Intel R1000SP User manual

* 3.5" hard drive bay system as shown
Thank you for buying an Intel® Server System. The following information will help you
assemble your Intel® Server System and install components.
If you are not familiar with ESD [ElectroStatic Discharge] procedures used during
system integration, see the complete ESD procedures described in your Service Guide.
This guide and other supporting documents are located on the web at:
http://www.intel.com/p/en_US/support/.
Intel® Server System R1000SP Family
Quick Installation User's Guide
G64256-003

(This page is intentionally left blank.)

i
General Installation Process ........................................................................................................ 2
Reference ............................................................................................................................................ 11
System Overview .............................................................................................................................. 1
Preparing the System ...................................................................................................... 2
Remove the Top Cover .................................................................................................... 2
Remove the Air Duct ........................................................................................................ 2
Remove Processor Heatsink ........................................................................................ 2
Install the Processor ........................................................................................................ 3
Install Processor Heatsink ............................................................................................. 4
Install Memory Modules .................................................................................................. 4
Install Hard Drives .............................................................................................................. 5
Install Optical Drive ............................................................................................................ 7
Install the Air Duct ............................................................................................................. 7
Remove Add-in Card Riser Assembly ...................................................................... 7
Install Add-in Card .............................................................................................................. 7
Install Add-in Card Riser Assembly ........................................................................... 8
Install Rack Handles .......................................................................................................... 8
Install Intel® I/O Expansion Module (optional) ..................................................... 8
Install Intel® RAID C600 Upgrade Key (optional) ............................................... 8
Install Intel® Remote Management Module 4 (optional) ................................ 8
Install Intel® RAID Smart Battery (optional) ......................................................... 9
Replace Fixed Power Supply Module (optional) ............................................... 9
Replace Redundant Power Supply Module (optional) ..................................... 9
Replace Power Supply Module (optional) .............................................................. 9
Install Bezel (optional) .................................................................................................... 10
Install the Top Cover ........................................................................................................ 10
Finishing Up ......................................................................................................................... 10
Software ............................................................................................................................... 10
Table of Contents

ii
Warning
Read all caution and safety
statements in this document
before performing any of the
instructions. Also see the Intel
®
Server Board and Server Chassis
Safety Information document at:
http://www.intel.com/support/
motherboards/server/sb/cs-010770
.htm for complete safety information.
Warning
Installation and service
of this product is to be
performed only by
qualified service personnel
to avoid risk of injury from
electrical shock or energy
hazard.
Caution
Observe normal ESD
[Electrostatic Discharge]
procedures during system
integration to avoid possible
damage to server board and/or
other components.
Tools Required
Anti-static
wrist strap
Phillips*
screwdriver
Intel®is a registered trademark of Intel Corporation or its subsidiaries in the United States and other countries. *Other names and brands may be claimed as the
property of others. Copyright © 2012, Intel Corporation. All rights reserved.
Thermal Operation and Configuration Requirements
To keep the system operating within supported maximum thermal limits, the system must meet the following operating and configuration
guidelines:
• Ambient in-let temperature cannot exceed 35 ºC and should not remain at this maximum level for long periods of time.
Doing so may affect long term reliability of the system.
•DIMM Population on CPU: Install DIMMs the in order; Channels A, B, and C. Start with 1st DIMM slot (blue) on each channel.
•All hard drive bays must be populated. Hard drive carriers either can be populated with a hard drive or supplied drive blank.
•The air duct must be installed at all times.
•The system top-cover must be installed at all times.

System Fans
Memory Slots
Riser Slot
Server Board
Air Duct
CPU
Power Supply
Hard Drive Bays
Front Control Panel
System Features and Components
* 3.5" Hard Drive Bay system as shown
Useful Information:
• The SCU1 (4-7) port requires an Intel® RAID C600 Upgrade Key installed to be functional.
1
System Overview
Intel® Server System R1000SP Family

A
B
B
2
Remove the Top Cover
B
Remove the four screws.
Slide cover back and lift upward.
A
2
General Installation Process
The installation instructions in this section are for common components of Intel® Server System
R1000SP family.
Minimum Hardware Requirements
•Memory Type:
Minimum of one 1GB DDR3 1066/1333 MHz ECC UDIMM/RDIMM
•Processor: Intel®Xeon®processor E5-2400 product family
•Hard Disk Drives: SATA
For a complete list of compatible processors, heatsinks, and memory, see
http://www.intel.com/p/en_US/support/ (post-production only)
To avoid integration difficulties and possible board damage, your system must meet
the following minimum requirements:
1
Preparing the System
Observe normal ESD (Electrostatic Discharge)
procedures.
Place your Intel®Server System on a flat anti-static
surface to perform the following integration procedures.
Observe ESD procedures before reaching inside to make
server board connections or install components.
3
Remove the Air Duct
Remove the air duct by
lifting straight up.
IMPORTANT!
Before proceeding
further, check your
Intel®Server System
for disconnected or
loose cables and
components that
may have occurred
during shipping.
Remove Processor Heatsink
The heatsink is attached to the server board / processor socket with captive fasteners.
Lift the heatsink straight up.
A
B
C
CAUTION: The heatsink has thermal interface material (TIM) on the underside
of it. Use caution so that you do not damage the thermal interface material.
Use gloves to avoid sharp edges.
Using a #2 Phillips* screwdriver, loosen the four screws located on the
heatsink corners in a diagonal manner using the following procedure:
Using a #2 Phillips* screwdriver, start with screw 1 and loosen it by
giving it two rotations and stop. (IMPORTANT: Do not fully loosen.)
Proceed to screw 2 and loosen it by giving it two rotations and stop.
Similarly, loosen screws 3 and 4.
Repeat steps A and B by giving each screw two rotations each time
until all screws are loosened.
4
TIM
2
3
4
Chassis Front
A
B
C
1

3
General Installation Process
E. Close Load Plate and Socket Lever
Close the socket lever and ensure that
the load plate tab engages under the
socket lever when fully closed.
With your finger, push down on the
load plate as shown.
C
A
B
D. Install the Processor
CAUTION: The underside
of the processor has
components that may damage
the socket wires if installed
improperly.
DO NOT DROP processor
into the socket!
Processor must align
correctly with the socket
opening before installation.
Components
Orient the processor with the socket
so that the orientation notches
on the processor align with the
two orientation posts on the socket.
A
Install the processor as shown.
Orientation Posts
Orientation Notches
A
A
B
C
Close the load plate all
the way as shown.
Install the Processor ...continued
Cautions:
1. When opening a socket,
DO NOT TOUCH the gold
socket wires.
A. Open the
Socket Lever
Rotate the lever open all
the way.
B. Open the
Load Plate
Open the load plate as shown.
Push the lever handle down
and away from the socket
to release it.
A
B
Push the rear tab with your
finger tip to bring the front end
of the load plate up slightly.
A
B
C. Remove the Processor
Protective Cover
2. When unpacking a pro-
cessor, hold by the edges
only to avoid touching the
gold contact wires.
A
B
A
B
A
Take the processor out of
the box and remove the
protective shipping cover.
A
5Install the Processor

4
General Installation Process
7Install Memory Modules
DDR3 DIMM Memory Identification:
Other
Memory
DDR3
CAUTION: Observe normal ESD (ElectroStatic
Discharge) procedures to avoid possible damage to
system components.
DIMM notch and socket bump must align as shown below.
C
AIRFLOW
Chassis Front
2
3
1
4
A
B
TIM
D
CAUTION:
Do not
over-tighten
fasteners.
E
Note: Heatsink styles may vary.
Remove the protective film on the TIM if present.
D
CAUTION: The heatsink has thermal interface
material (TIM) on the underside of it. Use caution so
that you do not damage the thermal interface material.
Use gloves to avoid sharp edges.
E
C
A
BAlign heatsink fins to the front and back of
the chassis for correct airflow.
Airflow goes from front-to-back of chassis.
Each heatsink has four captive fasteners and
should be tightened in a diagonal manner using
the following procedure:
Using a #2 Phillips* screwdriver,
start with screw 1 and engage screw
threads by giving it two rotations
and stop. (Do not fully tighten.)
Proceed to screw 2 and engage screw
threads by giving it two rotations and
stop. Similarly, engage screws 3 and 4.
Repeat steps C and D by giving each
screw two rotations each time until
each screw is lightly tightened up to
a maximum of 8 inch-lbs torque.
6Install Processor Heatsink
Install Memory Modules ...continued
Memory Configurations and Population Order:
Intel®Server Board S1400SP
DIMM_C2 DIMM_C1
DIMM_B2 DIMM_B1 DIMM_A2 DIMM_A1
CPU Socket
Note: For additional memory configurations, see the Service Guide on the Intel®Server Deployment & Management DVD that accompanied
your Intel®Server System, or go to:
http://www.intel.com/p/en_US/support/ (post-production)
Memory sizing and configuration is supported only for qualified DIMMs approved by Intel®. For a list of supported memory, go to:
http://serverconfigurator.intel.com/sct_app.aspx (post-production)
For the best performance, a minimum of three DIMMs per CPU is recommended, populated in the blue slot of each memory channel.

5
General Installation Process
Install Memory Modules ...continued
To Install DIMMs:
CAUTION: Avoid touching contacts
when handling or installing DIMMs.
A
C
DB
E
Open both DIMM socket levers.
A
Note location of alignment notch.
B
E
IMPORTANT! Visually check that each latch is fully closed and correctly engaged with each DIMM edge slot.
D
Push down firmly on the DIMM until it snaps into place and both levers close.
C
Insert DIMM making sure the connector edge of the DIMM aligns correctly with the slot.
D
C
2.5" HDD
E
2.5" Hard Drive Carrier (For system with 2.5" hard drive bay only)
Hard Drive Numbering Diagram
Drive 0 Primary
8 x 2.5" hard drive bay as shown
A
B
Remove the drive carrier by pressing the green latch
to unlock.
Pull out the black lever and slide the carrier out.
Remove the four screws securing the plastic drive blank
from the 2.5” HDD carrier.
Disengage the plastic drive blank from the HDD carrier.
Remove the plastic drive blank from the 2.5” HDD carrier.
C
D
Install the hard disk drive using the four screws as shown. Make Sure
that the connector end of the drive matches the backplane connector.
E
With the lever open, insert the hard disk drive assembly into the chassis,
then push in the lever to lock it into place.
F
CAUTION: If you do not
install all drives, empty drive
bays must be occupied by
carriers with plastic drive
blank provided to maintain
proper system cooling.
A
B
F
0
1
2
3
4
5
67
8Install
Hard Drives

6
General Installation Process
2.5" HDD
d3
d4
2.5" HDD
Install Hard Drives ...continued
3.5" Hard Drive Carrier (For system with 3.5" hard drive bay only)
Hard Drive Numbering Diagram
Drive 0 Primary
A
B
Remove the drive carrier by pressing the green button and opening
the lever.
E
F
Slide the carrier out.
TOP
BREAK OFF TAB
BEFORE MOUTING
2.5´´ HARD DRIVE
C
Remove the four screws securing the HDD interface bracket and remove
the HDD interface bracket.
Install 2.5” Hard Drive as option:
3.5´´ HDD
D
D
Install the hard disk drive using the same four screws as shown. Make
sure the connector end of the drive matches the backplane connector.
With the lever open, insert the hard disk drive assembly into the chassis.
Push in the lever to lock it into place.
4 x 3.5” hard drive bay as shown
CAUTION: If you do not
install all drives, empty drive
bays must be occupied by
carriers with plastic drive
blank provided to maintain
proper system cooling.
d1 d4
d2 d3
Install the HDD interface bracket
from top. Secure the bracket with
three screws as shown.
Slide the 2.5” HDD into the
bracket to align the screw holes
with the right and the left rail.
Break off the tab on the
HDD interface bracket.
Secure the hard disk drive using
the four screws for 2.5” HDD.
d1
Bottom
View
TOP
BREAK OFF TAB
BEFORE MOUTING
2.5´´ HARD DRIVE
d2
TOP
BREAK OFF TAB
BEFORE MOUTING
2.5´´ HARD DRIVE
A
B
F
E
0 1 2 3
C

7
General Installation Process
12 Install Add-in Card
REMOVE Filler Panel
A
B
Add-in Card
C
Riser Connector
•Full-height PCIe Card Shown
A
B
C
CAUTION:
Observe normal ESD precautions
when installing add-in cards.
Insert add-in card until it sits in the riser connector.
Secure add-in card with screw as shown.
Note: Make sure that all empty add-in card slots have
filler panels installed.
Note: Add-in card install sequence for low-profile add-in
cards is the same.
Remove the filler panel from the add-in card slot and
remove the screw as shown.
AB
IMPORTANT NOTE: If you do not
install a device at this location,
install the optical device bay filler
panel shown below.
This is required to maintain
proper system cooling.
Rear View
of Optical
Drive
A
Install the plastic guide onto the back
of the drive and attach with two screws
as shown.
Insert the optical drive into chassis opening
and push all the way until it stops.
CConnect the cables as shown.
Optical
Device
Assembly
B
Data
Power
Optical
Drive
C
9Install Optical Drive
Riser Card
Connector
Grasp the riser assembly with
both hands and pull up to
remove from system.
CAUTION:
Place the riser
assembly
upside down to
avoid damage
to the riser card
connector.
11 Remove Add-in Card
Riser Assembly
Align the two holes on the air duct with the alignment
pins on the chassis and install the air duct into place.
Use care to avoid pinching system cables.
10 Install the Air Duct

General Installation Process
Note: Rack handles are required to install
the bezel. For detailed instructions, see the
Service Guide.
14 Install Rack Handles
8
RMM 4 NIC
Connector B
C
A
Chassis
Back
Opening
Filler
ALocate the RMM4 Lite connector close to the Riser Slot.
Carefully pick up the Intel®RMM4 Lite module, match the alignment
pin of the module and the connector on server board. Press to install.
Installing the Intel® RMM4 Lite
Push out and remove the
metal cover on the chassis
where the NIC RJ-45
receptacle will align.
A
Position the module over
the server board.
Fit the front of the
module into the back
panel slot.
Attach the module to the
server board connector.
B
Secure the module with
the two screws as
shown.
C
Installing the Intel® RMM4 NIC
RMM4 Lite
Connector
17 Install Intel® Remote Management Module 4 (optional)
Add-in Card
Slots
Hooks
13 Install Add-in Card Riser Assembly
Position the riser card edge
connector over the server
board riser socket and align
the hook of the riser with the
slot at the back of the chassis,
then press straight down into
riser socket.
I/O Connector
I/O Module
A
B
C
D
15 Install Intel® I/O Expansion Module
(optional)
A
D
B
Squeeze the sides of the filler panel to
disengage it from the server system
back panel and remove it.
Position the module over the server
board, fit the front of the module into
the back panel slot.
Secure the module with the three
screws as shown.
C
Attach the module to the server
board connector.
Note: If included, remember to install the EMI shield.
STOR_UPG_KEY
Locate the white 4-pin key,
carefully pick up the Intel® RAID
C600 Upgrade Key. Match the
key and connector orientation
and press down to install.
Install Intel® RAID C600
Upgrade Key
(optional)
16

9
General Installation Process
20 Replace Redundant Power Supply Module (optional)
Insert the power supply module into the power
supply cage and push all the way until it clicks
into place.
Using the handle, pull the module from the
chassis while pressing the green latch in the
direction shown.
Power Supply Removal Power Supply Installation
18 Install Intel® RAID Smart Battery (optional)
A
B
ALocate the BBU bracket inside the chassis. Align the tabs on the plastic battery holder
with mounting holes on the BBU bracket.
BSlide the plastic battery holder toward the rear of the system until the tabs engage with
the mounting holes in the BBU bracket.
19 Replace Fixed Power Supply Module (optional)
B
A
B
A
AInsert the power supply module into
the chassis.
A
Unsecure the three screws from the
module as shown.
Secure the module with the three screws
as shown.
B
Remove the power supply module.
B

10
General Installation Process
Network
NIC 3
NIC 4
USB
Ports
Add-in Card Slot
NIC 1
NIC 2
Power Supply Serial
Port A
Intel ®RMM4
NIC Port
(optional)
Intel ®I/O
Module
(optional)
Video
Network
NIC 1
NIC 2
USB
Ports
Intel ®RMM4
NIC Port
(optional)
Intel ®I/O
Module
(optional)
Add-in Card Slot
Video
Power Supply Serial
Port A
1. Verify the system top cover is installed.
2. Install the server into the rack using the instructions
provided with the rack mounting kit.
3. Connect your USB keyboard/mouse, video and other
I/O cables/devices as shown.
Then connect the power cord(s).
CAUTION: This system must be operated with the
TOP COVER installed to ensure proper cooling.
Before installing your operating system, you
must finish your system installation, make I/O
connections, and plug in power cord(s).
For system with S1400SP2
For system with S1400SP4
23
Finishing Up
Software •BIOS, Drivers, and Operating System Installation
24
B. Configure your RAID Controller:
If using a RAID card, use the instructions provided with the RAID controller. If using on-board RAID, you must activate RAID in the BIOS setup. See the Intel®Server System
R1000SP Service Guide for more information.
C. Install your Operating System:
Use the instructions provided with the RAID controller and with the operating system.
D. Install Operating System Drivers:
With the operating system running, insert the Intel®Server Deployment & Management DVD. If using a Microsoft Windows* operating system, the Express Installer will
autorun and allow you to select the appropriate drivers to install. On other operating systems, browse the CD folders to locate and install the driver files.
E. Install Intel® System Management Software (optional):
Download the latest version of the Intel®System Management Software from http://www.intel.com/content/www/us/en/server-management/intel-server-management.html
and use the instructions provided at that link to install the software.
A. Update the System Software:
2. Use the Wizard to access the latest versions on the Internet and update the BIOS, firmware, FRUSDRs, and Intel® RMM4. Note: You may also download files on a USB key.
1. Boot from the Intel®Server Deployment & Management DVD.
Note: The FRUSDR utility must be run for full platform management functionality.
* Other brands and names may be claimed as the property of others.
21
Install Bezel (optional)
A
B
A
B
Lock the right end of the front bezel to the rack handle.
Rotate the front bezel clockwise till the left end clicks into place.
Lock the bezel if needed.
Note: Before installing the bezel, you must install the rack handles.
22
Install the Top Cover
B
A
A
Recessed
Edge
A
Install the three screws at
the front and torque to 7-9in-lbs.
Then install the screw at the back
and torque to 7-9in-lbs.
B
Place the top cover on system and slide towards the front of the chassis until the
recessed front edge is fully engaged.

11
Reference
Standard Control Panel
HIJ
A B C D E F G
Your system may include one of two front control panel types.
The features of each are as follows:
A. ID Button with integrated LED
B. NMI Button
C. LAN-1 Activity LED
D. LAN-3 Activity LED
E. System Cold Reset Button
F. System Status LED
G. Power Button with integrated LED
H. HDD Activity LED
I. LAN-4 Activity LED
J. LAN-2 Activity LED
Front Panel Controls and Indicators
CPU Socket
SYS Fan_6
VGA
CPU FAN
Main Power
PS AUX
Slot 6 (PCI e_x16)
RMM4 LITE
TPM
DIMM_C2 DIMM_C1
DIMM_B2 DIMM_B1 DIMM_A2 DIMM_A1
SYS FAN_3 SYS FAN_4
SYS FAN_1 SYS FAN_2
SYS FAN_5
CPU Power
USB 4/5
LCP
SCU 0
Jumper Blocks
SCU 1
SATA_2-5
Storage Upgrade Key
Front Panel
eUSB SSD
HSBP_I
2
C
IPMB
USB 8
USB 6/7
Serial_B
Front VGA Port
SATA1
SATA0
NIC3
(NIC1)
USB1
USB0
NIC4
(NIC2)
USB3
USB2
NIC1
NIC2 SerialA
Status LED ID LED
Diagnostic
LED
IO Module
RMM4 NIC
SAS Module
See your Intel®Server System R1000SP Service Guide for expanded component and connection information.
NIC PORT SCHEME
S1400SP2 S1400SP4
NIC3NIC4 NIC1
NIC2
NIC1NIC2
Intel® Server Board S1400SP Component Layout

12
Reference
FAN 3 FAN 4 FAN 5FAN 1 FAN 2
Fixed System FansRedundant System Fans
1234
Air Flow
Air Flow
12345
A complete list of accessories and spares can be found at: http://www.intel.com/p/en_US/support/ (post-production only).
System Fan Connection

13
Reference
Note: To activate the port SCU1 (4-7) on the server board, a proper Intel®RAID C600 Upgrade Key must be installed.
For instructions, see Intel®RAID C600 Upgrade Key Installation Guide.
For system with 4 x 3.5” fixed hard drive bay:
System Cabling Diagram
3.5”
SATA
HDD
7 Pin
SATA
1x5 Pin
SATA
Pwr
3.5”
SATA
HDD
7 Pin
SATA
1x5 Pin
SATA
Pwr
3.5”
SATA
HDD
7 Pin
SATA
1x5 Pin
SATA
Pwr
3.5”
SATA
HDD
7 Pin
SATA
1x5 Pin
SATA
Pwr
FAN 4FAN 2 FAN 3
Optical Drive
SAS Module
SYS FAN_1 SYS FAN_2
Main Power
Front Panel
Front Panel USB
FAN 1
SCU 0
PS AUX
CPU Power
SATA 1
350W
Power
Supply
SYS FAN_3 SYS FAN_4
SYS FAN_5
Intel®Integrated
RAID Module
BBU

14
Reference
4 x 3.5" HSBP
SATA SGPIO
HDD O HDD 1 HDD 2
HDD 3
FAN 5FAN 3 FAN 4
Optical Drive
I2C
HSBP_I2C
SAS Module
Main Power
Power
Supply
Power
Supply
450W
Front Panel
Front Panel USB
FAN 1 FAN 2
SCU 0
PS AUX
CPU Power
SATA 1
SYS FAN_1 SYS FAN_2
SYS FAN_3 SYS FAN_4
SYS FAN_5
Intel®Integrated
RAID Module
BBU
Note: To activate the port SCU1 (4-7) on the server board, a proper Intel®RAID C600 Upgrade Key must be installed.
For instructions, see Intel®RAID C600 Upgrade Key Installation Guide.
For system with 4 x 3.5” hot swap hard drive bay:
System Cabling Diagram

15
Reference
8 x 2.5" HSBP
FAN 5FAN 3 FAN 4
Optical Drive
I2C
HSBP_I2C
SAS Module
Main Power
Front Panel
Front Panel USB
FAN 1 FAN 2
SCU 0
SCU 1
SATA 2-5
PS AUX
CPU Power
SATA 1
Power
Supply
450W
SYS FAN_1 SYS FAN_2
SYS FAN_3 SYS FAN_4
SYS FAN_5
Intel®Integrated
RAID Module
BBU
Note: To activate the port SCU1 (4-7) on the server board, a proper Intel®RAID C600 Upgrade Key must be installed.
For instructions, see Intel®RAID C600 Upgrade Key Installation Guide.
For system with 8 x 2.5” hot swap hard drive bay:
System Cabling Diagram

G64256-003