Intel R1000RP Series Original operating instructions

* 2.5" hard drive bay system as shown
Thank you for buying an Intel® Server System. The following information will help you
assemble your Intel® Server System and install components.
If you are not familiar with ESD [ElectroStatic Discharge] procedures used during
system integration, see the complete ESD procedures described in your Service Guide.
This guide and other supporting documents are located on the web at:
http://www.intel.com/p/en_US/support/.
Intel® Server System R1000RP Family
Quick Installation User's Guide
G85599-002

(This page is intentionally left blank.)

i
General Installation Process ........................................................................................................ 2
Reference ............................................................................................................................................ 12
System Overview .............................................................................................................................. 1
Preparing the System ...................................................................................................... 2
Remove the Top Cover .................................................................................................... 2
Remove the Air Duct ........................................................................................................ 2
Remove Processor Heatsink ........................................................................................ 2
Install the Processor ........................................................................................................ 3
Install Processor Heatsink ............................................................................................. 4
Install Memory Modules .................................................................................................. 4
Install Hard Drives .............................................................................................................. 5
Install Optical Drive ............................................................................................................ 7
Install the Air Duct ............................................................................................................. 8
Remove Add-in Card Riser Assembly ...................................................................... 8
Install Add-in Card .............................................................................................................. 8
Install Add-in Card Riser Assembly ........................................................................... 8
Install Rack Handles .......................................................................................................... 8
Install Intel® I/O Expansion Module (optional) ..................................................... 9
Install Intel® ESRT2 RAID AXXRAKSW5 Upgrade Key (optional) ................ 9
Install Intel® Remote Management Module 4 (optional) ................................ 9
Install Intel® RAID Smart Battery (optional) ........................................................ 10
Replace Fixed Power Supply Module (optional) ............................................... 10
Replace Redundant Power Supply Module (optional) .................................. 10
Install Bezel (optional) .................................................................................................... 11
Install the Top Cover ........................................................................................................ 11
Finishing Up ......................................................................................................................... 11
Software ............................................................................................................................... 11
Table of Contents

ii
Warning
Read all caution and safety
statements in this document
before performing any of the
instructions. Also see the Intel
®
Server Board and Server Chassis
Safety Information document at:
http://www.intel.com/support/
motherboards/server/sb/cs-010770
.htm for complete safety information.
Installation and service
of this product is to be
performed only by
qualified service personnel
to avoid risk of injury from
electrical shock or energy
hazard.
Warning Caution
Observe normal ESD
[Electrostatic Discharge]
procedures during system
integration to avoid possible
damage to server board and/or
other components.
Tools Required
Anti-static
wrist strap
Phillips*
screwdriver
Intel®is a registered trademark of Intel Corporation or its subsidiaries in the United States and other countries. *Other names and brands may be claimed as the
property of others. Copyright © 2013, Intel Corporation. All rights reserved.
Thermal Operation and Configuration Requirements
To keep the system operating within supported maximum thermal limits, the system must meet the following operating and configuration
guidelines:
• Ambient in-let temperature cannot exceed 35 ºC and should not remain at this maximum level for long periods of time.
Doing so may affect long term reliability of the system.
•DIMM Population on CPU: Install DIMMs the in order; Channels A, and B. Start with 1st DIMM slot (blue) on each channel.
•All hard drive bays must be populated. Hard drive carriers either can be populated with a hard drive or supplied drive blank.
•The air duct must be installed at all times.
• The system top-cover must be installed at all times.

System Fans
Memory Slots
PCI Slots
Server Board
CPU
Air Duct
Hard Drive Bays
Front Control Panel
Power Supply
System Features and Components
* 2.5" Hard Drive Bay system as shown
1
System Overview
Intel® Server System R1000RP Family

2
General Installation Process
The installation instructions in this section are for common components of Intel® Server System
R1000RP family.
Minimum Hardware Requirements
•Memory Type:
Minimum of one 1GB DDR3L 1333/1600 MHz ECC UDIMM
•Processor: Intel®Xeon®processor E3-1200 V3 product family or the 4th
Generation Intel®Core™ i3 processor series.
•Hard Disk Drives: SATA
For a complete list of compatible processors, heatsinks, and memory, see
http://www.intel.com/p/en_US/support/ (post-production only)
To avoid integration difficulties and possible board damage, your system must meet
the following minimum requirements:
1
Preparing the System
Observe normal ESD (Electrostatic Discharge)
procedures.
Place your Intel®Server System on a flat anti-static
surface to perform the following integration procedures.
Observe ESD procedures before reaching inside to make
server board connections or install components.
IMPORTANT!
Before proceeding
further, check your
Intel®Server System
for disconnected or
loose cables and
components that
may have occurred
during shipping. TIM
2
3
1
4
Chassis Front
A
B
C
Remove Processor Heatsink
The heatsink is attached to the server board / processor socket with captive fasteners.
Lift the heatsink straight up.
A
B
C
CAUTION: The heatsink has thermal interface material (TIM) on the underside
of it. Use caution so that you do not damage the thermal interface material.
Use gloves to avoid sharp edges.
Using a #2 Phillips* screwdriver, loosen the four screws located on the
heatsink corners in a diagonal manner using the following procedure:
Using a #2 Phillips* screwdriver, start with screw 1 and loosen it by
giving it two rotations and stop. (IMPORTANT: Do not fully loosen.)
Proceed to screw 2 and loosen it by giving it two rotations and stop.
Similarly, loosen screws 3 and 4.
Repeat steps A and B by giving each screw two rotations each time
until all screws are loosened.
4
A
B
B
2
Remove the Top Cover
B
Remove the four screws.
Slide cover back
and lift upward.
A
3
Remove the Air Duct
Remove the air duct by
lifting straight up.

3
General Installation Process
5Install the Processor
Cautions:
When removing the protective
cover, DO NOT TOUCH the
gold socket pins.
A
When unpacking a processor,
hold by the edges only to avoid
touching the gold contact pins.
C
To avoid damage, DO NOT
DROP the cover onto the
socket pins or components.
B
A. Open the Socket Lever
Push the lever
handle
down
and away
from the socket
to release it.
Rotate the lever
open all the way.
A
B
A
B. Open the
Load Plate
C. Unpack the Processor
Open the load
plate as shown.
Carefully remove
protective cover
as shown.
Save the
protective
cover.
Install the Processor ... continued
CAUTION: The underside of the processor has components
that may damage the socket wires if installed improperly.
Processor must align correctly with the socket opening
before installation.
DO NOT DROP processor into socket!
Components
Orient the processor with the socket so that the processor
cutouts match the two
socket pins.
A
Note location
of gold key at
corner of
processor.
B
A
B
D. Install the Processor
Carefully lower the load plate
over the processor.
E. Close the Load Plate
Carefully lower the load plate
over the processor.
Install the Processor ... continued
A
B
Make sure the front edge of the load plate
slides under the shoulder
screw as the lever is
lowered.
Close the load
plate locking
lever.
A
Load Plate
Front Edge
Shoulder
Screw
F. Engage the Load Plate
A
B
Push down on the locking lever.
Slide the tip
of the lever
under the
notch in the
load plate.
Make sure
the lever is securely latched.
CAUTION: DO NOT damage the
server board with the tip of the
locking lever.
Save the
protective
cover.
A
A
A
B
H. Remove the Cover
Carefully lift the cover
straight up as shown.
G. Latch the Locking Lever

4
General Installation Process
C
AIRFLOW
Chassis Front
2
3
1
4
A
B
TIM
D
CAUTION:
Do not
over-tighten
fasteners.
E
Note: Heatsink styles may vary.
Remove the protective film on the TIM if present.
D
CAUTION: The heatsink has thermal interface
material (TIM) on the underside of it. Use caution so
that you do not damage the thermal interface material.
Use gloves to avoid sharp edges.
E
C
A
BAlign heatsink fins to the front and back of
the chassis for correct airflow.
Airflow goes from front-to-back of chassis.
Each heatsink has four captive fasteners and
should be tightened in a diagonal manner using
the following procedure:
Using a #2 Phillips* screwdriver,
start with screw 1 and engage screw
threads by giving it two rotations
and stop. (Do not fully tighten.)
Proceed to screw 2 and engage screw
threads by giving it two rotations and
stop. Similarly, engage screws 3 and 4.
Repeat steps C and D by giving each
screw two rotations each time until
each screw is lightly tightened up to
a maximum of 8 inch-lbs torque.
6Install Processor Heatsink 7Install Memory Modules
DDR3L DIMM Memory Identification:
Other
Memory
DDR3
CAUTION: Observe normal ESD (ElectroStatic
Discharge) procedures to avoid possible damage to
system components.
DIMM notch and socket bump must align as shown below.
This server board supports up to 6 DDR3L 1333/1600
ECC UDIMM. Non-ECC memory is NOT supported by
this server board.
Note: For additional memory configurations, see the Service Guide on the
Intel®Server Deployment & Management DVD that accompanied
your Intel®Server System, or go to:
http://www.intel.com/p/en_US/support/ (post-production)
Memory sizing and configuration is supported only for qualified DIMMs approved by
Intel®. For a list of supported memory, go to:
http://serverconfigurator.intel.com/sct_app.aspx (post-production)
For the best performance, a minimum of three DIMMs per CPU is recommended,
populated in the blue slot of each memory channel.
Install Memory Modules ...continued
Memory Configurations and Population Order:
Intel®Server Board S1200V3RPM
DIMM_A2 DIMM_A1 DIMM_B2 DIMM_B1
CPU Socket
Install DIMM Memory Modules ... Continued
To Install DIMMs:
Open both DIMM socket levers.
C
A
D
E
Note location of alignment notch.
B
CAUTION: Avoid touching contacts
when handling or installing DIMMs.
A
C
DB
E
IMPORTANT! Visually check that each latch is fully closed and correctly engaged with each DIMM edge slot.
Push down firmly on the DIMM until it snaps into place and both levers close.
Insert DIMM making sure the connector edge of the DIMM aligns correctly with the slot.

5
General Installation Process
8Install
Hard Drives
D
C
2.5" HDD
E
2.5" Hard Drive Carrier (For system with 2.5" hard drive bay only)
Hard Drive Numbering Diagram
Drive 0 Primary
8 x 2.5" hard drive bay as shown
A
B
Remove the drive carrier by pressing the green latch
to unlock.
Pull out the black lever and slide the carrier out.
Remove the four screws securing the plastic drive blank
from the 2.5” HDD carrier.
Disengage the plastic drive blank from the HDD carrier.
Remove the plastic drive blank from the 2.5” HDD carrier.
C
D
Install the hard disk drive using the four screws as shown. Make Sure
that the connector end of the drive matches the backplane connector.
E
With the lever open, insert the hard disk drive assembly into the chassis,
then push in the lever to lock it into place.
F
CAUTION: If you do not
install all drives, empty drive
bays must be occupied by
carriers with plastic drive
blank provided to maintain
proper system cooling.
A
B
F
0
1
2
3
4
5
67

6
General Installation Process
2.5" HDD
d3
d4
2.5" HDD
Install Hard Drives ...continued
3.5" Hard Drive Carrier (For system with 3.5" Hot Swap hard drive bay only)
Hard Drive Numbering Diagram
Drive 0 Primary
A
B
Remove the drive carrier by pressing the green button and opening
the lever.
E
F
Slide the carrier out.
TOP
BREAK OFF TAB
BEFORE MOUTING
2.5´´ HARD DRIVE
C
Remove the four screws securing the HDD interface bracket and remove
the HDD interface bracket.
Install 2.5” Hard Drive as option:
3.5´´ HDD
D
D
Install the hard disk drive using the same four screws as shown. Make
sure the connector end of the drive matches the backplane connector.
With the lever open, insert the hard disk drive assembly into the chassis.
Push in the lever to lock it into place.
4 x 3.5” hard drive bay as shown
CAUTION: If you do not
install all drives, empty drive
bays must be occupied by
carriers with plastic drive
blank provided to maintain
proper system cooling.
d1 d4
d2 d3
Install the HDD interface bracket
from top. Secure the bracket with
three screws as shown.
Slide the 2.5” HDD into the
bracket to align the screw holes
with the right and the left rail.
Break off the tab on the
HDD interface bracket.
Secure the hard disk drive using
the four screws for 2.5” HDD.
d1
Bottom
View
TOP
BREAK OFF TAB
BEFORE MOUTING
2.5´´ HARD DRIVE
d2
TOP
BREAK OFF TAB
BEFORE MOUTING
2.5´´ HARD DRIVE
A
B
F
E
0 1 2 3
C

7
General Installation Process
Install Hard Drives ...continued
3.5" Fixed Hard Drive
Hard Drive Numbering Diagram
Drive 0 Primary 3.5” Fixed hard drive as shown
B
Remove the screws securing
the drive carrier to
the chassis.
Slide the carrier away
from the chassis.
A
Note: Hard
drive 0 location
is shown
above.
B
Screw
A
CInsert hard drive into
the carrier with
the bottom-side
of the drive facing up. C
Attach the hard drive to the carrier with
four screws as shown.
D
D
Re-install the hard drive/carrier assembly
into the chassis.
E
Secure the hard
drive/carrier assembly
with the screws.
F
F
Screw
E
0 1 2 3
AB
IMPORTANT NOTE: If you do not
install a device at this location,
install the optical device bay filler
panel shown below.
This is required to maintain
proper system cooling.
Rear View
of Optical
Drive
A
Install the plastic guide onto the back
of the drive and attach with two screws
as shown.
Insert the optical drive into chassis opening
and push all the way until it stops.
CConnect the cables as shown.
Optical
Device
Assembly
B
Data
Power
Optical
Drive
C
9Install Optical Drive

8
General Installation Process
12 Install Add-in Card
REMOVE Filler Panel
A
B
Add-in Card
C
Riser Connector
•Full-height PCIe Card Shown
A
B
C
CAUTION:
Observe normal ESD precautions
when installing add-in cards.
Insert add-in card until it sits in the riser connector.
Secure add-in card with screw as shown.
Note: Make sure that all empty add-in card slots have
filler panels installed.
Note: Add-in card install sequence for low-profile add-in
cards is the same.
Remove the filler panel from the add-in card slot and
remove the screw as shown.
Riser Card
Connector
Grasp the riser assembly with
both hands and pull up to
remove from system.
CAUTION:
Place the riser
assembly
upside down to
avoid damage
to the riser card
connector.
11 Remove Add-in Card
Riser Assembly
Align the two holes on the air duct with the alignment
pins on the chassis and install the air duct into place.
Use care to avoid pinching system cables.
10 Install the Air Duct
Note: Rack handles are required to install
the bezel. For detailed instructions, see the
Service Guide.
14 Install Rack Handles
Add-in Card
Slots
Hooks
13 Install Add-in Card Riser Assembly
Position the riser card edge
connector over the server
board riser socket and align
the hook of the riser with the
slot at the back of the chassis,
then press straight down into
riser socket.

General Installation Process
9
I/O Connector
AF006070
I/O Module
A
B
C
D
15 Install Intel® I/O Expansion Module
(optional)
A
D
B
Squeeze the sides of the filler panel to
disengage it from the server system
back panel and remove it.
Position the module over the server
board, fit the front of the module into
the back panel slot.
Secure the module with the three
screws as shown.
C
Attach the module to the server
board connector.
Note: If included, remember to install the EMI shield.
SATA_KEY
Locate the white 4-pin key,
carefully pick up the Intel® RAID
C600 Upgrade Key. Match the
key and connector orientation
and press down to install.
Install Intel® ESRT2 RAID
AXXRAKSW5
Upgrade Key
(optional)
16
D
Chassis
Back
Opening
Filler
RMM4 NIC
Connector
Latch E
Bottom View
Latch
C
B
ALocate the RMM4 Lite
connector close to the
Riser Slot.
Carefully pick up the
Intel®RMM4 Lite
module, match the
alignment pin of the
module and the
connector on server
board. Press to install.
Installing the Intel® RMM4 Lite Installing the Intel® RMM4 NIC
17 Install Intel® Remote Management Module 4 (optional)
RMM4 Lite
Connector
AA
Attach the metal fastening bracket to Intel®Dedicated
Server Management NIC module and secure the bracket
with two screws.
B
Remove the alternate RMM4 knock out by pressing the
knock out from inside the chassis.
E
Connect the cable to the cable connector on the Intel®Dedicated Server Management NIC module.
D
Mount the NIC module to the rear panel of the chassis and secure the bracket with two screws.
C
Connect the cable to the RMM4 NIC connector to the RMM4 NIC connector on your server board.
Caution: Carefully remove the knock out with screwdriver, directly removing it with finger has potential risk.
Caution: Care should be used when attaching or removing this cable. Mishandling the cable could cause damage.

10
General Installation Process
20 Replace Redundant Power Supply Module (optional)
Insert the power supply module into the power
supply cage and push all the way until it clicks
into place.
Using the handle, pull the module from the
chassis while pressing the green latch in the
direction shown.
Power Supply Removal Power Supply Installation
A
B
18 Install Intel® RAID Smart Battery (optional)
ALocate the BBU bracket inside the chassis. Align the tabs on the plastic battery holder
with mounting holes on the BBU bracket.
BSlide the plastic battery holder toward the rear of the system until the tabs engage with
the mounting holes in the BBU bracket.
AB
B
A
19 Replace Fixed Power Supply Module (optional)
AInsert the power supply module into
the chassis.
A
Unsecure the three screws from the
module as shown.
Secure the module with the three screws
as shown.
B
Remove the power supply module.
B

11
General Installation Process
Network
NIC 1
NIC 2
USB
Ports
Add-in Card Slot
2nd Power
Supply
Module
1st Power
Supply
Module
Serial
Port A Intel ® I/O
Module
(optional)
Video
Display Port
(S1200V3RPM only)
Intel ®RMM4
NIC Port
(optional)
1. Verify the system top cover is installed.
2. Install the server into the rack using the instructions
provided with the rack mounting kit.
3. Connect your USB keyboard/mouse, video and other
I/O cables/devices as shown.
Then connect the power cord(s).
CAUTION: This system must be operated with the
TOP COVER installed to ensure proper cooling.
Before installing your operating system, you
must finish your system installation, make I/O
connections, and plug in power cord(s).
For system with S1200V3RP Server Board
23
Finishing Up
Software •BIOS, Drivers, and Operating System Installation
24
B. Configure your RAID Controller:
If using a RAID card, use the instructions provided with the RAID controller. If using on-board RAID, you must activate RAID in the BIOS setup. See the Intel®Server System
R1000RP Service Guide for more information.
C. Install your Operating System:
Use the instructions provided with the RAID controller and with the operating system.
D. Install Operating System Drivers:
With the operating system running, insert the Intel®Server Deployment & Management DVD. If using a Microsoft Windows* operating system, the Express Installer will
autorun and allow you to select the appropriate drivers to install. On other operating systems, browse the CD folders to locate and install the driver files.
E. Install Intel® System Management Software (optional):
Download the latest version of the Intel®System Management Software from
http://www.intel.com/content/www/us/en/server-management/intel-server-management.html and use the instructions provided at that link to install the software.
A. Update the System Software:
2. Use the Wizard to access the latest versions on the Internet and update the BIOS, firmware, FRUSDRs, and Intel® RMM4. Note: You may also download files on a USB key.
1. Boot from the Intel®Server Deployment & Management DVD.
Note: The FRUSDR utility must be run for full platform management functionality.
* Other brands and names may be claimed as the property of others.
A
B
21
Install Bezel (optional)
A
B
Lock the right end of the front bezel to the rack handle.
Rotate the front bezel clockwise till the left end clicks into place.
Lock the bezel if needed.
Note: Before installing the bezel, you must install the rack handles.
B
A
A
Recessed
Edge
22
Install the Top Cover
A
Install the three screws at
the front and torque to 7-9in-lbs.
Then install the screw at the back
and torque to 7-9in-lbs.
B
Place the top cover on system and slide towards the front of the chassis until the
recessed front edge is fully engaged.

12
Reference
HG
A B C D E F
Standard Control Panel
Your system may include one of two front control panel types.
The features of each are as follows:
A. ID Button with integrated LED
B. NMI Button
C. LAN-1 Activity LED
D. System Cold Reset Button
E. System Status LED
F. Power Button with integrated LED
G. LAN-2 Activity LED
H. HDD Activity LED
Front Panel Controls and Indicators
C224 For S1200RPO
C226 For S1200RPM
Status LED ID LED
Diagnostic
LED
NIC2
USB3
USB4
NIC1
USB1
USB2
VGA
SerialA
Display
Port
S1200RPM only
Slot 6 ( PCI e_x16 )
CPU Socket
SYS FAN_4
SATA Key
Main Power
eUSB SSD
TPM
CPU Power
IO Module
Front Panel
Chassis
Intrusion
HDD LED
LCP
SATA 3 SATA 5
HSBP_I2C
Serial_B
PSAUX
DIMM_A2 DIMM_A1 DIMM_B2 DIMM_B1
SAS Module
RMM4 NIC
SATA_SGPIO
SYS FAN_1 SATA 0 IPMB CPU FAN SYS FAN_3
SYS FAN_2 SATA 2 SATA 4
RMM4 LITE
Battery
SATA 1
USB 5/6
USB 7
USB 8/9
See your Intel®Server System R1000RP Service Guide for expanded component and connection information.
Intel® Server Board S1200V3RP Component Layout

13
Reference
A complete list of accessories and spares can be found at: http://www.intel.com/p/en_US/support/ (post-production only).
Air Flow
123
Fixed System Fans
System Fan Connection
DIMM_A2 DIMM_A1 DIMM_B2 DIMM_B1
FAN 1
FAN 4
FAN 2 FAN 3

14
Reference
For system with 4 x 3.5” fixed hard drive bay:
System Cabling Diagram
Optical Drive
SAS Module Main Power
FAN 1 FAN 2 FAN 3
PS AUX
SYS FAN_1 SYS FAN_2
CPU Power
SYS FAN_3
SATA 4
Front Panel
Front Panel USB
SATA 0
SATA 2
SATA 1
SATA 3
Intel®Integrated
RAID Module
BBU
3.5”
SATA
HDD
7 Pin
SATA
1x5 Pin
SATA
Pwr
3.5”
SATA
HDD
7 Pin
SATA
1x5 Pin
SATA
Pwr
3.5”
SATA
HDD
7 Pin
SATA
1x5 Pin
SATA
Pwr
3.5”
SATA
HDD
7 Pin
SATA
1x5 Pin
SATA
Pwr
350W
Power
Supply

15
Reference
4 x 3.5" HSBP
SATA SGPIO
HDD O HDD 1 HDD 2
HDD 3
Optical Drive
I2C
HSBP_I2CSAS Module Main Power
Front Panel
Front Panel USB
FAN 1 FAN 2 FAN 3
PS AUX
SATA 4
SATA 0
SATA 2
SATA 1
SATA 3
SYS FAN_1 SYS FAN_2
350W
Power
Supply
CPU Power
SYS FAN_3
Intel®Integrated
RAID Module
BBU
For system with 4 x 3.5” hot swap hard drive bay:
System Cabling Diagram

16
Reference
8 x 2.5" HSBP
Optical Drive
HSBP_I2C
SAS Module Main Power
Front Panel
FAN 1 FAN 2 FAN 3
PS AUX
SYS FAN_1 SYS FAN_2
CPU Power
SYS FAN_3
I2C
450W
Power
Supply
PDB
Front Panel USB
SATA 0
Intel®Integrated
RAID Module
BBU
For system with 8 x 2.5” hot swap hard drive bay:
System Cabling Diagram