MSI MS-98F1 User manual

i
MS-98F1
(v1.x) Industrial Computer Board

ii
Preface MS-98F1
Copyright Notice
The material in this document is the intellectual property of MICRO-STAR IN-
TERNATIONAL. We take every care in the preparation of this document, but no
guarantee is given as to the correctness of its contents. Our products are under
continual improvement and we reserve the right to make changes without notice.
Trademarks
All trademarks are the properties of their respective owners.
Revision History
Revision Date
V1.0 2016/10
Technical Support
If a problem arises with your system and no solution can be obtained from the
user’s manual, please contact your place of purchase or local distributor. Alterna-
tively, please try the following help resources for further guidance.
Visit the MSI website for technical guide, BIOS updates, driver updates and other
information, or contact our technical sta󰘯 via http://www.msi.com/support/

iii
Preface MS-98F1
Safety Instructions
￭Always read the safety instructions carefully.
￭Keep this User’s Manual for future reference.
￭Keep this equipment away from humidity.
￭Lay this equipment on a reliable at surface before setting it up.
￭The openings on the enclosure are for air convection hence protects the
equipment from overheating. DO NOT COVER THE OPENINGS.
￭Make sure the voltage of the power source and adjust properly 110/220V
before connecting the equipment to the power inlet.
￭Place the power cord such a way that people can not step on it. Do not place
anything over the power cord.
￭Always Unplug the Power Cord before inserting any add-on card or mod-
ule.
￭All cautions and warnings on the equipment should be noted.
￭Never pour any liquid into the opening that could damage or cause electrical
shock.
￭If any of the following situations arises, get the equipment checked by ser-
vice personnel:
◯The power cord or plug is damaged.
◯Liquid has penetrated into the equipment.
◯The equipment has been exposed to moisture.
◯The equipment does not work well or you can not get it work according
to User’s Manual.
◯The equipment has dropped and damaged.
◯The equipment has obvious sign of breakage.
￭DO NOT LEAVE THIS EQUIPMENT IN AN ENVIRONMENT UNCONDI-
TIONED, STORAGE TEMPERATURE ABOVE 60oC (140oF), IT MAY DAM-
AGE THE EQUIPMENT.
警告使用者:
這是甲類資訊產品，在居住的環境中使用時，可能會造成無線電干擾，在這種情
況下，使用者會被要求採取某些適當的對策。

iv
Preface MS-98F1
Chemical Substances Information
In compliance with chemical substances regulations, such as the EU REACH
Regulation (Regulation EC No. 1907/2006 of the European Parliament and the
Council), MSI provides the information of chemical substances in products at:
http://www.msi.com/html/popup/csr/evmtprtt_pcm.html
Battery Information
European Union:
Batteries, battery packs, and accumulators should not be
disposed of as unsorted household waste. Please use the
public collection system to return, recycle, or treat them in
compliance with the local regulations.
廢電池請回收
Taiwan:
For better environmental protection, waste batteries should
be collected separately for recycling or special disposal.
California, USA:
The button cell battery may contain perchlorate material
and requires special handling when recycled or disposed
of in California.
For further information please visit:
http://www.dtsc.ca.gov/hazardouswaste/perchlorate/
Danger of explosion if battery is incorrectly replaced. Replace only with the
same or equivalent type recommended by the manufacturer.

v
Preface MS-98F1
CE Conformity
Hereby, Micro-Star International CO., LTD declares that this de-
vice is in compliance with the essential safety requirements and
other relevant provisions set out in the European Directive.
FCC-A Radio Frequency
Interference Statement
This equipment has been tested and found to comply with the
limits for a Class A digital device, pursuant to Part 15 of the
FCC Rules. These limits are designed to provide reasonable protection against
harmful interference when the equipment is operated in a commercial environ-
ment. This equipment generates, uses and can radiate radio frequency energy
and, if not installed and used in accordance with the instruction manual, may
cause harmful interference to radio communications. Operation of this equipment
in a residential area is likely to cause harmful interference, in which case the user
will be required to correct the interference at his own expense.
Notice 1
The changes or modi󰘰cations not expressly approved by the party responsible for
compliance could void the user’s authority to operate the equipment.
Notice 2
Shielded interface cables and AC power cord, if any, must be used in order to
comply with the emission limits.
VOIR LA NOTICE D’INSTALLATION AVANT DE RACCORDER AU RESEAU.
This device complies with Part 15 of the FCC Rules. Operation is subject to the
following two conditions:
1) this device may not cause harmful interference, and
2) this device must accept any interference received, including interference that
may cause undesired operation.
WEEE Statement
Under the European Union (“EU”) Directive on Waste Electrical and
Electronic Equipment, Directive 2002/96/EC, which takes e󰘯ect on
August 13, 2005, products of “electrical and electronic equipment”
cannot be discarded as municipal waste anymore and manufacturers
of covered electronic equipment will be obligated to take back such
products at the end of their useful life. MSI will comply with the prod-
uct take back requirements at the end of life of MSI-branded products that are
sold into the EU. You can return these products to local collection points.

vi
Preface MS-98F1
Japan JIS C 0950 Material
Declaration
A Japanese regulatory requirement, de󰘰ned by speci󰘰cation JIS C 0950, man-
dates that manufacturers provide material declarations for certain categories of
electronic products o󰘯ered for sale after July 1, 2006.
http://www.msi.com/html/popup/csr/cemm_jp.html
http://tw.msi.com/html/popup/csr_tw/cemm_jp.html
日本JIS C 0950材質宣言
日本工業規格JIS C 0950により、2006年7月1日以降に販売される特定分野の
電気および電子機器について、製造者による含有物質の表示が義務付けられま
す。
http://www.msi.com/html/popup/csr/cemm_jp.html
http://tw.msi.com/html/popup/csr_tw/cemm_jp.html
India RoHS
This product complies with the "India E-waste (Management and Handling) Rule
2011" and prohibits use of lead, mercury, hexavalent chromium, polybrominat-
ed biphenyls or polybrominated diphenyl ethers in concentrations exceeding
0.1 weight % and 0.01 weight % for cadmium, except for the exemptions set in
Schedule 2 of the Rule.
Turkey EEE Regulation
Conforms to the EEE Regulations of the Republic Of Turkey
Türkiye EEE yönetmeliği
Türkiye Cumhuriyeti: EEE Yönetmeliğine Uygundur
Ukraine Restriction of Hazardous
Substances
The equipment complies with requirements of the Technical Regulation, ap-
proved by the Resolution of Cabinet of Ministry of Ukraine as of December 3,
2008 № 1057, in terms of restrictions for the use of certain dangerous substances
in electrical and electronic equipment.
Україна обмеження на наявність небезпечних речовин
Обладнання відповідає вимогам Технічного регламенту щодо обмеження
використання деяких небезпечних речовин в електричному та електронному
обладнані, затвердженого постановою Кабінету Міністрів України від 3
грудня 2008 № 1057.

vii
Preface MS-98F1
Vietnam RoHS
As from December 1, 2012, all products manufactured by MSI comply with
Circular 30/2011/TT-BCT temporarily regulating the permitted limits for a number
of hazardous substances in electronic and electric products.
Việt Nam RoHS
Kể từ ngày 01/12/2012, tất cả các sản phẩm do công ty MSI sản xuất tuân thủ
Thông tư số 30/2011/TT-BCT quy định tạm thời về giới hạn hàm lượng cho phép
của một số hóa chất độc hại có trong các sản phẩm điện, điện tử"

viii
Preface MS-98F1
CONTENTS
Copyright Notice............................................................................................ ii
Trademarks ................................................................................................... ii
Revision History ............................................................................................ ii
Technical Support.......................................................................................... ii
Safety Instructions.........................................................................................iii
Chemical Substances Information ............................................................... iv
Battery Information....................................................................................... iv
CE Conformity............................................................................................... v
FCC-A Radio Frequency Interference Statement ......................................... v
WEEE Statement .......................................................................................... v
Japan JIS C 0950 Material Declaration........................................................ vi
India RoHS................................................................................................... vi
Turkey EEE Regulation................................................................................ vi
Ukraine Restriction of Hazardous Substances............................................. vi
Vietnam RoHS .............................................................................................vii
1 Overview.......................................................................................1-1
Motherboard Specications........................................................................1-2
Motherboard Layout ..................................................................................1-4
2 Hardware Setup ...........................................................................2-1
Memory ......................................................................................................2-3
Power Supply.............................................................................................2-4
Rear Panel I/O ...........................................................................................2-5
Connector...................................................................................................2-8
Jumper .....................................................................................................2-14
Slot...........................................................................................................2-16
3 BIOS Setup...................................................................................3-1
Entering Setup ...........................................................................................3-2
The Menu Bar ............................................................................................3-4
Main ...........................................................................................................3-5
Advanced ...................................................................................................3-6
Boot..........................................................................................................3-12
Security ....................................................................................................3-13
Chipset.....................................................................................................3-17
Power .......................................................................................................3-18
Save & Exit...............................................................................................3-20
Appendix WDT & GPIO ................................................................... A-1
WDT Sample Code ................................................................................... A-2
GPIO Sample Code .................................................................................. A-3

1-1-1
Thank you for choosing the MS-98F1, an excellent industrial computer
board.
Based on the innovative Intel® Celeron quad-core N3700/N3710, N3150/
N3160, N3050/N3060, N3000/N3010 SoC for optimal system e󰀩ciency,
the MS-98F1 supports up to 2 DDR3L 1066/1333/1600 MHz SO-DIMM
slots to provide the maximum of 8 GB memory capacity.
In the advanced-level and mid-range market segment, MS-98F1 provides
a high-performance solution for today’s front-end and general purpose
workstation, as well as in the future.
1Overview

1-2
Overview MS-98F1
Motherboard Specications
Processor
■Intel Celeron quad-core stepping C / stepping D CPU
■N3700/N3710
■N3150/N3160
■N3050/N3060
■N3000/N3010
Memory
■2 x DDR3L 1333/1600 MHz SO-DIMM slots
■Up to 8 GB
LAN
■2 x Intel i210(Colay i211AT) Gigabit Fast Ethernet controllers (Optional)
SATA
■1 x SATA 6Gb/s port
Audio
■Realtek ALC887VD audio codec
■1 x rear audio connector
■1 x amplier connector
Graphics
■Graphics integrated in Intel processor
Rear Panel I/O
■2 x COM ports (COM2&3)(RS232) (Optional)
■1 x COM port (COM1)(RS232/422/485)
■1 x DisplayPort
■4 x USB 3.0 ports
■2 x RJ45 GbE LAN ports (Optional)
■1 x Audio connector

1-3
Overview MS-98F1
Onboard Headers/ Connectors/ Jumpers
■1 x SATA 6Gb/s port
■1 x 4-pin SATA power connector
■2 x 10-pin USB 2.0 headers (4 ports)
■1 x system fan connector
■2 x RS232 serial port connectors (COM4 / COM6)
■1 x RS232/422/485 serial port connector (COM5)
■1 x 20-pin ATX power connector
■1 x 4-pin DC power connector
■1 x mini-PCIE connector (Colay mSATA)
■1 x mini-PCIE/3G connector
■1 x parallel port header
■1 x TPM header
■1 x eDP connector
■1 x eDP header
■2 x LVDS connectors
■2 x LVDS header
■1 x GPIO header
■1 x front panel header
■1 x S/PDIF-Out header
■5 x serial port power jumpers
■1x clear CMOS jumper
■1 x chassis intrusion header
■1 x AT/ATX select jumper
■1 x PS/2 keyboard/mouose header
Slot
■1 x mini-PCI-E / 3G
■1 x mini-PCI-E (Colay mini-SATA)
■1 x SIM Card Slot
Form Factor
■Mini-ITX: 170 mm x 170 mm
Environmental
■Operating Temperature: 0 ~ 60oC
■Storage Temperature: -20 ~ 80oC
■Humidity: 5 ~ 95% RH, non-condensing

1-4
Overview MS-98F1
Motherboard Layout
System Fan
Connector
Clear CMOS
Jumper
Chassis Intrusion
Header
COM Port
Connectors
USB
Headers
SATA
Port
GPIO
Header
Keyboard/Mouose
Connector
COM Port
Jumper
Parallel Port
Header
ATX Power
Connector
SATA Power
Connector
PCIe Slot
Back Panel
Amplier
Connector
LVDS Power
Jumper
SO-DIMM
Slots
Front Panel
Header
TPM
Header
S/PDIF-Out
Header
LVDS
Connectors
eDP
Connector
PCIe Slot
AT/ATX Jumper
COM Port
Jumper
COM Port
Jumper
eDP Power
Jumper
SIM
Holder
SPI Header
COM Port
Jumper
RJ45 GbE
LAN Port
DisplayPort USB 3.0
Port
RJ45 GbE
LAN Port
Serial
Port
(COM2)
Line-In
Line-Out
MIC
Serial
Port
(COM3)
Serial
Port
(COM1)
(Full SKU)

1-5
Overview MS-98F1
System Fan
Connector
Clear
CMOS
Jumper
Chassis Intrusion
Header
COM Port
Connectors
USB
Headers
SATA
Port
GPIO
Header
Keyboard/Mouose
Connector
COM Port
Jumper
Parallel Port
Header
DC Power
Connector
SATA Power
Connector
PCIe Slot
Back Panel
Amplier
Connector
LVDS Power
Jumper
SO-DIMM
Slots
Front Panel
Header
TPM
Header
S/PDIF-Out
Header
LVDS
Connectors
eDP
Connector
PCIe Slot
AT/ATX Jumper
eDP Power
Jumper
SIM
Holder
SPI Header
COM Port
Jumper
DisplayPort USB 3.0
Port
RJ45 GbE
LAN Port
Line-Out
MIC
Serial
Port
(COM1)
(Low Prole)

1-6
Overview MS-98F1

2-2-1
This chapter provides you with the information about hardware setup
procedures. While doing the installation, be careful in holding the com-
ponents and follow the installation procedures. For some components, if
you install in the wrong orientation, the components will not work prop-
erly.
Use a grounded wrist strap before handling computer components. Static
electricity may damage the components.
2Hardware Setup

2-2
Hardware Setup MS-98F1
Components Reference Guide
Memory..............................................................................................2-3
Power Supply....................................................................................2-4
ATX Power Connector: ATX1 .....................................................................2-4
DC Power Connector: PWR1.....................................................................2-4
SATA Power Connector: JPW1 ..................................................................2-4
Rear Panel I/O ...................................................................................2-5
Connector..........................................................................................2-8
Fan Power Connector: SYSFAN1 ..............................................................2-8
Serial ATA Connector: SATA1 ....................................................................2-8
GPIO Connector: JGPIO1..........................................................................2-8
Front Panel Header: JFP1 .........................................................................2-9
S/PDIF-Out Header: JSPD1.......................................................................2-9
Audio Amplier Header: JSPK1 .................................................................2-9
Chassis Intrusion Header: JCASE1 ...........................................................2-9
Serial Port Connector: COM5 (RS-232/-422/-485) ..................................2-10
Serial Port Connector: COM4/6 (RS-232)................................................2-10
USB 2.0 Header: JUSB1, JUSB2............................................................. 2-11
LVDS Connector: JLVDS1, JLVDS2......................................................... 2-11
Keyboard/Mouse Connector: JKB/MS1 ...................................................2-12
TPM Module Connector: JTPM1..............................................................2-12
Parallel Port Header: JLPT1 ....................................................................2-13
LVDS Power Jumper: JVDD1~JVDD2.....................................................2-13
Jumper.............................................................................................2-14
Clear CMOS Jumper: JCMOS1 ...............................................................2-14
AT/ATX Select Jumper: JATX1.................................................................2-14
Serial Port Power Jumper: JCOMP1~5 ...................................................2-15
eDP Power Jumper: JEDP_VDD1 ...........................................................2-15
Slot...................................................................................................2-16
Mini-PCIe (Peripheral Component Interconnect Express) Slot................2-16
SIM Card Holder ......................................................................................2-16
eDP Connector: EDP1 .............................................................................2-17

2-3
Hardware Setup MS-98F1
Memory
The SO-DIMM slot is intended for memory modules.
1. Locate the SO-DIMM slot. Align
the notch on the DIMM with the
key on the slot and insert the
DIMM into the slot.
2. Push the DIMM gently down-
wards until the slot levers click
and lock the DIMM in place.
3. To uninstall the DIMM, 󰘱ip the slot levers outwards and the DIMM will
be released instantly.
Important
You can barely see the golden nger if the DIMM is properly inserted in the
DIMM slot.

2-4
Hardware Setup MS-98F1
Power Supply
ATX Power Connector: ATX1
This connector is used to provide power to the motherboard.
DC Power Connector: PWR1
This DC-In connector provides power input.
SATA Power Connector: JPW1
This connector is used to provide power to SATA devices.
2.GND
3.GND
1.VCC5
4.+12V
Important
Make sure that all power connectors are connected to the power supply to ensure
stable operation of the motherboard.

2-5
Hardware Setup MS-98F1
Rear Panel I/O
RJ45 GbE
LAN Port
DisplayPort USB 3.0
Port
RJ45 GbE
LAN Port
Serial
Port
(COM2)
Line-In
Line-Out
MIC
Serial
Port
(COM3)
Serial
Port
(COM1)
(Full SKU)
DisplayPort USB 3.0
Port
RJ45 GbE
LAN Port
Line-Out
MIC
Serial
Port
(COM1)
(Low Pro󰄈le)
hRS232/422/485 Serial Port
The serial port is a 16550A high speed communications port that sends/ receives
16 bytes FIFOs. You can attach a serial mouse or other serial devices directly to
the connector.
PIN SIGNAL DESCRIPTION
1
2
3
4
5
6
7
8
9
DCD
RXD
TXD
DTR
GND
DSR
RTS
CTS
VCC_COM1
Data Carrier Detect
Receive Data
Transmit Data
Data Terminal Ready
Signal Ground
Data Set Ready
Request To Send
Clear To Send
Voltage select setting by jumper
RS232

2-6
Hardware Setup MS-98F1
PIN SIGNAL DESCRIPTION
1
2
3
4
5
6
7
8
9
422 TXD-
422 RXD+
422 TXD+
422 RXD-
GND
NC
NC
NC
NC
Transmit Data, Negative
Receive Data, Positive
Transmit Data, Positive
Receive Data, Negative
Signal Ground
No Connection
No Connection
No Connection
No Connection
RS422
PIN SIGNAL DESCRIPTION
1
2
3
4
5
6
7
8
9
485 TXD-
NC
485 TXD+
NC
GND
NC
NC
NC
NC
Transmit Data, Negative
No Connection
Transmit Data, Positive
No Connection
Signal Ground
No Connection
No Connection
No Connection
No Connection
RS485
hDisplayPort
DisplayPort is a digital display interface standard. This connector is used to con-
nect a monitor with DisplayPort inputs.
hUSB 3.0 Port
The USB 3.0 port is backward-compatible with USB 2.0 devices and supports
data transfer rate up to 5 Gbit/s (SuperSpeed).