Advantech SOM-5897 User manual

User Manual
SOM-5897
COM Express Compact Module

SOM-5897 User Manual ii
Copyright
The documentation and the software included with this product are copyrighted 2016
by Advantech Co., Ltd. All rights are reserved. Advantech Co., Ltd. reserves the right
to make improvements in the products described in this manual at any time without
notice. No part of this manual may be reproduced, copied, translated or transmitted
in any form or by any means without the prior written permission of Advantech Co.,
Ltd. Information provided in this manual is intended to be accurate and reliable. How-
ever, Advantech Co., Ltd. assumes no responsibility for its use, nor for any infringe-
ments of the rights of third parties, which may result from its use.
Acknowledgements
Intel is a trademark of Intel Corporation.
Microsoft Windows and MS-DOS are registered trademarks of Microsoft Corp.
All other product names or trademarks are properties of their respective owners.
Product Warranty (2 years)
Advantech warrants to you, the original purchaser, that each of its products will be
free from defects in materials and workmanship for two years from the date of pur-
chase.
This warranty does not apply to any products which have been repaired or altered by
persons other than repair personnel authorized by Advantech, or which have been
subject to misuse, abuse, accident or improper installation. Advantech assumes no
liability under the terms of this warranty as a consequence of such events.
Because of Advantech’s high quality-control standards and rigorous testing, most of
our customers never need to use our repair service. If an Advantech product is defec-
tive, it will be repaired or replaced at no charge during the warranty period. For out-
of-warranty repairs, you will be billed according to the cost of replacement materials,
service time and freight. Please consult your dealer for more details.
If you think you have a defective product, follow these steps:
1. Collect all the information about the problem encountered. (For example, CPU
speed, Advantech products used, other hardware and software used, etc.) Note
anything abnormal and list any onscreen messages you get when the problem
occurs.
2. Call your dealer and describe the problem. Please have your manual, product,
and any helpful information readily available.
3. If your product is diagnosed as defective, obtain an RMA (return merchandize
authorization) number from your dealer. This allows us to process your return
more quickly.
4. Carefully pack the defective product, a fully-completed Repair and Replacement
Order Card and a photocopy proof of purchase date (such as your sales receipt)
in a shippable container. A product returned without proof of the purchase date
is not eligible for warranty service.
5. Write the RMA number visibly on the outside of the package and ship it prepaid
to your dealer.
Part No. 2006589700 Edition 1
Printed in Taiwan August 2016

iii SOM-5897 User Manual
Declaration of Conformity
CE
This product has passed the CE test for environmental specifications. Test conditions
for passing included the equipment being operated within an industrial enclosure. In
order to protect the product from being damaged by ESD (Electrostatic Discharge)
and EMI leakage, we strongly recommend the use of CE-compliant industrial enclo-
sure products.
FCC Class B
Note: This equipment has been tested and found to comply with the limits for a Class
B digital device, pursuant to part 15 of the FCC Rules. These limits are designed to
provide reasonable protection against harmful interference in a residential installa-
tion. This equipment generates, uses and can radiate radio frequency energy and, if
not installed and used in accordance with the instructions, may cause harmful inter-
ference to radio communications. However, there is no guarantee that interference
will not occur in a particular installation. If this equipment does cause harmful interfer-
ence to radio or television reception, which can be determined by turning the equip-
ment off and on, the user is encouraged to try to correct the interference by one or
more of the following measures:
Reorient or relocate the receiving antenna.
Increase the separation between the equipment and receiver.
Connect the equipment into an outlet on a circuit different from that to which the
receiver is connected.
Consult the dealer or an experienced radio/TV technician for help.
FM
This equipment has passed the FM certification. According to the National Fire Pro-
tection Association, work sites are classified into different classes, divisions and
groups, based on hazard considerations. This equipment is compliant with the speci-
fications of Class I, Division 2, Groups A, B, C and D indoor hazards.
Technical Support and Assistance
1. Visit the Advantech website at http://support.advantech.com where you can find
the latest information about the product.
2. Contact your distributor, sales representative, or Advantech's customer service
center for technical support if you need additional assistance. Please have the
following information ready before you call:
–Product name and serial number
–Description of your peripheral attachments
–Description of your software (operating system, version, application software,
etc.)
–A complete description of the problem
–The exact wording of any error messages

SOM-5897 User Manual iv
Warnings, Cautions and Notes
Document Feedback
To assist us in making improvements to this manual, we would welcome comments
and constructive criticism. Please send all such - in writing to: support@advan-
tech.com
Packing List
Before setting up the system, check that the items listed below are included and in
good condition. If any item does not accord with the table, please contact your dealer
immediately.
SOM-5897 CPU module
1 x Heatspreader (1960073944N001)
Warning! Warnings indicate conditions, which if not observed, can cause personal
injury!
Caution! Cautions are included to help you avoid damaging hardware or losing
data. e.g.
There is a danger of a new battery exploding if it is incorrectly installed.
Do not attempt to recharge, force open, or heat the battery. Replace the
battery only with the same or equivalent type recommended by the man-
ufacturer. Discard used batteries according to the manufacturer's
instructions.
Note! Notes provide optional additional information.

v SOM-5897 User Manual
Safety Instructions
1. Read these safety instructions carefully.
2. Keep this User Manual for later reference.
3. Disconnect this equipment from any AC outlet before cleaning. Use a damp
cloth. Do not use liquid or spray detergents for cleaning.
4. For plug-in equipment, the power outlet socket must be located near the equip-
ment and must be easily accessible.
5. Keep this equipment away from humidity.
6. Put this equipment on a reliable surface during installation. Dropping it or letting
it fall may cause damage.
7. The openings on the enclosure are for air convection. Protect the equipment
from overheating. DO NOT COVER THE OPENINGS.
8. Make sure the voltage of the power source is correct before connecting the
equipment to the power outlet.
9. Position the power cord so that people cannot step on it. Do not place anything
over the power cord.
10. All cautions and warnings on the equipment should be noted.
11. If the equipment is not used for a long time, disconnect it from the power source
to avoid damage by transient overvoltage.
12. Never pour any liquid into an opening. This may cause fire or electrical shock.
13. Never open the equipment. For safety reasons, the equipment should be
opened only by qualified service personnel.
14. If one of the following situations arises, get the equipment checked by service
personnel:
The power cord or plug is damaged.
Liquid has penetrated into the equipment.
The equipment has been exposed to moisture.
The equipment does not work well, or you cannot get it to work according to
the user's manual.
The equipment has been dropped and damaged.
The equipment has obvious signs of breakage.
15. DO NOT LEAVE THIS EQUIPMENT IN AN ENVIRONMENT WHERE THE
STORAGE TEMPERATURE MAY GO BELOW -20° C (-4° F) OR ABOVE 60° C
(140° F). THIS COULD DAMAGE THE EQUIPMENT. THE EQUIPMENT
SHOULD BE IN A CONTROLLED ENVIRONMENT.
16. CAUTION: DANGER OF EXPLOSION IF BATTERY IS INCORRECTLY
REPLACED. REPLACE ONLY WITH THE SAME OR EQUIVALENT TYPE
RECOMMENDED BY THE MANUFACTURER, DISCARD USED BATTERIES
ACCORDING TO THE MANUFACTURER'S INSTRUCTIONS.
The sound pressure level at the operator's position according to IEC 704-1:1982 is
no more than 70 dB (A).
DISCLAIMER: This set of instructions is given according to IEC 704-1. Advantech
disclaims all responsibility for the accuracy of any statements contained herein.

SOM-5897 User Manual vi
Safety Precaution - Static Electricity
Follow these simple precautions to protect yourself from harm and the products from
damage.
To avoid electrical shock, always disconnect the power from your PC chassis
before you work on it. Don't touch any components on the CPU card or other
cards while the PC is on.
Disconnect power before making any configuration changes. The sudden rush
of power as you connect a jumper or install a card may damage sensitive elec-
tronic components.

vii SOM-5897 User Manual
Contents
Chapter 1 General Information ............................1
1.1 Introduction ............................................................................................... 2
1.2 Specifications ............................................................................................ 2
1.2.1 Board Information ......................................................................... 2
1.2.2 System Information ....................................................................... 2
1.2.3 Display .......................................................................................... 3
1.2.4 Expansion Interface ...................................................................... 4
1.2.5 I/O ................................................................................................. 4
1.2.6 iManager 2.0 ................................................................................. 4
1.2.7 Mechanical and Environmental Specification ............................... 4
1.3 Functional Block Diagram ......................................................................... 5
Chapter 2 Mechanical Information ......................7
2.1 Board Information...................................................................................... 8
Figure 2.1 Board Chips Identify - Front........................................ 8
Figure 2.2 Board Chips Identify - Back ........................................ 8
2.2 Mechanical Drawing.................................................................................. 9
Figure 2.3 Board Mechanical Drawing - Front ............................. 9
Figure 2.4 Board Mechanical Drawing - Back ............................. 9
2.3 Assembly Drawing .................................................................................. 10
Figure 2.5 Assembly Drawing (Reference Only) ....................... 10
Chapter 3 BIOS Operation..................................11
3.1 Entering Setup ........................................................................................ 12
3.1.1 Main Setup.................................................................................. 13
3.1.2 Advanced BIOS Features Setup................................................. 14
3.1.3 Chipset........................................................................................ 31
3.1.4 Security ....................................................................................... 49
3.1.5 Boot Settings............................................................................... 50
3.1.6 Save & Exit ................................................................................. 51
Chapter 4 S/W Introduction & Installation ........53
4.1 S/W Introduction...................................................................................... 54
4.2 Driver Installation .................................................................................... 54
4.2.1 Windows Driver Setup ................................................................ 54
4.2.2 Other OS..................................................................................... 54
4.3 Advantech iManager ............................................................................... 55
Appendix A Pin Assignment .................................57
A.1 SOM-5897 Type 6 Pin Assignment......................................................... 58
Appendix B Watchdog Timer ................................63
B.1 Programming the Watchdog Timer ......................................................... 64

SOM-5897 User Manual viii
Appendix C Programming GPIO........................... 65
C.1 GPIO Register......................................................................................... 66
Appendix D System Assignments........................ 67
D.1 System I/O Ports..................................................................................... 68
Table D.1: System I/O ports....................................................... 68
D.2 DMA Channel Assignments .................................................................... 69
Table D.2: DMA Channel Assignments ..................................... 69
D.3 Interrupt Assignments ............................................................................. 69
Table D.3: Interrupt Assignments .............................................. 69
D.4 1st MB Memory Map............................................................................... 70
Table D.4: 1st MB Memory Map ................................................ 70

Chapter 1
1General Information
This chapter gives background
information on the SOM-5897 CPU
Computer on Module.
Sections include:
Introduction
Specification
Functional Block Diagram

SOM-5897 User Manual 2
1.1 Introduction
SOM-5897 is equipped with the Intel® 6th Generation Core™/ Celeron/ Xeon prod-
uct family, which are manufactured on Intel 14nm process technology. SOM-5897
ECC/non-ECC memory supports DDR4 2133MT/s with 1.2V power design, and up to
32GB of dual channel. SOM-5897 not only supports higher memory bandwidth, but
also has 33% better battery life than previous generations. SOM-5897 is able to sup-
port 8 x PCIex1 as well as x4, x8 configurations if requested. Most important of all,
SOM-5897 adopts a 28mm low profile cooler with a TDP of 45watt at 60°C ambient
temperature (optional accessory). SOM-5897 is suitable for rich I/O applications with
high performance requirements, such as ultra sound, military, broadcasting, and
industrial automation fields.
Compared with previous generations there is 30% improvement in processor perfor-
mance and up to 50% better 3D graphics. It supports Qual/ Dual core CPU with
GT4e/ GT2, DX12, OpenGL 4.4, and OpenCL 2.0 functions. In addition, multiple dis-
plays are supported such as dual or triple displays. HDMI/DisplayPort with 4K2K res-
olution and dual channel LVDS and 16 simultaneous channels at 1920x1080 full HD
resolution are also available.
Advantech iManager was designed to satisfy a lot of embedded application require-
ments for monitoring and management of voltage and temperatures, thermal protec-
tion through processor throttling, LCD backlight on/off and brightness control and
more. Combined Advantech SUSI Access, it can remotely monitor and control
devices through the internet for easy maintenance and configuration. All Advantech
COM Express modules integrate iManager and SUSI Access.
SOM-5897 is suitable for computing intensive designs, thermally sensitive applica-
tions, graphics/media insensitive designs and I/O demanding applications.
1.2 Specifications
1.2.1 Board Information
Pin Definition: PICMG COM.0 R2.1 Type 6 pin-out definition
Form Factor: PICMG COM.0 R2.1 Compact Module 95 x 95 mm
1.2.2 System Information
CPU: 6th Gen Intel® Core Processors
Memory: 2 SODIMM socket for DDR4 2133, up to 32GB
BIOS: AMI UEFI
CPU Standard Freq. Max. Turbo Freq. Core Cache (MB) TDP(W)
i7-6820EQ 2.8GHz 3.5GHz 4 8 45
I7-6822EQ 2.0GHz 2.8GHz 4 8 25
i5-6440EQ 2.7GHz 3.4GHz 4 6 45
i5-6442EQ 1.9GHz 2.7GHz 4 6 25
i3-6100E 2.7GHz NA 2 3 35
i3-6102E 1.9GHz NA 2 3 25
G3900E 2.4GHz NA 2 2 35
E3-1505M V5 2.8GHz 3.7GHz 4 8 45
E3-1505L V5 2.0GHz 2.8GHz 4 8 25
E3-1515M V5 2.8GHz 3.7GHz 4 8 45

3 SOM-5897 User Manual
Chapter 1 General Information
Power management: Supports power saving modes including Normal /
Standby / Suspend modes. ACPI 2.0 compliant
1.2.3 Display
Graphic Core: Intel® Gen9 HD/P530/P580 Graphic supports DX12, OGL4.4,
OCL2.0, and MPEG2, HEVC/H265, VC1/WMV9 HW decode/encode/transcode
acceleration
VGA: Resolution up to 1920 x 1200
LVDS: Supports single/dual channel 18/24-bit, resolution up to 1920 x 1200 @
60 Hz

HDMI/DVI/DP: Supports 3 ports HDMI (default), DVI, or DP multiplexed.
Resolution: HDMI up to 4096 x 2160 @24Hz
DVI up to 1920 x 1080 @ 60 Hz
DP up to 4096 x 2304@60Hz 24bpp
Dual Display:
–VGA + LVDS,
–VGA + HDMI/DVI/DP,
–LVDS + HDMI/DVI/DP,
–HDMI/DVI/DP + HDMI/DVI/DP
Triple Display:
–LVDS + DP + DP/HDMI,
–LVDS + DP + VGA,
–LVDS + HDMI + HDMI,
–DP + DP + DP,
–DP + HDMI +HDMI,
–DVI + DP + HDMI,
–VGA + DP + HDMI
1.2.4 Expansion Interface
PCI Express x1: Supports default 8 PCIe x1 compliant ports to PCIe Gen3 (8.0
GT/s) specification; optionally configurable to PCIe x4 or PCIe x2. Several con-
figurable combinations may need BIOS modification. Please contact Advantech
sales or FAE for more details.
Audio Interface: Intel HD Audio interface
LPC Bus
CPU Graphics Core Base Freq. Max Freq.
i7-6820EQ Gen9 HD Graphic 350MHz 1000MHz
I7-6822EQ Gen9 HD Graphic 350MHz 1000MHz
i5-6440EQ Gen9 HD Graphic 350MHz 1000MHz
i5-6442EQ Gen9 HD Graphic 350MHz 1000MHz
i3-6100E Gen9 HD Graphic 350MHz 950MHz
i3-6102E Gen9 HD Graphic 350MHz 950MHz
G3900E Gen9 HD Graphic 350MHz 950MHz
E3-1505M V5 HD Graphic P530 350MHz 1050MHz
E3-1505L V5 HD Graphic P530 350MHz 1000MHz
E3-1515M V5 HD Graphic P580 350MHz 1000MHz

SOM-5897 User Manual 4
SMBus
I2C Bus: Up to 400KHz
SPI: Supports SPI BIOS only
1.2.5 I/O
Ethernet: Intel I219LM Gigabit LAN supports 10/100/1000 Mbps Speed
SATA: Supports 4 ports SATA Gen3 (600 Gb/s)
USB Interface: Supports 4 ports USB3.0, 8 ports USB 2.0
Serial Port: Supports 2 ports 2-wire serial port
Express Card: 2 ports
Panel Control: Supports panel backlight on/off control, brightness control
Thermal Protection: Supports thermal shutdown or CPU throttling
Watchdog Timer: 65536 level timer interval, from 0~65535 sec, multi-level,
multi-option watchdog timer
Smart Fan: 1 port on Module, 1 port down to carrier board
GPIO: 8-bit GPIO
Hardware Monitor: Vin, 5VSB, CMOS
TPM: BOM option, default not available
1.2.6 iManager 2.0
Refer to section 4.3.
1.2.7 Mechanical and Environmental Specification
Dimensions: 95 x 95 mm (3.74" x 3.74")
Power Type and Supply Voltage:
–ATX: +8.5~20V and +4.75~5.25VSB (standby power)
–AT: +8.5~20V
–CMOS Battery: +3.3V
Power Requirement:
–Test condition: SOM-5897C3-U3A1E (i3-6100U), DDR3L-1600 16GB,
WIN8.1 64-bit, under 12V and 5VSB input power supply.
–Idle: 8.5W
–Max: 41.8W (Burn-in V6.0 Pro)
Temperature Specification:
–Operating: 0 ~ 60°C (32 ~ 140°F)
–Storage: -40 ~ 85°C (-40 ~ 185°F)
Humidity Specification:
–Operating: 40°C @ 95% relative humidity, non-condensing
–Storage: 60°C @ 95% relative humidity, non-condensing

5 SOM-5897 User Manual
Chapter 1 General Information
1.3 Functional Block Diagram
Intel
Skylake-H
DDR4-2133 SODIMM
Non-ECC
Intel
QM170 / CM236
PEG x16
6 PCIe x 1
GbE
HD Audio
8 USB 2.0
4 SATA 3.0
SMBus
SPI
LPC
WDT / GPIO / I2C
RS1 / RS2 / FAN
PCIe x1
Analog RGB
Dual-CH. LVDS
DDI port 1
Dual Channel
eDP-to-LVDS
DP-to-VGA
TPM2.0
(Optional)
Intel I219LM
JTAC
(Optional)
EFI BIOS
iManager
eDP Optional
DDI port 2
2 PCIe x1
4 USB 3.0
DDI port 3 (option with VGA/LVDS)
Connector Row C,D
Connector Row A,B

SOM-5897 User Manual 6

Chapter 2
2Mechanical
Information
This chapter gives mechanical
information on the SOM-5897 CPU
Computer on Module.
Sections include:
Board Information
Mechanical Drawing
Assembly Drawing

SOM-5897 User Manual 8
2.1 Board Information
The figures below indicate the main chips on SOM-5897 Computer-on-Module.
Please be aware of these positions while designing your own carrier board to avoid
mechanical issues, as well as designing thermal solution contact points for best ther-
mal dissipation performance.
Figure 2.1 Board Chips Identify - Front
Figure 2.2 Board Chips Identify - Back
BIOS Socket
DDR4
SODIMM
On-Module
Smart FAN
connector
Processor
XDP Connector
COM Express
Connector

9 SOM-5897 User Manual
Chapter 2 Mechanical Information
2.2 Mechanical Drawing
For more details about 2D/3D models, please look on the Advantech COM support
service website http://com.advantech.com.
Figure 2.3 Board Mechanical Drawing - Front
Figure 2.4 Board Mechanical Drawing - Back
0
10.2
67.71
90.21
100.3
121
125
0
4
34.07
45.44
59.95
91 95.00
4
14.96
48.21
80
114.8
0
77
89
0
16.5
74.2
ø2.70
ø6.02

SOM-5897 User Manual 10
2.3 Assembly Drawing
Assembly order for the thermal module and COM module onto the carrier board.
Figure 2.5 Assembly Drawing (Reference Only)
There are 3 reserved screw holes for SOM-5897 to be pre-assembled with the heat
spreader.
SOM-5897
Heat Spreader
Stand off Nut
Carrier Board
Semi-Cooler

Chapter 3
3BIOS Operation
This chapter gives BIOS setup
information for the SOM-5897 CPU
Computer on Module.
Sections include:
Introduction
Entering Setup
Hot / Operation Key
Exit BIOS Setup Utility

SOM-5897 User Manual 12
3.1 Entering Setup
SOM-5897 BIOS has been stored into a flash ROM which is inserted into a BIOS
socket on the board. With the BIOS Setup program, users can modify BIOS settings
and control various system features. This chapter describes the basic navigation of
the SOM-5897 BIOS setup screens.
Advantech will have revisions for product optimization so customers can re-flash the
latest BIOS through the AFU utility. Please contact Advantech sales or FAE for more
details.
Turn on the computer and then press <ESC> or <DEL> to enter the Setup menu.
SOM-5897 BIOS has a built-in Setup program that allows users to modify the basic
system configuration. This information is stored in flash ROM so it retains the Setup
information when the power is turned off.