Intel R1000WT Series User guide

Intel
®
Server System R1000WT Product Family
System Integration and Service Guide
A Guide for Technically Qualified Assemblers of Intel identified Subassemblies/Products
Rev 2.2
April 2015
Intel® Server Boards and Systems

Intel®Server System R1000WT Product Family System Integration and Service Guide
ii Rev. 2.2
Document Revision History
Date
Revision
Number
Modifications
September 2014 1.0 First External Public Release
October 2014 1.1
All changes from previous release:
•Updated illustrations and instructions for chassis support bracket
•Added note to processor installation instructions
•Updated Processor installation illustrations.
•Added sections describing the Installation and Removal of the
optional Dual RMFBU assembly
November 2014 2.0
All changes from previous release:
•Chassis only product system integration (Chapter 1) re-written
•Updated several system illustrations showing added Support Bracket
feature
November 2014
2.1
Chapter 5 added – System Packaging Assembly Instructions.
November 2014
2.1.1
Minor clarifications made to section 1.2 preparing chassis for assembly
April 2015 2.2
•
Updated Disclaimer Statements
•Updated Table 1. Product Family Reference Collaterals list
•Chapter 1.3 – changed server board mounting screw torque from 8
in-lbs to 12 in-lbs

Disclaimers
Intel technologies’ features and benefits depend on system configuration and may require enabled hardware, software
or service activation. Learn more at Intel.com, or from the OEM or retailer.
You may not use or facilitate the use of this document in connection with any infringement or other legal analysis
concerning Intel products described herein. You agree to grant Intel a non-exclusive, royalty-free license to any patent
claim thereafter drafted which includes subject matter disclosed herein.
No license (express or implied, by estoppel or otherwise) to any intellectual property rights is granted by this document.
The products described may contain design defects or errors known as errata which may cause the product to deviate
from published specifications. Current characterized errata are available on request.
Intel disclaims all express and implied warranties, including without limitation, the implied warranties of
merchantability, fitness for a particular purpose, and non-infringement, as well as any warranty arising from course of
performance, course of dealing, or usage in trade.
Intel, the Intel logo, Xeon, and Xeon Phi are trademarks of Intel Corporation in the U.S. and/or other countries.
*Other names and brands may be claimed as the property of others.
Copyright © 2015 Intel Corporation. All Rights Reserved.

Intel®Server System R1000WT Product Family System Integration and Service Guide
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Safety Information
Important Safety Instructions
Read all caution and safety statements in this document before performing any of the instructions. See also Intel
Server Boards and Server Chassis Safety Information at
http://www.intel.com/support/motherboards/server/sb/cs-010770.htm.
Wichtige Sicherheitshinweise
Lesen Sie zunächst sämtliche Warnund Sicherheitshinweise in diesem Dokument, bevor Sie eine der
Anweisungen ausführen. Beachten Sie hierzu auch die Sicherheitshinweise zu Intel-Serverplatinen und
Servergehäusen auf der
http://www.intel.com/support/motherboards/server/sb/cs-010770.htm.
Consignes de sécurité
Lisez attention toutes les consignes de sécurité et les mises en garde indiquées dans ce document avant de suivre
toute instruction. Consultez Intel Server Boards and Server Chassis Safety Information sur le site
http://www.intel.com/support/motherboards/server/sb/cs-010770.htm.
Instrucciones de seguridad importantes
Lea todas las declaraciones de seguridad y precaución de este documento antes de realizar cualquiera de las
instrucciones. Vea Intel Server Boards and Server Chassis Safety Information en
http://www.intel.com/support/motherboards/server/sb/cs-010770.htm.
重要安全指导
在执行任何指令之前，请阅读本文档中的所有注意事项及安全声明。和/或
http://www.intel.com/support/motherboards/server/sb/cs-010770.htm 上的 Intel®Server Boards and Server
Chassis Safety Information（《Intel 服务器主板与服务器机箱安全信息》）。

Intel®Server System R1000WT Product Family System Integration and Service Guide
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Warnings
Heed safety instructions: Before working with your server product, whether you are using this guide or any other
resource as a reference, pay close attention to the safety instructions. You must adhere to the assembly
instructions in this guide to ensure and maintain compliance with existing product certifications and approvals.
Use only the described, regulated components specified in this guide. Use of other products/components will
void the UL listing and other regulatory approvals of the product and will most likely result in noncompliance with
product regulations in the region(s) in which the product is sold.
System power on/off: The power button DOES NOT turn off the system AC power. To remove power from the
system, you must unplug the AC power cord from the wall outlet. Make sure the AC power cord is unplugged
before you open the chassis, add, or remove any components.
Hazardous conditions, devices and cables: Hazardous electrical conditions may be present on power, telephone,
and communication cables. Turn off the server and disconnect the power cord, telecommunications systems,
networks, and modems attached to the server before opening it. Otherwise, personal injury or equipment damage
can result.
Electrostatic discharge (ESD) and ESD protection: ESD can damage disk drives, boards, and other parts. We
recommend that you perform all procedures in this chapter only at an ESD workstation. If one is not available,
provide some ESD protection by wearing an antistatic wrist strap attached to chassis ground - any unpainted
metal surface - on your server when handling parts.
ESD and handling boards: Always handle boards carefully. They can be extremely sensitive to ESD. Hold boards
only by their edges. After removing a board from its protective wrapper or from the server, place the board
component side up on a grounded, static free surface. Use a conductive foam pad if available but not the board
wrapper. Do not slide board over any surface.
Installing or removing jumpers: A jumper is a small plastic encased conductor that slips over two jumper pins.
Some jumpers have a small tab on top that you can grip with your fingertips or with a pair of fine needle nosed
pliers. If your jumpers do not have such a tab, take care when using needle nosed pliers to remove or install a
jumper; grip the narrow sides of the jumper with the pliers, never the wide sides. Gripping the wide sides can
damage the contacts inside the jumper, causing intermittent problems with the function controlled by that
jumper. Take care to grip with, but not squeeze, the pliers or other tool you use to remove a jumper, or you may
bend or break the pins on the board.

Intel®Server System R1000WT Product Family System Integration and Service Guide
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Preface
About this document
This document is written for system integrators and service technicians who are responsible for system assembly,
server upgrades, server repair, and component replacement.
This document is divided into two major sections. The first half of the document provides detailed instructions
on how to assemble a system from the bare chassis to a functional server. It will guide you through the
installation of system components and available accessories. The second half of the document is focused on
system service. It provides many reference diagrams used to identify all key physical features of the system. It
also provides detailed instructions for the replacement of field replaceable components.
For the latest revision of this document, go to http://www.intel.com/support
Document Organization
System Integration
Chapter 1 –– Server Building Block System Integration – provides grounds up assembly instructions for the
integration of individual server building blocks, starting with a bare chassis and installing all the system boards
and major server components, including power supply and system fans. This chapter can be skipped if the
server board and other major components are pre-installed in the system.
Chapter 2 – Essential System Component Integration and Service –provides instructions for adding essential
system components required to complete the integration of the server system. This includes installation of
Processors, Memory, Add-in Cards, and hot-swap storage devices
Chapter 3 – Options and Accessory Kit Integration and Service – provides instructions for adding and
removing various system options and available accessory option kits that maybe installed in the system
Chapter 4 – System Software Updates and Configuration - provides instructions for completing the integration
of the server system by updating the system software and navigating through the BIOS Setup screens.
Chapter 5 – System Packaging Assembly – Provides package assembly instructions when re-using the Intel
packaging the system was originally shipped in.
System Service
Chapter 6 – System Features Overview – provides a high level overview of the Intel®Server System R1000WT
product family. In this chapter, you will find a list of the server system features and illustrations identifying the
major system components.
Chapter 7 – FRU Replacement – provides guidance for the replacement of system components considered as
field replaceable units (FRUs).
Appendix A – Getting Help
Appendix B - System Cable Routing Diagrams
Appendix C - System Status LED Operating States and Definition
Appendix D – POST Code Diagnostic LED Decoder Table
Appendix E – POST Code Errors
.

Intel®Server System R1000WT Product Family System Integration and Service Guide
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Additional Information and Software
For additional information about this family of products or any of their supported accessories, refer to the
following resources available at http://www.intel.com/support.
Table 1. Product Family Reference Collaterals
For this information or software Use this Document or Software
For in-depth technical information
about this product family
•Intel®Server Board S2600WT Technical Product Specification
•Intel®Server System R1000WT Product Family Technical Product Specification
•Intel® Remote Management Module 4 (Intel® RMM4) and Integrated BMC User Guide
•Intel® Remote Management Module 4 Technical Product Specification
•Intel® I/O Expansion Modules Hardware Specification
•Intel® Server System BIOS Setup Utility Guide
•Intel® Server Platform Firmware Specification Update
•Product Safety and Regulatory Compliance - Intel® Xeon® Processor E5-2600 v3
http://www.intel.com/p/en_US/support/highlights/server/s2600wt?wapkw=s2600wt+family
For system integration instructions
and service guidance
•
Intel® Server System R1000WT product family System Integration and Service Guide
http://www.intel.com/p/en_US/support/highlights/server/s2600wt?wapkw=s2600wt+family
For server configuration guidance
and compatibility
Intel® S2600WT Product Family Configuration Guide rev 2.x
Intel®Server Configurator tool
http://serverconfigurator.intel.com
For system power budget guidance
Intel®Server Board S2600WT Product Family Power Budget Tool and Thermal Configuration
Guide
https://downloadcenter.intel.com/product/78562/Intel-Server-Board-S2600WT-Family
For system firmware updates,
onboard device drivers, and
software to manage your Intel®
Server System.
https://downloadcenter.intel.com/product/78562/Intel-Server-Board-S2600WT-Family
For a complete list of supported
processors, memory, add-in cards,
and peripherals: http://www.intel.com/p/en_US/support/category/server/s2600wt/doc_guide#
The server system has support for several software utilities which can be used to configure system parameters
and aid in troubleshooting system issues. All available utilities can be downloaded from the following Intel web
site: http://downloadcenter.intel.com/
Table 2. System Utility Software
To do this: Use this utility:
To obtain full system information Intel® SYSINFO Utility – Various OS support
To read System Event Log (SEL) Intel® SELVIEW Utility – Various OS support
Configure, Save and Restore various system options Intel® SYSCFG Utility – Various OS support
Test onboard feature functionality Intel® Platform Confidence Test (PCT) – uEFI only
To update system software
•
System Update Package (SUP) –uEFI only
•Intel® One Boot Flash Update (OFU) – Various OS Support
To configure and manage Intel® RAID Controllers Intel® RAID Web Console 2 Utility – Various OS support
Server Management Software Intel® Active System Console

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Table of Contents
1. Server Building Block System Integration...................................................................................1
1.1 Intel®Server Chassis Identification ..............................................................................................3
1.2 Prepare Chassis for Assembly .......................................................................................................3
1.3 System Assembly................................................................................................................................ 6
2. Essential System Component Installation and Service ......................................................... 15
2.1 Internal Cable Routing ................................................................................................................... 16
2.2System Cover Removal / Installation....................................................................................... 17
2.2.1 System Cover Removal.................................................................................................................. 17
2.2.2 System Cover Installation............................................................................................................. 17
2.3 Air Duct Removal / Installation................................................................................................... 18
2.3.1 Air Duct Removal.............................................................................................................................. 18
2.3.2 Air Duct Installation......................................................................................................................... 18
2.4 Processor Installation / Removal............................................................................................... 18
2.4.1 Processor Heatsink(s) Removal.................................................................................................. 19
2.4.2 Processor Installation..................................................................................................................... 20
2.4.3 Processor Heatsink Installation.................................................................................................. 23
2.4.4 Removing the Processor ............................................................................................................... 23
2.5 Memory Installation and Removal............................................................................................ 24
2.5.1 Memory Slot population requirements .................................................................................. 24
2.5.2 DDR4 DIMM Installation ................................................................................................................ 24
2.5.3 Removing Memory........................................................................................................................... 25
2.6 Storage Device Installation / Removal .................................................................................... 26
2.6.1 4 x 3.5” Front Drive Bay Storage................................................................................................ 26
2.6.2 8 x 2.5” Front Drive Bay Storage................................................................................................ 28
2.7 Riser Card Assembly - Removal / Integration / Installation ........................................... 29
2.7.1 Riser Card Assembly Removal.................................................................................................... 30
2.7.2 Mounting a Riser Card to the Riser Bracket........................................................................... 30
2.7.3 PCI Add-in Card Installation ........................................................................................................ 31
2.7.4 PCI Riser Assembly Installation.................................................................................................. 31
2.8 Rack Handles – Installation / Removal.................................................................................... 32
2.8.1 Installing the Rack Handles.......................................................................................................... 32
2.8.2 Removing the Rack Handles........................................................................................................ 32
3. Option and Accessory Kit Integration and Service ................................................................. 33
3.1 Slimline Optical Drive – Installation and Removal ............................................................. 34

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3.1.1 Slimline Optical Drive Installation............................................................................................. 34
3.1.2 Slimline Optical Drive Removal.................................................................................................. 36
3.2 Power Supply Module – Installation / Removal .................................................................. 37
3.2.1 Power Supply Module Installation............................................................................................ 37
3.2.2 Power Supply Module Removal................................................................................................. 37
3.3 Power Cord Retention Strap Installation ............................................................................... 38
3.4 Intel® SAS RAID Module Installation / Removal .................................................................. 39
3.4.1 Intel® SAS RAID Module Installation ........................................................................................ 39
3.4.2 Intel® SAS RAID Module Removal.............................................................................................. 39
3.5 Intel®I/O Expansion Module – Installation / Removal ...................................................... 40
3.5.1 Intel® I/O Expansion Module Installation............................................................................... 40
3.5.2 Intel® I/O Expansion Module Removal .................................................................................... 40
3.6 SATA RAID 5 Upgrade Key – Installation / Removal ......................................................... 41
3.6.1 Installing the SATA RAID 5 Upgrade Key............................................................................... 41
3.6.2 Removing the SATA RAID 5 Upgrade Key ............................................................................. 41
3.7 Intel®Remote Management Module 4 Lite Key – Installation / Removal.................. 42
3.7.1 Intel®RMM4 Lite Key Installation.............................................................................................. 42
3.7.2 Intel®RMM4 Lite Key Removal.................................................................................................... 42
3.8 Trusted Platform Module (TPM) Installation........................................................................ 43
3.9 Front Bezel – Installation / Removal ........................................................................................ 44
3.9.1 Bezel Snap-ons ................................................................................................................................. 44
3.9.2 Front Bezel Installation.................................................................................................................. 45
3.9.3 Front Bezel Removal....................................................................................................................... 45
3.10 Intel®RAID Maintenance Free Backup Unit (RMFBU) Installation/Removal............. 46
3.10.1 Intel®RAID Maintenance Free Backup Unit (RMFBU) Installation ................................ 46
3.10.2 Intel®RAID Maintenance Free Backup Unit (RMFBU) Removal...................................... 47
3.11 Dual Intel®RAID Maintenance Free Backup Units (RMFBU) Installation/Removal 48
3.11.1 Dual Intel®RAID Maintenance Free Backup Unit (RMFBU) Assembly Installation.48
3.11.2 Dual Intel®RAID Maintenance Free Backup Unit (RMFBU) Assembly Removal...... 50
4. System Software Updates and Configuration.......................................................................... 51
4.1 Updating the System Software Stack...................................................................................... 51
4.2 Using the BIOS Setup Utility........................................................................................................ 51
4.2.1 Entering BIOS Setup ....................................................................................................................... 51
4.2.2 No Access to the BIOS Setup Utility......................................................................................... 52
4.2.3 Navigating the BIOS Setup Utility.............................................................................................. 52
5. System Packaging Assembly ....................................................................................................... 54
5.1 Accessory Kit...................................................................................................................................... 54

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5.2 System Packaging Assembly Instructions............................................................................. 55
6. System Service - System Features Overview........................................................................... 60
6.1 System Feature Reference Diagrams....................................................................................... 60
6.1.1 Front Drive Bay Options................................................................................................................ 60
6.1.2 Control Panel Features .................................................................................................................. 61
6.1.3 Front I/O Features............................................................................................................................ 61
6.1.4 Back Panel Features........................................................................................................................ 61
6.1.5 Server Board Features.................................................................................................................... 62
6.2 System Configuration and Recovery Jumpers .................................................................... 65
6.2.1 BIOS Default Jumper Block ......................................................................................................... 65
6.2.2 Serial Port ‘A’ Configuration Jumper ....................................................................................... 65
6.2.3 Password Clear Jumper Block.................................................................................................... 66
6.2.4 Management Engine (ME) Firmware Force Update Jumper Block.............................. 66
6.2.5 BMC Force Update Jumper Block ............................................................................................. 67
6.2.6 BIOS Recovery Jumper.................................................................................................................. 67
7. System Service - FRU Replacement ........................................................................................... 69
7.1 System Fan Assembly Removal / Installation...................................................................... 70
7.1.1 System Fan Assembly Removal ................................................................................................. 70
7.1.2 System Fan Assembly Installation............................................................................................ 70
7.2 Replacing a System Fan................................................................................................................. 71
7.3 Replacing the System Battery..................................................................................................... 72
7.4 Replacing a Backplane ................................................................................................................... 73
7.4.1 Removing the Backplane .............................................................................................................. 73
7.4.2 Installing the Backplane................................................................................................................ 73
7.5 Replacing the Standard Front Control Panel ....................................................................... 74
7.5.1 Standard Front Control Panel Removal.................................................................................. 74
7.5.2 Standard Front Control Panel Installation............................................................................. 74
7.6 Replacing the Server Board ......................................................................................................... 76
7.6.1 Server Board Removal ................................................................................................................... 76
7.6.2 Server Board Installation .............................................................................................................. 78
Appendix A: Getting Help .................................................................................................................... 80
Appendix B: System Cable Routing Diagrams................................................................................. 81
Appendix C: System Status LED Operating States and Definition.............................................. 83
Appendix D: POST Code Diagnostic LED Decoder Table.............................................................. 85
Appendix E: POST Code Errors........................................................................................................... 91