese market. These options and routines include:
– CSS (Customer Self Service)
– Replacing the lithium battery

Operating Manual RX600 S6
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RX600 S6 Operating Manual
Contents
1 Preface . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
1.1 Concept and target groups for this manual . . . . . . . . . 11
1.2 Documentation overview . . . . . . . . . . . . . . . . . . . 12
1.3 Features . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14
1.4 Notational conventions . . . . . . . . . . . . . . . . . . . . 22
1.5 Technical data . . . . . . . . . . . . . . . . . . . . . . . . . 22
2 Overview of the installation steps . . . . . . . . . . . . . . . 25
3 Important information . . . . . . . . . . . . . . . . . . . . . 27
3.1 Safety instructions . . . . . . . . . . . . . . . . . . . . . . . 27
3.2 CE conformity . . . . . . . . . . . . . . . . . . . . . . . . . 35
3.3 FCC Class A Compliance Statement . . . . . . . . . . . . . 36
3.4 Transporting the server . . . . . . . . . . . . . . . . . . . . 37
3.5 Notes on installing the server in the rack . . . . . . . . . . . 38
3.6 Environmental protection . . . . . . . . . . . . . . . . . . . 39
4 Hardware installation . . . . . . . . . . . . . . . . . . . . . . 41
4.1 Unpacking the server . . . . . . . . . . . . . . . . . . . . . 42
4.2 Rack installation/removal of server . . . . . . . . . . . . . . 43
4.2.1 Rack system requirements . . . . . . . . . . . . . . . . . . . 43
4.2.2 Mounting the server into the rack . . . . . . . . . . . . . . . . 46
4.3 Connecting devices to the server . . . . . . . . . . . . . . . 47
4.4 Connecting the server to the mains . . . . . . . . . . . . . . 49
4.4.1 Installation requirements . . . . . . . . . . . . . . . . . . . . . 49
4.4.2 Connecting the power cord . . . . . . . . . . . . . . . . . . . 54
4.5 Notes on connecting/disconnecting cables . . . . . . . . . 55

Operating Manual RX600 S6
Contents
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5 Starting up and operation . . . . . . . . . . . . . . . . . . . . 57
5.1 Control elements and indicators . . . . . . . . . . . . . . . . 57
5.1.1 Front of server . . . . . . . . . . . . . . . . . . . . . . . . . . 57
5.1.1.1 Control elements . . . . . . . . . . . . . . . . . . . . . . . 59
5.1.1.2 Indicators on the control panel . . . . . . . . . . . . . . . . 60
5.1.1.3 Indicators on the accessible drives/components . . . . . . . 61
5.1.1.4 Indicators on the hot-plug HDD/SSD modules . . . . . . . . 62
5.1.2 Rear of server . . . . . . . . . . . . . . . . . . . . . . . . . . . 63
5.1.2.1 Global Error indicator and CSS indicator . . . . . . . . . . . 63
5.1.2.2 ID indicator and button . . . . . . . . . . . . . . . . . . . . 65
5.1.2.3 Indicators on the connector panel (LAN indicators) . . . . . . 66
5.1.2.4 Indicators on the hot-plug power supply units . . . . . . . . . 67
5.2 Switching the server on and off . . . . . . . . . . . . . . . . 69
5.3 Configuring the server . . . . . . . . . . . . . . . . . . . . . 72
5.3.1 Configuring the SAS/SATA RAID controller card . . . . . . . . . 72
5.3.2 Configuring the server and installing the operating system
with the ServerView Installation Manager . . . . . . . . . . . . . 73
5.3.3 Configuring the server and installing the operating system
without the ServerView Installation Manager . . . . . . . . . . . 74
5.4 Cleaning the server . . . . . . . . . . . . . . . . . . . . . . . 75
6 Property and data protection . . . . . . . . . . . . . . . . . . 77
6.1 Mechanical access protection . . . . . . . . . . . . . . . . . 77
6.2 BIOS Setup security functions . . . . . . . . . . . . . . . . . 77
7 Troubleshooting and tips . . . . . . . . . . . . . . . . . . . . 79
7.1 Power-on indicator remains unlit . . . . . . . . . . . . . . . . 79
7.2 Server switches itself off . . . . . . . . . . . . . . . . . . . . 79
7.3 Screen remains blank . . . . . . . . . . . . . . . . . . . . . . 80
7.4 Flickering stripes on monitor screen . . . . . . . . . . . . . 81
7.5 No screen display or display drifts . . . . . . . . . . . . . . . 81
7.6 Incorrect date and time . . . . . . . . . . . . . . . . . . . . . 82
7.7 Drives reported as "dead" when starting system . . . . . . . 82

RX600 S6 Operating Manual
Contents
7.8 Added drive reported as defective . . . . . . . . . . . . . . 82
7.9 Error message on screen . . . . . . . . . . . . . . . . . . . 83
8 CSS components . . . . . . . . . . . . . . . . . . . . . . . . 85
8.1 Hot-plug components . . . . . . . . . . . . . . . . . . . . . 87
8.1.1 Hot-plug power supply units . . . . . . . . . . . . . . . . . . 87
8.1.1.1 Replacing a hot-plug power supply unit . . . . . . . . . . . 88
8.1.1.2 Adding a hot-plug power supply unit . . . . . . . . . . . . . 89
8.1.2 Hot-plug fans . . . . . . . . . . . . . . . . . . . . . . . . . . 91
8.1.2.1 Replacing a defective fan . . . . . . . . . . . . . . . . . . 92
8.1.2.2 Adding new fans . . . . . . . . . . . . . . . . . . . . . . . 93
8.1.3 Hot-plug HDD/SSD modules . . . . . . . . . . . . . . . . . . 94
8.1.3.1 HDD/SSD module and dummy module . . . . . . . . . . . 96
8.1.3.2 Removing/installing the dummy module . . . . . . . . . . . 97
8.1.3.3 Installing the HDD/SSD module . . . . . . . . . . . . . . . 98
8.1.3.4 Removing the HDD/SSD module . . . . . . . . . . . . . . 99
8.1.4 Hot-plug expansion cards . . . . . . . . . . . . . . . . . . . . 101
8.1.4.1 Identifying the defective CSS component . . . . . . . . . . 103
8.1.4.2 Removing a hot-plug expansion card . . . . . . . . . . . . 103
8.1.4.3 Removing a dummy module . . . . . . . . . . . . . . . . . 106
8.1.4.4 Installing a hot-plug expansion card . . . . . . . . . . . . . 107
8.1.5 Hot-plug memory boards . . . . . . . . . . . . . . . . . . . . 109
8.1.5.1 Identifying the defective memory . . . . . . . . . . . . . . . 110
8.1.5.2 Removing the memory board in question . . . . . . . . . . 111
8.1.5.3 Removing a defective memory module . . . . . . . . . . . 111
8.1.5.4 Installing a new memory module . . . . . . . . . . . . . . . 113
8.1.5.5 Reinstalling the memory board in question . . . . . . . . . 113
8.1.5.6 Adding a memory board . . . . . . . . . . . . . . . . . . . 114
8.2 Non-hot-plug components . . . . . . . . . . . . . . . . . . . 116
8.2.1 Identifying the defective CSS component . . . . . . . . . . . . 117
8.2.2 Replacing a non-hot-plug expansion card . . . . . . . . . . . . 117
8.2.2.1 Removing a non-hot-plug expansion card . . . . . . . . . . 117
8.2.2.2 Installing a non-hot-plug expansion card . . . . . . . . . . . 118
8.2.3 Replacing SFP+ transceiver modules . . . . . . . . . . . . . . 119
8.2.3.1 Removing an SFP+ transceiver module . . . . . . . . . . . 119
8.2.3.2 Installing SFP+ transceiver modules . . . . . . . . . . . . 121
8.3 Opening/Closing the server . . . . . . . . . . . . . . . . . . 125
8.3.1 Opening the server . . . . . . . . . . . . . . . . . . . . . . . 125
8.3.2 Closing the server . . . . . . . . . . . . . . . . . . . . . . . . 127

Operating Manual RX600 S6
Contents
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9 Appendix: server specification . . . . . . . . . . . . . . . . 129

RX600 S6 Operating Manual 11
1 Preface
The scalable PRIMERGY RX600 S6 server is an Intel-based rack server for
critical company scenarios, e.g. as database management system for medium
or large-sized databases or as a consolidation basis to run an immensely large
number of different applications using virtualization technologies.
Thanks to its highly developed hardware and software components, the server
offers a high level of data security and availability. These include hot-plug
HDD/SSD modules, hot-plug system fans, and also hot-plug power supply
units, the Server Management ServerView Suite, Prefailure Detection and
Analysis (PDA) and Automatic Server Reconfiguration and Restart (ASR&R).
Security functions in the BIOS Setup and on the system board protect the data
on the server against manipulation. Additional security is provided by the
lockable rack door.
The server occupies 4 height units (HU) in the rack.
1.1 Concept and target groups for this manual
This operating manual describes how to install, set up and operate your server.
This operating manual is intended for those responsible for installing the
hardware and ensuring that the system runs smoothly. It contains all the
information you need to put your PRIMERGY RX600 S6 into operation.
To understand the various expansion options, you will need to be familiar with
the fields of hardware and data transmission and you will require a basic
knowledge of the underlying operating system.

12 Operating Manual RX600 S6
Preface
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1.2 Documentation overview
More information on your PRIMERGY RX600 S6 can be found in the following
documents:
– "Quick Start Hardware - PRIMERGY RX600 S6" leaflet
"はじめにお読みください -PRIMERGY RX600 S6" for the Japanese market
(only included as a printed copy)
– "Quick Start Software - Quick Installation Guide" DVD booklet
(only included with the ServerView Suite as a printed copy)
– "Safety Notes and Regulations" manual
"安全上のご注意 " for the Japanese market
– "Warranty" manual
"保証書 " for the Japanese market
– "ServerView Suite Local Service Concept - LSC" manual
– "Returning used devices" manual and "Service Desk" leaflet
"サポート＆サービス " for the Japanese market
– "PRIMERGY RX600 S6 Server Operating Manual"
– "PRIMERGY RX600 S6 Server Options Guide"
– "System Board D3141 for PRIMERGY RX600 S6 Technical Manual"
– "System Board D3141 BIOS Setup Utility for PRIMERGY RX600 S6"
manual

RX600 S6 Operating Manual 13
Preface
IPRIMERGY manuals are available in PDF format on the
ServerView Suite DVD 2. The ServerView Suite DVD 2 is part of the
ServerView Suite supplied with every server.
If you no longer have the ServerView Suite DVDs, you can obtain the
relevant current versions using the order number U15000-C289 (the
order number for the Japanese market: please refer to the configurator
of the server http://primeserver.fujitsu.com/primergy/system/).
The PDF files of the manuals can also be downloaded free of charge
from the Internet. The overview page showing the online documentation
available on the Internet can be found using the URL (for EMEA market):
http://manuals.ts.fujitsu.com. The PRIMERGY server documentation can
be accessed using the Industry standard servers navigation option.
For the Japanese market:
Please refer to the following URL for the latest product manuals:
http://primeserver.fujitsu.com/primergy/manual/
Before using the product, please check for additional information that
may be available under the following URL:
http://primeserver.fujitsu.com/primergy/products/note/
Further sources of information:
– ServerView Suite Glossary on the ServerView Suite DVD 2
– Manual for the monitor
– Documentation for the boards and drives
– Operating system documentation
– Information files in your operating system

14 Operating Manual RX600 S6
Preface
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1.3 Features
Customer Self Service (CSS)
The PRIMERGY Customer Self Service (CSS) concept enables you to identify
and replace the affected component yourself in the case of certain error
scenarios.
In the CSS concept, you can replace the following components yourself in the
event of an error:
– Hot-plug hard disk drives and solid state disks
– Hot-plug power supply units
– Hot-plug Memory modules
– Hot-plug System fans
– Expansion cards (as soon as released)
For information on replacing these components, see chapter "CSS
components" on page 85.
CSS indicators on the control panel and on the back of the PRIMERGY server
provide you with information if a CSS event arises (for more information on the
behavior of these indicators, see chapter "Starting up and operation" on
page 57 and the "ServerView Suite Local Service Concept - LSC" manual on
the ServerView Suite DVD 2).
Your server is equipped with a ServerView Local Service Display, which enables
you to identify the type of component affected by the error directly on the server
(for more information, see the "ServerView Suite Local Service Concept - LSC"
manual on the ServerView Suite DVD 2).
In addition, CSS errors are displayed in the ServerView Operations Manager,
the server management software from Fujitsu.
In the event of errors, the ServerView Operations Manager refers you directly
to the affected component and its order information in the Illustrated Spares
catalog of the server in question. (This feature is not available for the Japanese
market.)

RX600 S6 Operating Manual 15
Preface
System board
The features of the system board are described in the "System Board D3141 for
PRIMERGY RX600 S6 Technical Manual" for the hardware and in the "System
Board D3141 BIOS Setup Utility for PRIMERGY RX600 S6" manual for the
firmware.
Hot-plug PCI slots
The server has ten PCI-Express slots, where two of them are hot-plug slots.
These hot-plug PCI-Express slots allow installation and removal of boards
during operation when the operating system supports this function (for further
details see section "Hot-plug expansion cards" on page 101).
Hard disk drives
The server can be equipped with up to 8 HDD/SSD modules. Each HDD/SSD
module can accommodate an HDD/SSD drive with a 2.5-inch format. The
modules are connected to the SAS/SATA backplane wirelessly. This allows
HDD/SSD modules to be plugged in or pulled out easily.
The hard disk system is designed for SAS/SATA with one channel for each hard
disk drive.
If the server has the corresponding RAID configuration, HDD/SSD modules can
also be replaced during operation.
SAS/SATA controller card (optionally with RAID controller)
The SAS/SATA controller card for operating up to eight SAS/SATA hard disk
drives can be alternately without or with RAID functionality. In case of RAID
functionality the levels 0, 1, 1E, 5, 6, 10, 50 and 60 are supported.
Battery Backup Units
Up to two intelligent Battery Backup Units (iBBUs) back up the memory contents
of their corresponding RAID controllers in the event of power failure (option).
Accessible drives/components
A number of mounting locations are available:
– An installation slot for a ServerView Local Service Display (standard)
– An installation slot for a slimline DVD/BD drive (option)
– A 5.25-inch bay for a magnetic tape drive (option)

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Preface
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The accessible drives/components integrated in these locations cannot be
replaced during operation.
Power supply
The server has up to four hot-plug power supply units that automatically switch
to a mains voltage of 100 - 127 V / 200 - 240 V. This ensures redundant power
supply. If one power supply unit is defective, the other(s) then guarantee(s)
unimpaired operation. The faulty power supply unit can be replaced during
operation (for further details see "Hot-plug power supply units" on page 87).
Cooling
Each processor has a heat sink. Further cooling for the installed processors is
provided by hot-plug fans (optionally in a redundant configuration).
Temperature sensors variably adjust the fans. If a temperature sensor fails or is
removed, the fans affected run at maximum speed so as to provide the greatest
possible protection for the hardware.
If a fan fails, unimpaired further operation is ensured. A defective fan module
can be replaced during operation (for further details see "Hot-plug fans" on
page 91).
High level of availability and data security
When memory data is accessed, 1-bit errors in the main memory are identified
and automatically corrected with the ECC (Error Correcting Code) method. The
patented memory scrubbing function regularly starts up the EDC mechanism
(Error Detection Code) and thus ensures continuous data integrity.
The memory modules used support SDDC technology (Chipkill™), which
further increases the effectiveness of memory error monitoring and correction.
Support is likewise provided for hot-spare memory technology, in which a
memory module is used like a replacement module. If a memory module fails,
the module with the defective memory is automatically deactivated and the
replacement module is activated (provided it has been configured for
appropriately in the BIOS). The deactivated memory module is no longer used
and the faulty memory module can be replaced at the next opportunity. In order
to be able to use the hot-spare memory function, all occupied DIMM slots must
have an identical memory configuration.
Memory modules can be protected against failure through mirroring (memory
mirroring, requires two or four memory modules).

RX600 S6 Operating Manual 17
Preface
ASR&R (Automatic Server Reconfiguration and Restart) restarts the system in
the event of an error and automatically "hides" the defective system
components.
The PDA (Prefailure Detection and Analysis) technology from Fujitsu analyzes
and monitors all components that are critical for system reliability.
The SAS/SATA controller card supports the RAID levels 0, 1, 1E, 5, 6, 10, 50
and 60 thus increasing system availability and reliability.
Additional reliability is provided by the hot-plug HDD/SSD modules, fans and
power supply units.

18 Operating Manual RX600 S6
Preface
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iRMC S2 with integrated management LAN connector
IThe features of the iRMC S2 Advanced Video Redirection and Remote
Storage are available as an option.
The iRMC S2 (integrated Remote Management Controller) is a BMC with
integrated management LAN connector and expanded functionality that was
previously only available with additional plug-in cards. In this way, the iRMC S2
enables complete control of PRIMERGY servers, regardless of system status,
and thus particularly the control of PRIMERGY servers that are in the "out-of-
band" system status.
Major functions supported by the iRMC S2 include the following:
●Browser access via iRMC S2-s own Web server
●Secure communication (SSH, SSL)
●Power Management for the managed server (depending on its system
status)
●Power Consumption Management
●Connecting virtual drives as remote storage
●Text-based and graphic console bypass (Advanced Video Redirection)
●Command Line Interface (CLI)
●Simple, interactive or script-based iRMC S2 configuration
●Customer Self Service (CSS)
●iRMC S2-s own user management
●Multi-computer, global iRMC S2 user administration using an LDAP
Directory Service
●Automatic network configuration via DNS / DHCP
●Power supply of the iRMC S2 via the system standby supply
●Full-coverage alarm management
●System Event Log (SEL) reading and processing
More information about the iRMC S2 can be found in the "iRMC S2 - integrated
Remote Management Controller" user’s guide (on the ServerView Suite DVD 2
under Industry Standard Servers - Software - ServerView Suite - Out-Of-Band
Management).

RX600 S6 Operating Manual 19
Preface
Server management
Server management is implemented using the ServerView Operations Manager
supplied and the PDA (Prefailure Detection and Analysis) technology from
Fujitsu. PDA reports the threat of a system error or overload at an early stage,
allowing preventive measures to be taken.
The ServerView Operations Manager enables the management of all
PRIMERGY servers in the network via a central console. The ServerView
Operations Manager supports the following functions:
●Round-the-clock monitoring, regardless of server status
●High-performance, graphical console bypass (AVR) protected by
HTTPS/SSL (128 bit)
●Remote storage via USB
●Remote power on
●Temperature monitoring of the CPU and the surrounding area
●Detailed status and error reports for processors and main memory
●Watchdog timer for Automatic Server Reconfiguration and Restart (ASR&R)
in the event of failure of memory modules or processors
●Power monitoring
●End-of-life monitoring of fans with prompt notification before failure
●Watchdog timer for monitoring the operating system with ASR&R
Further information on the ServerView Operations Manager is provided in the
associated documentation.

20 Operating Manual RX600 S6
Preface
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ServerView Installation Manager
You can configure the PRIMERGY server quickly and precisely with the
ServerView Installation Manager software provided. User-guided menus are
available for installing the server operating system (for further details see
section "Configuring the server" on page 72).
Service and support
PRIMERGY servers are service-friendly and modular, enabling quick and easy
maintenance.
For easier and immediate recognition, handles and locks (touch points) are
color coded. Green touch points are for components that can be replaced
without tools as well as for hot-plug components that can be replaced or
inserted during operation without the need for tools (see also "CSS
components" on page 85).
You can use the ServerView Local Service Display on the front panel of the
server to check the status of the key system components at any time without
opening the housing. Further information on ServerView Local Service Display
is provided in the associated documentation.
For further information, please refer to the diagnosis LEDs on the hot-plug
components (power supply units, fans, expansion cards, HDD/SSD modules).
The ServerView Update Manager supplied with the Fujitsu utilities supports a
fast remote BIOS update via the LAN interface; the BIOS can also be updated
locally via USB. The optional ServerView Remote Management remote testing
and diagnostic system enables you to remotely maintain your server.