MSI 5000V Master2 Series User manual

i
5000VMaster2Series
MS-9638 (V3.X)ServerBoard
G52-96381X2
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ii
CopyrightNotice
The materialinthisdocumentistheintellectual propertyof MICRO-STAR
INTERNATIONAL.Wetakeeverycareinthe preparationof thisdocument, butno
guaranteeisgivenastothecorrectnessofitscontents.Ourproductsareunder
continualimprovementand wereservetherighttomakechangeswithoutnotice.
Trademarks
Alltrademarksarethepropertiesoftheirrespectiveowners.
Intel andPentium areregisteredtrademarksofIntelCorporation.
AMD,Athlon™,Athlon™XP,Thoroughbred™,andDuron™areregistered trade-
marksofAMDCorporation.
NVIDIA, theNVIDIAlogo,DualNet,and nForceareregisteredtrademarksortrade-
marksof NVIDIACorporationin theUnitedStatesand/orothercountries.
PS/2and OS /2areregisteredtrademarks ofInternationalBusiness Machines
Corporation.
Windows 95/98/2000/NT/XPareregisteredtrademarksofMicrosoftCorporation.
Netware isaregisteredtrademarkofNovell,Inc.
Award isaregisteredtrademarkofPhoenixTechnologiesLtd.
AMI isaregistered trademarkofAmerican MegatrendsInc.
RevisionHistory
Revision RevisionHistory Date
V3.0 Firstrelease October2007
TechnicalSupport
Ifaproblemariseswithyoursystemandnosolutioncanbeobtainedfromtheuser’s
manual,pleasecontactyourplaceofpurchaseorlocaldistributor.Alternatively,
pleasetrythefollowing helpresourcesforfurtherguidance.
VisittheMSIwebsiteat http://global.msi.com.tw/index.php?
func=faqIndex forFAQ,technicalguide, BIOSupdates,driverupdates,
and otherinformation.
Contactourtechnicalstaffat http://support.msi.com.tw/.
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iii
SafetyInstructions
CAUTION: Dangerofexplosionifbatteryisincorrectlyreplaced.
Replaceonlywiththe sameorequivalenttype recommendedbythe
manufacturer.
1. Alwaysread thesafetyinstructionscarefully.
2. KeepthisUser’sManualforfuturereference.
3. Keepthisequipmentawayfromhumidity.
4. Laythisequipmentonareliableflatsurfacebeforesetting itup.
5. Theopeningsontheenclosureareforairconvectionhenceprotectstheequip-
ment fromoverheating.DONOTCOVERTHEOPENINGS.
6. Makesurethevoltageofthe powersourceandadjustproperly110/220Vbe-
foreconnectingtheequipmenttothepowerinlet.
7. Placethe powercordsuchawaythatpeoplecannotstepon it. Donotplace
anythingoverthepowercord.
8. AlwaysUnplug thePowerCordbeforeinsertinganyadd-oncardormodule.
9. All cautionsand warningsontheequipmentshouldbenoted.
10. Neverpouranyliquidintotheopeningthatcoulddamage orcauseelectrical
shock.
11. If anyofthefollowingsituationsarises,gettheequipmentcheckedbyservice
personnel:
†Thepowercordorplugisdamaged.
†Liquid haspenetratedintotheequipment.
†Theequipmenthasbeen exposedtomoisture.
†The equipmentdoesnotworkwelloryoucannotgetitworkaccordingto
User’sManual.
†Theequipmenthasdroppedand damaged.
†Theequipmenthasobvioussign of breakage.
12.DONOTLEAVETHISEQUIPMENTINANENVIRONMENTUNCONDITIONED,STOR-
AGETEMPERATUREABOVE600C(1400F),IT MAYDAMAGETHEEQUIPMENT.
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iv
FCC-BRadio Frequency Interference Statement
Thisequipmenthasbeen
tested and found tocomply
withthe limitsforaClassB
digitaldevice,pursuanttoPart
15of the FCCRules.Theselimitsaredesignedtoprovidereasonable protection
againstharmful interferenceinaresidentialinstallation.Thisequipmentgenerates,
usesand canradiateradiofrequencyenergyand,ifnotinstalledand used in accor-
dancewiththeinstructions,maycauseharmful interferencetoradiocommunications.
However,thereisno guarantee thatinterferencewill notoccurin aparticular
installation.Ifthisequipmentdoescauseharmful interferencetoradioortelevision
reception,whichcanbedeterminedbyturning theequipmentoff and on,the useris
encouragedtotrytocorrecttheinterferencebyone ormoreof themeasureslisted
below.
†Reorientorrelocatethereceiving antenna.
†Increasetheseparationbetweentheequipmentand receiver.
†Connecttheequipmentintoanoutleton acircuitdifferentfromthatto
whichthereceiverisconnected.
†Consultthedealeroranexperiencedradio/televisiontechnicianforhelp.
Notice1
Thechangesormodificationsnotexpresslyapprovedbythepartyresponsible for
compliancecould void theuser’sauthoritytooperatetheequipment.
Notice2
Shieldedinterfacecablesand A.C.powercord,ifany,mustbeusedinorderto
complywiththeemissionlimits.
VOIRLANOTICED’ INSTALLATIONAVANTDERACCORDERAURESEAU.
Micro-StarInternational
MS-9638
ThisdevicecomplieswithPart15oftheFCCRules.Operationissubjecttothe
followingtwoconditions:
(1)thisdevicemaynotcauseharmfulinterference,and
(2)thisdevicemustaccept anyinterferencereceived,includinginterferencethat
maycauseundesiredoperation.
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v
WEEE (WasteElectricaland ElectronicEquipment) Statement
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viii
CONTENTS
CopyrightNotice..............................................................................................................ii
Trademarks.......................................................................................................................ii
RevisionHistory..............................................................................................................ii
Technical Support...........................................................................................................ii
SafetyInstructions.........................................................................................................iii
FCC-B RadioFrequencyInterferenceStatement........................................................iv
WEEE(WasteElectricalandElectronicEquipment)Statement....................................v
Chapter1GettingStarted.....................................................................................1-1
MainboardSpecifications...................................................................................1-2
MainboardLayout................................................................................................1-4
Chapter2HardwareSetup....................................................................................2-1
Quick ComponentsGuide....................................................................................2-2
CPU(CentralProcessingUnit)............................................................................2-3
IntroductiontoLGA771CPU......................................................................2-3
InstallingtheLGA771CPU..........................................................................2-4
InstallingtheIntelCPUCooler.....................................................................2-5
Memory.................................................................................................................2-6
MemoryPopulationRules............................................................................2-6
InstallingMemoryModules..........................................................................2-7
PowerSupply......................................................................................................2-8
SSI24-PinSystemPowerConnector: JPWR2..........................................2-8
SSI 8-PinCPUPowerConnector:JPWR1..................................................2-8
BackPanel............................................................................................................2-9
Connectors........................................................................................................2-10
FloppyDiskDriveConnector:FDD1..........................................................2-10
ATA100HardDiskConnector:IDE1..........................................................2-10
SerialATAConnector:SATA0~SATA5(Optional)..................................2-11
SerialAttached SCSI Connector: SAS1~SAS8(Optional)....................2-11
ChassisIntrusionSwitchConnector:JCI1..............................................2-12
FanPowerConnectors:CPUFAN1/2, SYSFAN1/2/3/4/5/6..................2-12
LANLEDConnectors:JACT1,JACT2......................................................2-13
Front PanelConnector:JFP1....................................................................2-13
SerialPortConnector:COM2...................................................................2-14
FrontUSBConnector: JUSB1,JUSB2.....................................................2-14
Jumpers..............................................................................................................2-15
ClearCMOSJumper:JBAT1.....................................................................2-15
BIOSRecoveryJumper:J9......................................................................2-16
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ix
BIOSWriteProtectJumper:JBIOS1.........................................................2-16
LANJumper:JLANDIS1, JLANDIS2..........................................................2-16
Slots....................................................................................................................2-16
PCI(PeripheralComponentInterconnect)Express Slot.........................2-17
PCI(Peripheral ComponentInterconnect)Slot........................................2-17
Chapter3BIOSSetup.............................................................................................3-1
EnteringSetup.....................................................................................................3-2
Control Keys................................................................................................3-3
GettingHelp..................................................................................................3-3
General Help<F1>.......................................................................................3-3
The Menu Bar.......................................................................................................3-4
Main......................................................................................................................3-5
Advanced............................................................................................................3-8
Security..............................................................................................................3-19
Power.................................................................................................................3-20
Boot....................................................................................................................3-22
Exit......................................................................................................................3-23
AppendixAAdaptecSATARAID..........................................................................A-1
Introduction..........................................................................................................A-2
BIOSConfiguration..............................................................................................A-2
Usingthe AdaptecSATAHostRAIDOption ROM.......................................A-3
AppendixBLSISASRAID......................................................................................B-1
1.IntroductiontoIntegratedRAID......................................................................B-2
IntegratedRAIDBenefitsandFeatures.....................................................B-2
2.IntegratedMirroring Overview.......................................................................B-2
2.1Introduction...........................................................................................B-3
2.2IMFeatures...........................................................................................B-4
2.3IM/IMEDescription.................................................................................B-5
2.4IntegratedMirroring Firmware............................................................B-7
2.5Fusion-MPT Support.............................................................................B-8
3.CreatingIntegratedMirroring Volumes..........................................................B-8
3.1IMConfigurationOverview.................................................................B-9
3.2CreatingIMandIMEVolumes..............................................................B-9
3.3CreatingaSecondIMorIMEVolume.................................................B-12
3.4ManagingHotSpares..........................................................................B-13
3.5OtherConfigurationTasks..................................................................B-14
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4.IntegratedStripingOverview.......................................................................B-16
4.1Introduction.........................................................................................B-16
4.2ISFeatures.........................................................................................B-16
4.3ISDescription......................................................................................B-17
4.4IntegratedStriping Firmware..............................................................B-18
4.5Fusion-MPTSupport............................................................................B-18
5.CreatingIntegratedStriping Volumes..........................................................B-19
5.1ISConfigurationOverview.................................................................B-19
5.2CreatingISVolumes............................................................................B-19
5.3CreatingaSecondISVolume.............................................................B-21
5.4OtherConfigurationTasks..................................................................B-22
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1-1
Getting Started
Getting Started
Chapter1
Thankyouforchoosing the5000VMaster2(MS-9638
v3.X),anexcellentSSI CEB serverboardfromMSI.
Basedon theinnovative Intel 5000V &ESB2E chipsets
foroptimalsystemefficiency,the 5000VMaster2ac-
commodatesthelatest Intel Xeon processor5000
series (Harpertown/Wolfdale-DP/Clovertown/
Woodcrest) in SocketLGA771 and supportsup tosix
240-pin533/667MHzECCDDR2FB-DIMMslotstopro-
videthemaximumof 16GBmemorycapacity.
Intheentry-levelandmid-rangemarketsegment,the
5000VMaster2can provide ahigh-performancesolu-
tion fortoday’sfront-end and general purposeserver/
workstation,aswell asin the future.

MS-9638ServerBoard
1-2
MainboardSpecifications
ProcessorSupport
-Supports IntelXeon processor5000 series(Harpertown/Wolfdale-
DP/Clovertown/Woodcrest)inSocketLGA771
-SupportsIntelQuad-Core/Dual-Coreplatforms
SupportedFSB
-FSB 667/1066/1333MHz
Chipset
-Northbridge:Intel5000V
-Southbridge:IntelESB2E
MemorySupport
-6DDR2533/667FB-DIMM (FullyBufferedDual-In-line DIMM)slots
-Maximum16GB
LAN
-SupportsdualGigabitEthernetbyIntel82563EB
SAS(Optional)
-SASHostController:LSILogicSAS1068
-8-portcontrollerprovides1.5and 3Gb/stransferratesperport
andenablesIntegratedRAID0,RAID1,and RAID1Esolutionin
storage environment
SATA
-6SATAIIportssupport6SATAII devices
-Storageanddatatransfersatupto300 MB/s
IDE
-1-channelbusmasterIDEport
-SupportsATA100/66
Floppy
-1floppyport
Graphics
-XGIVolariZ7graphicsprocessor
-16MBgraphicsmemory
Slots
-1x32-bit/33MHzPCIslot
-2x100MHzPCI-Xslots(thegreen one forZCR)
-1xPCI-Expressx8slot
-1xPCI-Expressx4slot

1-3
Getting Started
Connectors
BackPanel
-1xPS/2mouse&PS/2keyboardport
-1xserialport
-1xVGAport
-2xUSB2.0ports
-2xindividualRJ-45 GigabitLANports
OnboardPinheaders
-2xUSB2.0pinheaders
-1xCOMportpinheader
-1xfrontpanelpinheader
-1xchassisintrusionpinheader
FormFactor
-SSICEB:12”X 10.5”
Mounting
-7mounting holes
System Management
H8SBMCchipandMSI iConsoleAPsupportIPMI2.0
BMCChip
-H8S200-pin
-Hosthardwareinterface:LPCinterface
-Hostsoftwareinterface:KCS interface
lMemorySize
-256 X16BitsSRAM
lKeyFeatures
-IPMI2.0compliant
-Out-of-bandLANbasedmanagement usingRMCP
-FRU/SELaccess
-Remoteout-of-bandalerts
-Eventlog
-Abilitytoupdatefirmwareinbandunattended
-Remoteaccesssecurity(MD5)
-Out-of-bandenvironmentalmonitoring andalerting
-SecureremotepowercontrolandsystemresetoverSerialor
sharedNIC(RMCP)
-SupportsonboardI2CWinbond83793G&Winbond83627 to
extendhardwaremonitorfeature
-SupportsASR(AutomaticServerRestart)
lSystemManagement
-Three SMBus2.0(I2C)
-OneSMBusforIntelESB2E
-One SMBusforIPMB
-OneSMBusforWinbond 83793G&Winbond83627
-CPUfanspeedcontroldependentonsystemtemperature
-Systemfan speedcontroldependenton systemtemperature
lSensorManagement
-Monitored Voltage:12V,5V, 3V,VBAT,VTT,Vcore,-12V
-MonitoredFan:6xSystemFan,2xCPUFan
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MS-9638ServerBoard
1-4
5000VMaster2 (MS-9638v3.X) SSICEBServerBoard
MainboardLayout
BIOS
CPUFAN1
JPWR2
J8
SYSFAN1
COM2
FBD13
FBD11
FBD02
FBD12
FBD03
FBD01
JPWR1
CPUFAN2
SATA4 SATA5
JFP1
JACT2
JSTATE1
JACT1
SAS1
SAS2
SAS3 SAS4
SAS5
SAS6
JLANDIS1
JLANDIS2
SAS7
SAS8
JUSB1
JUSB2
JCI1
JRST1
SATA3 SATA1 SATA2 SATA0
BATT
+
JBIOS1
PCI1
FDD1
J13
J9
J14 J11
J12
JBAT1
SYSFAN5 SYSFAN6
SYSFAN2
SYSFAN3
SYSFAN4
PCIE2
CPU1
CPU2
PCIX1
PCIX2
JRAID2
I/OChip
PCIE1
USB
Ports
T: Mouse
B:Keyboard
COM1
JVGA1
LAN1
LAN2
Intel
ESB2E
Intel
5000V
Intel
82563EB
XGI
Z7
IDE1
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2-1
HardwareSetup
HardwareSetup
Chapter2
Thischapterprovidesyou withtheinformation about
hardwaresetupprocedures.Whiledoingthe installation,
becarefulinholdingthecomponentsandfollowthe
installationprocedures.Forsomecomponents,ifyou
install inthewrong orientation,thecomponentswillnot
workproperly.
Useagroundedwrist strapbeforehandlingcomputer
components.Staticelectricitymaydamagethe
components.
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MS-9638ServerBoard
2-2
Quick ComponentsGuide
Important
CAUTION!!! Pleasenotethatthe CPU1/CPU2VRM&memory/southbridge
areashould berespectivelykeptunder105oCand85oC.Toensuresystem
stability,always protect the systemwithpropercooling.Otherwise,overheat-
ing maydamagethe system.
JLANDIS1/2,
p.2-16
SYSFAN5/6/2,
p.2-12
FDD1, p.2-10
COM2,
p.2-14
IDE1,
p.2-10
SATA0~5,
p.2-11
JUSB1/2,
p.2-14
J9,p.2-16
CPU, p.2-3
PCI-Class
Slots, p.2-17
JBAT1,
p.2-15
JPWR1,p.2-8
CPUFAN1/2,
p.2-12
JBIOS1,p.2-16
DDR2DIMMs, p.2-6
SYSFAN1,
p.2-12
JPWR2,p.2-8
BackPanel
I/O, p.2-9
JCI1,p.2-12
JACT2/1,
p.2-13 JFP1,p.2-13
SAS5~8,
p.2-11
SAS1~4,
p.2-11
SYSFAN3/4,
p.2-12
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2-3
HardwareSetup
CPU(CentralProcessingUnit)
Thismainboardsupportsthelatest Intel Xeon processor5000 series
(Harpertown/Wolfdale-DP/Clovertown/Woodcrest) inSocketLGA771.When
youareinstalling the CPU,makesurethatyouinstall thecoolertopreventtheCPU
fromoverheating.IfyoudonothaveaCPUcooler,contactyourdealertopurchase
and install thembeforeturning onthecomputer.
Important
1.OverheatingwillseriouslydamagetheCPUandsystem.Alwaysmake
surethecoolingfancanworkproperlytoprotecttheCPUfromoverheating.
2.Makesurethatyouapplyan evenlayerofheatsinkpaste(orthermal tape)
between theCPUand the heatsinktoenhanceheatdissipation.
3.Whilereplacing theCPU,always turnoff the powersupplyorunplugthe
powersupply spowercordfromthegroundedoutletfirsttoensurethe
safetyofCPU.
Introduction toLGA771 CPU
The pin-pad sideofLGA771CPU.
YellowtriangleisthePin1indicator
Alignment Key
Alignment Key
YellowtriangleisthePin1indicator
Thesurfaceof LGA771 CPU.
Remembertoapplysomesilicone
heattransfercompoundonitfor
betterheatdispersion.

MS-9638ServerBoard
2-4
4. Afterconfirming theCPUdirection
(indicated belowwithredcircles)
forcorrectmating,putdownthe
CPUinthesockethousing frame.
Besuretograspon the edgeof
the CPUbase. Notethatthe align-
mentkeysarematched.
Installing theLGA771CPU
1. LocatetheCPUsocket. 2. Raisetheloadleverup toitsfull extent.
3. Opentheloadplate.
5. VisuallyinspectiftheCPUisseatedwellintothesocket. Ifnot,takeout theCPU
withpureverticalmotionand reinstall.
6. Covertheloadplateontothepackage.
7. Pressdowntheload leverlightlyontotheloadplateandthen securethelever
withthehookundertheretentiontab.
Yellowtriangle
Alignment Key
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2-5
HardwareSetup
Installing theIntel CPUCooler
CPUcoolerbackplate
6.ScrewtosecuretheCPUcooler.
7.Install anotherCPUfansinkif
necessary.
5.ConnecttheCPUfanpowercordto
CPUFAN1.
Note:Ifdualprocessorsareinstalled,
connectthesecond CPUfanpower
cordtoCPUFAN2.
1.Flip overthe mainboardand locatethepositionof theCPUsockets.
2.Install thebackplatestothebackof theCPUsocketswithholesaligned.
3.InstalltheCPU(s)followingthein-
structionsonpage2-4.
4.Applysomeheatpastealloverthe
topof theCPUandplacethecooler
ontoit.
Mainboardphotosshownin this
sectionarefordemonstration only
and maydifferfromtheactual look
ofyourmainboard.
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MS-9638ServerBoard
2-6
Memory
64x2=128 pin 56x2=112 pin
DDR2
240-pin,1.8V
Memory Population Rules
Important
1.Toenable successfulsystemboot-up,alwaysinsertthe memorymodules
intothe FBD01 first(Channel0/1st).
2.Indual-channelmode,DIMMmodulesmust be ofthe sametype anddensity.
CheckthenumbersofyourDIMMmodulesandfollowthepopulationrulestoinstallthe
memory.
The mainboardprovidessix240-pin 533/667MHzECC DDR2FB-DIMMslotstosup-
port themaximumof 16GBmemorycapacity.
Channel0 Channel1
1st DIMM
(FBD01) 2nd DIMM (FBD02) 3rdDIMM (FBD03) 1stDIMM (FBD11) 2nd DIMM (FBD12) 3rdDIMM (FBD13)
V
V V
V V V
V V
V V V V
V V V V V V
FBD13
FBD12
FBD11
FBD03
FBD02
FBD01
Channel1
Channel0
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