TYAN S5393 User manual

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1
Tempest i5400PL /// S5393
Version 1.0
Copyright
Copyright © TYAN Computer Corporation, 2007. All rights reserved. No part of this
manual may be reproduced or translated without prior written consent from TYAN
Computer Corp.
Trademark
All registered and unregistered trademarks and company names contained in this manual
are property of their respective owners including, but not limited to the following.
TYAN, Tempest i5400PL are trademarks of TYAN Computer Corporation.
Intel, Seaburg, and combinations thereof are trademarks of Intel Corporation.
Phoenix, Phoenix-Award BIOS are trademarks of Phoenix Technologies.
IBM, PC, AT, and PS/2 are trademarks of IBM Corporation.
Notice
Information contained in this document is furnished by TYAN Computer Corporation and
has been reviewed for accuracy and reliability prior to printing. TYAN assumes no liability
whatsoever, and disclaims any express or implied warranty, relating to sale and/or use of
TYAN products including liability or warranties relating to fitness for a particular purpose
or merchantability. TYAN retains the right to make changes to product descriptions and/or
specifications at any time, without notice. In no event will TYAN be held liable for any
direct or indirect, incidental or consequential damage, loss of use, loss of data or other
malady resulting from errors or inaccuracies of information contained in this document.

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Table of Contents
Check the box contents! 3
Chapter 1: Introduction
1.1 Congratulations…………………………………………………………… 4
1.2 Hardware Specifications………………………………………………… 4
1.3 Software Specifications………………………………………………… 4
Chapter 2: Board Installation
2.1 Board Image……………………………………………………………… 7
2.2 Block Diagram……………………………………………………………. 8
2.3 Board Parts, Jumpers and Connectors………………………………... 9
2.4 Jumper & Connectors………………………………............................. 10
2.5 Tips on Installing Motherboard in Chassis…………………………….. 18
2.6 Installing the Processor(s)………………………………....................... 20
2.7 Installing the Memory……………………………………………………. 23
2.8 Attaching Drive Cables………………………………………………….. 25
2.9 Installing Add-in Cards………………………………............................ 27
2.10 Connecting External Devices…………………………………………… 28
2.11 Installing the Power Supply……………………………………………... 29
2.12 Finishing up………………………………………………………………. 30
Chapter 3: BIOS Setup
3.1 About the BIOS…………………………………………………………… 31
3.2 BIOS Main Menu…………………………………………………………. 33
3.3 Advanced Menu………………………………………………………….. 38
3.4 Security Menu…………………………………………………………….. 53
3.5 TPM State 54
3.6 Power Menu………………………………………………………………. 55
3.7 Boot Menu………………………………………………………………… 56
3.8 Exit Menu…………………………………………………………………. 58
Chapter 4: Diagnostics
4.1 Beep Codes………………………………………………………………. 59
4.2 Flash Utility……………………………………………………………….. 59
4.3 BIOS Post Code………………………………………………………….. 60
Appendix I: SMDC Information 63
Appendix II: How to Make a Driver Diskette 65
Glossary 67
Technical Support 73

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Check the box contents!
The retail motherboard package should contain the following:
1x S5393 motherboard
1x 34-Pin floppy drive cable
1 x Ultra DMA IDE cable
3 x Serial ATA power cable
6 x Serial ATA Cable
1x Cable set: 9-pin Serial and 25-pin Parallel
1 x USB2.0 cable (2-port)
2 x SAS cable (only with S5393WG2NR )
1 x S5393 user’s manual
1 x S5393 Quick Reference guide
1 x TYAN driver CD
1 x I/O shield
If any of these items are missing, please contact your vendor/dealer for replacement
before continuing with the installation process.

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Chapter 1: Introduction
1.1 - Congratulations
You have purchased one of the most powerful server solutions. The S5393 is a flexible
Intel®platform for multiple applications, based on the Intel®5400A (Seaburg1333) MCH
and 6321ESB chipsets.
Designed with the Dual LGA771 sockets, the S5393 supports Intel®Woodcrest /
Clovertown / Wolfdale / Harpertown ® processors and 32/64GB DDR2-533/667 FB-DIMM
memory. The S5393 is also featured with an integrated Dual Gigabit Ethernet LAN, six
SATA II ports and eight SAS/SATA ports based on the integrated LSI SAS controller. It's
ideally designed to provide a versatile server platform.
Remember to visit TYAN’s Website at http://www. tyan.com. There you can find information
on all of TYAN’s products with FAQs, online manuals and BIOS upgrades.
1.2 - Hardware Specifications
Processors
yDual LGA771 sockets
Supports up to two Intel® Xeon®
Woodcrest processors (5000/5100
Series, dual-core)
Clovertown processors (5300 series,
quad-core)
Wolfdale -DP processors (45nm, dual-
core)
Harpertown processors (45nm, quad-
core)
y1.33 / 1.06GHz FSB
yVRD 11.0
Chipset
yIntel 5400 MCH + 6321ESB Chipset
(5400A: Seaburg 1333)
ySupport for 1.33 / 1.06GHz FSB
yWinbond W83627EHG Super I/O Chip
Expansion Slots
yTwo (2) PCI Express x16 slots (x16
signal from MCH, PCI-E, Gen2)
yOne (1) PCI Express x8 slot (x8 signal
from 6321ESB)
yTwo (2) PCI-X 133/100MHz slots from
6321ESB
yOne (1) PCI 32-bit 33MHz slot
yTotal six expansion slots
Integrated I/O Interfaces
yTwo USB 2.0 headers
ySix standard/integrated SATA-II
connectors
yOne IDE and one Floppy CON
yEight SAS Ports
yOne 18-pin TYFP (TYAN Front Panel)
header
Integrated LAN controllers
yIntel Gigabit from 6321ESB (w/ dual
ports “Gilgal”, 82563EB)
yTwo RJ-45 ports with LEDs
Integrated Video Controller
yXGI Z9S
y32MB DDR2 frame buffer memory
Server Management
Baseboard Management Controller
(BMC) from daughter card M3296
yM3296, IPMI 2.0 Remote System
Mgmt card
- KIRA100 (Single Chip KVM/IP + IPMI
processor)
- 32 MB SDRAM, 8 MB Flash, 8 MB
Video RAM
- Video output over LAN (1280x1024)
- USB 2.0 High Speed Interface
- LPC, GPIO, SMBUS

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System Management
yWinbond 83793G Hardware Monitor
with PECI circuit
yCPU thermal & voltage monitor support
yFive (5) fan headers (4-pin
configuration)
Memory
yEight 240-pin DDR2 FB-DIMM sockets
y4 memory channels
ySupports ECC DIMMs
yMaximum of 64*GB DDR2-533/667
* 64GB not verified at time of print
Integrated Serial ATA II
ySix (6) SATA-II ports running at 3.0
Gb/s
yRAID 0, 1, 5, 10 support in Windows
Integrated SAS (Option for
S5393WG2NR only)
yLSI 1068E SAS Controller
yPCI-E x4 interface to 6321ESB
yEight SAS Ports (for S5393WG2NR)
yRAID 0, 1, and 1E (Mirroring
Enhanced)supported
Rear I/O
yStacked PS/2 keyboard and mouse
connectors
yStacked dual USB ports w/ one RJ-45
port for M3296
yOne Serial port
yOne VGA port
ySide by side dual GbE RJ-45 ports
Trusted Platform Management (TPM)
yInfineon SLB9635TT 1.2
- 10/100 Mbps Ethernet Interface for
direct RJ45 connection
BIOS
yPhoenixBIOS® on 8Mbit Flash ROM
ySupport APM 1.2, ACPI 2.0
ySerial Console Redirect
yPXE via Ethernet, USB device boot
yPnP, DMI 2.0, WfM 2.0 Power
Management
yUser-configurable H/W monitoring
yAuto-configuration of hard disk types
yMultiple boot options
Power
yEPS12V/SSI (24+8+8) power
connectors
Form Factor
ySSI / Extended ATX (12” x 13”)
Regulatory
yFCC Class B (DoC)
yEuropean Community CE (DoC)
1.3 - Software Specifications
For OS (operation system) support, please check with Tyan support for latest information.

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Chapter 2: Board Installation
You are now ready to install your motherboard. The mounting hole pattern of the S5393
matches the Extended ATX specification. Before continuing with installation, confirm that
your chassis supports an Extended ATX motherboard.
How to install our products right… the first time
The first thing you should do is reading this user’s manual. It contains important information
that will make configuration and setup much easier. Here are some precautions you should
take when installing your motherboard:
(1) Ground yourself properly before removing your motherboard from the antistatic
bag. Unplug the power from your computer power supply and then touch a safely
grounded object to release static charge (i.e. power supply case). For the safest
conditions, TYAN recommends wearing a static safety wrist strap.
(2) Hold the motherboard by its edges and do not touch the bottom of the board, or
flex the board in any way.
(3) Avoid touching the motherboard components, IC chips, connectors, memory
modules, and leads.
(4) Place the motherboard on a grounded antistatic surface or on the antistatic bag
that the board was shipped in.
(5) Inspect the board for damage.
The following pages include details on how to install your motherboard into your chassis,
as well as installing the processor, memory, disk drives and cables.
NOTE DO NOT APPLY POWER TO THE BOARD IF IT HAS BEEN DAMAGED

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2.1– Board Image
This picture is representative of the latest board revision available at the time of
publishing. The board you receive may or may not look exactly like the above
picture.

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2.2 – Block Diagram
S5393 Block Diagram

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2.3 – Board Parts, Jumpers and Connectors
This diagram is representative of the latest board revision available at the time of
publishing. The board you receive may not look exactly like the above diagram. For the
latest board revision, please visit: http:// www.tyan.com

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2.4 – Jumpers & Connectors
Jumper/Connector Function Settings
E50 CMOS Clear Jumper See Page 11
J87 Internal buzzer Enable/Disable Jumper See Page 12
JP5 SAS Enable/Disable Jumper
JP7/JP8 LAN Enable/Disable Jumper for 1st/2nd
LAN Port
JP15 VGA Disable Jumper
JP16 PCI-X Frequency Setting Jumper
See Page 13
J84/J85 USB2.0 Connectors See Page 14
J14 Chassis LCD Module Interface header
J15 TYFP2 Header
JP17/JP18/JP19 Switching from COM B to LCD
See Page 15
P8/P9/P12/P13/P92 4-pin x 1 FAN Connector See Page 16
J3 FAN Connector
J88 Server Signal Connector for SSI Power
Supply
JP21 Front Panel Connector
See Page 17
Jumper Legend
OPEN - Jumper OFF Without jumper cover
CLOSED - Jumper ON With jumper cover
To indicate the location of pin-1
To indicate the location of pin-1

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E50: CMOS Clear Jumper
13
Normal
(Default)
Use this jumper when you have forgotten your
system/setup password or need to clear the system BIOS
settings.
How to clear the CMOS data
-Power off system and disconnect the power supply
from the AC source
-Use jumper cap to close pin_2 and 3 for several
seconds to clear the CMOS
-Replace the jumper cap to close pin_1 and pin_2
Reconnect the power supply to the AC source and
power on the system
E50

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J87: Buzzer / External Speaker Header
1
Pin Signal Description
1 Speaker+
2 NC
3 Buzzer-
4 Speaker-
Close Pin3 and Pin4 (Default)
Enable onboard buzzer
Open Pin3 and Pin4
Disable onboard buzzer or connect to chassis speaker
JP7
JP8
JP15
JP5
JP16
J87

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JP5: SAS Enable/Disable jumper
31
(Default)
1-2 Close: SAS Enable
31
2-3 Close: SAS Disable
JP7/JP8: LAN Enable/Disable Jumper for 1st/2nd LAN Port
31
(Default)
JP7: Enable the 1st LAN port
JP8: Enable the 2nd LAN port
31
JP7: Disable the 1st LAN port
JP8: Disable the 2nd LAN port
JP15: VGA Disable Jumper
31
(Default) 1-2 close: VGA Enable
31
2-3 close: VGA Disable
JP16: PCI-X Frequency Setting Jumper
31
(Default) 1-2 close: PCI-X 133MHz
31
2-3 close: PCI-X 100MHz

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J84/J85: USB 2.0 Connectors
Signal Pin Pin Sign
a
+5VPWR 1 2 +5VP
W
USB 0- 3 4 USB 1
USB 0+ 5 6 USB 1
GND 7 8 GND
KEY 9 10 NC
Use these two headers to connect the USB devices via the enclosed USB cable.
J84
J85
JP17
JP18
JP19
J89
J14
J15

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J14: Chassis LCD Module Interface header
Signal Pin Pin Signal
+5V 1 2 SIN
KEY 3 4 GND
+5Vsb 5 6 SOUT
For supporting LCD module, there is a header on the motherboard for the interface
between motherboard and LCD module.
J15: TYFP2 Header for Barebone Product
Signal Pin Pin Sign
a
LAN1 LED + 1 2 LAN1 L
E
LAN2 LED + 3 4 LAN2 L
E
LAN3 LED + 5 6
LAN3 L
E
ID LED + 7 8 ID LE
D
ID S/W+ 9 10 ID S
W
Key 11 12
Reserve
d
JP17/JP18/JP19: switching from COM B to LCD
31
(Default) 1-2 close: J89 (COM B)
31 2-3 close: J14 (LCD)

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P8 / P9 / P12 / P13 / P92: 4-pin FAN Connector
Pin 1 2 3 4
Signal GND +12V TACH PWM
Using these headers to connect the cooling fans to the motherboard keep the system
stable and reliable.
P12
P13
P8
P9 P92
J3
JP21

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J3: FAN Connector
Signal Pin Pin Sign
a
Fan 1 TACH 1 2 Fan 6 T
A
Fan 2 TACH 3 4 Fan 7 T
A
Fan 3 TACH 5 6
Fan 8 T
A
Fan 4 TACH 7 8 Fan 9 T
A
Fan 5 TACH 9 10
Fan 10 T
A
Ground 11 12 KEY
Ground 13 14 PWM Si
g
(CPU FA
N
J88: Server Signal Connector for SSI Power Supply
Pin Signal Description
1 SMBUS Clock
2 SMBUS Data
3 SMBUS Alert
4 GND
5 3.3V Power
NOTE: This connector is optional connector for SSI power supply. For barebone, it is a
“better to have” option in the dual P platform.
JP21: Front Panel Control Header
Signal Pin Pin Sign
a
HHD LED+ 1 2 Power L
E
HDD LED- 3 4 Power L
E
GND 5 6
Power S
/
Reset SW+ 7 8 GND
GND 9 10 WLED
NMI 11 12 WLE
D
5Vsb 13 14 Key
SMBusData 15 16 GND
SMBus Clock 17 18 INTRU

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2.5 - Tips on Installing Motherboard in Chassis
Before installing your motherboard, make sure your chassis has the necessary
motherboard support studs installed. These studs are usually metal and are gold in color.
Usually, the chassis manufacturer will pre-install the support studs. If you are unsure of
stud placement, simply lay the motherboard inside the chassis and align the screw holes of
the motherboard to the studs inside the case. If there are any studs missing, you will know
right away since the motherboard will not be able to be securely installed.

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Some chassis’ include plastic studs instead of metal. Although the plastic studs are usable,
TYAN recommends using metal studs with screws that will fasten the motherboard more
securely in place.
Below is a chart detailing what the most common motherboard studs look like and how
they should be installed.

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2.6 - Installing the Processor(s)
Your brand new Tempest i5400PL (S5393) supports the latest processor technologies from
Intel. Check the TYAN website for latest processor support:
http://www.tyan.com
Processor Installation
The processor should be installed carefully. Make sure you are wearing an antistatic strap
and handle the processor as little as possible.
Follow these instructions to install your processor
1. Locate the processor socket on the motherboard and lift the protective cover off as
shown.
WARNING:
This new processor socket designed by
Intel is easily damaged. The processor
has to be installed very carefully to
prevent the contact pins in the socket
from breaking. It is strongly
recommended that the processor
installation process should be handled by
an experienced technician.
2. Pull the locking lever out of it’s locked position and let it spring into the open position.
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