ADLINK Technology cPCI-3620 Series User manual

Advance Technologies; Automate the World.
Manual Rev.: 1.00
Revision Date: February 16, 2016
Part No: 50-15098-2000
cPCI-3620 Series
Low-Power 3U CompactPCI®
Quad-Core Intel®Atom™ Processor Blade
User’s Manual

ii Revision History
Revision History
Revision Release Date Description of Change(s)
1.00 16/02/2016 Initial release

Preface iii
cPCI-3620
Preface
Copyright 2016 ADLINK Technology Inc.
This document contains proprietary information protected by copy-
right. All rights are reserved. No part of this manual may be repro-
duced by any mechanical, electronic, or other means in any form
without prior written permission of the manufacturer.
Disclaimer
The information in this document is subject to change without prior
notice in order to improve reliability, design, and function and does
not represent a commitment on the part of the manufacturer.
In no event will the manufacturer be liable for direct, indirect, spe-
cial, incidental, or consequential damages arising out of the use or
inability to use the product or documentation, even if advised of
the possibility of such damages.
Environmental Responsibility
ADLINK is committed to fulfill its social responsibility to global
environmental preservation through compliance with the Euro-
pean Union's Restriction of Hazardous Substances (RoHS) direc-
tive and Waste Electrical and Electronic Equipment (WEEE)
directive. Environmental protection is a top priority for ADLINK.
We have enforced measures to ensure that our products, manu-
facturing processes, components, and raw materials have as little
impact on the environment as possible. When products are at their
end of life, our customers are encouraged to dispose of them in
accordance with the product disposal and/or recovery programs
prescribed by their nation or company.
Trademarks
Product names mentioned herein are used for identification pur-
poses only and may be trademarks and/or registered trademarks
of their respective companies.

iv Preface
Conventions
Take note of the following conventions used throughout this
manual to make sure that users perform certain tasks and
instructions properly.
NOTE:
NOTE:
Additional information, aids, and tips that help users perform
tasks.
CAUTION:
Information to prevent minor physical injury, component dam-
age, data loss, and/or program corruption when trying to com-
plete a task.
WARNING:
Information to prevent serious physical injury, component
damage, data loss, and/or program corruption when trying to
complete a specific task.

Table of Contents v
cPCI-3620
Table of Contents
Revision History...................................................................... ii
Preface .................................................................................... iii
List of Figures ........................................................................ ix
List of Tables.......................................................................... xi
1 Introduction ........................................................................ 1
1.1 Overview.............................................................................. 1
1.2 Features............................................................................... 2
1.3 Model Number Decoder....................................................... 3
1.4 Package Contents ............................................................... 5
2 Specifications..................................................................... 7
2.1 cPCI-3620 Processor Blade Specifications......................... 7
2.2 cPCI-R3610(T) RTM Specifications..................................... 9
2.3 Block Diagrams.................................................................. 10
2.4 I/O Connectivity Table ....................................................... 13
2.5 Power Requirements......................................................... 14
3 Functional Description .................................................... 17
3.1 Processors......................................................................... 17
3.2 PMC/XMC.......................................................................... 19
3.3 Intel® Virtualization Technology........................................ 19
3.4 Intel® AES New Instructions.............................................. 19
3.5 Battery ............................................................................... 20
4 Board Interfaces............................................................... 21
4.1 cPCI-3620 Series Board Layout........................................ 21
4.2 cPCI-3620 Blade Assembly Layout ................................... 22

vi Table of Contents
4.3 cPCI-3620D Blade Assembly Layout................................. 23
4.4 cPCI-3620T Blade Assembly Layout................................. 24
4.5 cPCI-3620N Blade Assembly Layout................................. 25
4.6 cPCI-3620 Series Faceplate.............................................. 26
4.7 cPCI-R3610(T) RTM Board Layout.................................... 29
4.8 cPCI-R3610(T) RTM Faceplate......................................... 30
4.9 Connector Pin Assignments............................................... 31
4.10 Jumper Settings................................................................. 47
5 Getting Started .................................................................. 49
5.1 CPU and Heatsink ............................................................. 49
5.2 SATA Drive Installation...................................................... 50
5.3 PMC/XMC Card Installation............................................... 52
5.4 Installing the cPCI-3620 to the Chassis............................. 53
5.5 RTM Installation - cPCI-R3610(T)...................................... 54
6 Driver Installation.............................................................. 55
6.1 cPCI-3620 Drivers.............................................................. 55
7 Utilities ............................................................................... 57
7.1 SEMA................................................................................. 57
7.2 Preboot Execution Environment (PXE).............................. 57
7.3 Watchdog Timer................................................................. 58
8 BIOS Setup Utility ............................................................. 59
8.1 Starting the BIOS............................................................... 59
8.2 Main Setup......................................................................... 62
8.3 Advanced BIOS Setup....................................................... 65
8.3.1 Super IO Configuration..................................................66
8.3.2 Serial Port Console Redirection.....................................67
8.3.3 CPU Configuration.........................................................70
8.3.4 PPM Configuration.........................................................72
8.3.5 Thermal Configuration...................................................73
8.3.6 IDE Configuration ..........................................................74

Table of Contents vii
cPCI-3620
8.3.7 Network Stack Configuration.........................................75
8.3.8 CSM Configuration ........................................................76
8.3.9 USB Configuration.........................................................77
8.4 Chipset Configuration ........................................................ 78
8.4.1 North Bridge...................................................................78
8.4.2 South Bridge..................................................................80
8.5 Security.............................................................................. 82
8.6 Boot Settings ..................................................................... 83
8.7 Save & Exit Menu.............................................................. 84
Important Safety Instructions .............................................. 87
Getting Service...................................................................... 89

viii Table of Contents
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List of Figures ix
cPCI-3620
List of Figures
Figure 2-1: cPCI-3620 Blade Functional Block Diagram..................10
Figure 2-2: cPCI-3620D Daughter Board Functional Block Diagram11
Figure 2-3: cPCI-3620T Daughter Board Functional Block Diagram11
Figure 2-4: cPCI-R3610 RTM Functional Block Diagram ................12
Figure 4-1: cPCI-3620 Series Board Layout....................................21
Figure 4-2: cPCI-3620 Blade Assembly Layout...............................22
Figure 4-3: cPCI-3620D Blade Assembly Layout.............................23
Figure 4-4: cPCI-3620T Blade Assembly Layout.............................24
Figure 4-5: cPCI-3620N Blade Assembly Layout.............................25
Figure 4-6: cPCI-3620, cPCI-3620D/N Faceplate Layout................26
Figure 4-7: cPCI-3620T/S Faceplate Layout....................................27
Figure 4-8: cPCI-R3610(T) RTM Board Layout ...............................29
Figure 4-9: cPCI-R3610(T) RTM Faceplate.....................................30

xListofFigures
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List of Tables xi
cPCI-3620
List of Tables
Table 2-1: cPCI-3620 Processor Blade Specifications.....................7
Table 2-2: cPCI-R3610(T) RTM Specifications.................................9
Table 2-3: cPCI-3620 I/O Connectivity ...........................................13
Table 4-1: cPCI-3620 Faceplate System LED Descriptions...........28
Table 4-2: USB 2.0 Pin Definition...................................................31
Table 4-3: VGA Pin Definition.........................................................32
Table 4-4: PS/2 Keyboard/Mouse Pin Definition.............................32
Table 4-5: RJ-45 GbE Pin Definitions.............................................33
Table 4-6: LAN Status LED Definitions...........................................33
Table 4-7: RJ-45 GbE Pin Definitions.............................................34
Table 4-8: cPCI-3620D/T COM1 (DB-9) Pin Definition...................34
Table 4-9: cPCI-3620D COM1 Mode Selection Switch Settings ....35
Table 4-10: Serial ATA Connector on DB-3610L2 Pin Definition......37
Table 4-11: PMC Connector Pin Definitions.....................................38
Table 4-12: XMC Connector Pin Definition.......................................40
Table 4-13: CompactPCI J1 Connector Pin Definition......................41
Table 4-14: CompactPCI J2 Connector Pin Definition......................42
Table 4-15: cPCI-R3610(T) Serial Port Pin Header Definition..........43
Table 4-16: cPCI-R3610(T) COM2/3 (DB-9) Pin Definition ..............43
Table 4-17: COM2 Mode Selection Switch Settings.........................44
Table 4-18: COM3 Mode Selection Switch Settings.........................45
Table 4-19: Serial ATA Connector on RTM......................................46
Table 4-20: XMC VPWR Select Jumper Settings.............................47
Table 4-21: PMC V(I/O) Select Jumper Settings..............................47

xii List of Tables
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Introduction 1
cPCI-3620
1 Introduction
1.1 Overview
The ADLINK cPCI-3620 Series is a 3U CompactPCI®processor
blade featuring a quad-core Intel®Atom SoC and 4GB of soldered
DDR3L-1333 ECC.
Available in single-slot (4HP) or dual-slot (8HP) width form factors,
the cPCI-3620 Series utilizes various daughter boards to provide a
broad range of I/O functionality. Faceplate I/O on the single-slot
(4HP) version includes 1x USB 3.0, 2x RJ-45 GbE and 1x VGA
port (common to all versions). Faceplate I/O on the dual-slot (8HP)
version includes additional 2x USB 2.0, 1x COM, 1x PS/2 KB/MS
and Line-in/Line-out on the cPCI-3620D or additional 2x GbE via
MIL-STD M12 connectors and 1x COM on the cPCI-3620T.
Another dual-slot option is the cPCI-3620S with an additional XMC
site on layer 2. There is also a single-slot option that provides LED
indicators only with no I/O on the faceplate (cPCI-3620N).
Graphics support is integrated on the SoC. Storage options
include an onboard 32GB SSD (optional) and 2.5" SATA drive on
layer 2 riser card (cPCI-3620D/T). One optional PCI 32-bit/66 MHz
PCIe x1 XMC site is available on the dual-slot cPCI-3620S ver-
sion.
Rear I/O signals to J2 include 2x GbE, 1x VGA, 1x USB 2.0, 2x
COM, 1x SATA 3 Gb/s, providing for expansion with an optional
Rear Transition Module (RTM).
The cPCI-3620 is an ideal solution for transportation, military, fac-
tory automation and other industrial applications that require opti-
mal computing performance for data transfer with lower power
consumption. The ADLINK cPCI-3620 provides high manageabil-
ity, supports Satellite mode operation as a standalone blade in
peripheral slots, and features ADLINK's Smart Embedded Man-
agement Agent (SEMA) for system health monitoring.

2Introduction
1.2 Features
X3U CompactPCI blade in 4HP or 8HP width form factor
XIntel®Atom™ Processor E3845 SoC (4 cores, 2M L3 cache,
1.9 GHz)
XGraphics and memory controllers integrated in SoC
XCompatible with PICMG 2.0 CompactPCI R3.0 and PICMG 2.1
Hot Swap R2.0
X4GB single channel DDR3L-1333 soldered ECC SDRAM
X32-bit, 33/66MHz CompactPCI interface, universal V(I/O)
XSupports Satellite mode operation as a standalone blade in
peripheral slots
XOptional 32-bit, 66MHz PCIe x1 XMC site
XSupports SEMA for system health monitoring
XVGA port on faceplate switchable to rear I/O by BIOS setting
X2x GbE ports on faceplate switchable to rear I/O by BIOS set-
ting
XAdditional 2x GbE via MIL-STD M12 connectors on 8HP model
(cPCI-3620T)
X2x USB 2.0, 1x COM and 1x PS/2 KB/MS on faceplate
XLine-in and Line-out on faceplate (cPCI-3620D)
XOptional onboard 32GB SATA SSD or mSATA socket on
daughter board (mSATA by request only)
X2.5” SATA 3 Gb/s direct connector on 8HP version
(cPCI-3620D/T)

Introduction 3
cPCI-3620
1.3 Model Number Decoder
Blades
(A) Configuration Code
ZBlank = Single-slot width, 1x VGA, 1x USB 3.0, 2x GbE
ZD= Dual-slot width, 1x VGA, 1x USB 3.0, 2x GbE on layer
1; 2x USB 2.0, 1x COM (RS-232/422/485), 1x PS/2 KB/MS,
Line-in, Line-out and 2.5" SATA drive space on layer 2
DB-3610L2
ZT= Dual-slot width, 1x VGA, 1x USB 3.0, 2x GbE on layer
1; 2x GbE via MIL-STD M12 connectors, 1x COM
(RS-232/422/485), and 1x 2.5" SATA drive space on layer 2
DB-3620L2
ZS= Dual-slot width, 1x VGA, 1x USB 3.0, 2x GbE on
layer 1; XMC site on layer 2 DB-3UMC.
ZN= Single-slot width, no I/O ports on layer 1.
(B) CPU Code
ZE3845 = Quad-core Intel®Atom™ Processor E3845 SoC
(C) Memory Size Code
ZM4G = 1x 4GB DDR3L-1333 soldered ECC SDRAM
(D) Storage*
ZBlank = default with no onboard storage
ZS32 = soldered onboard 32GB SSD on daughter board
ZMS = mSATA socket on daughter board (by request)
*For more options, contact your ADLINK representative.
cPCI-3620D/ E3845 / M4G / S32
(A) (B) (C) (D)

4Introduction
RTMs
(A) Model Code
ZBlank = Dual-slot width, 50mm depth 3U RTM with 2x
COM, 1x USB 2.0, 1x SATA 3Gb/s, 1x VGA, 2x GbE
ZT= Dual-slot width, 80mm depth 3U RTM with 2 x COM, 1x
USB 2.0, 1x SATA 3Gb/s, 1x VGA, 2x GbE
NOTE:
NOTE:
2x GbE, 1x VGA and 1x SATA signals on RTM are switched
from faceplate of blade.
cPCI- R3610T
(A)

Introduction 5
cPCI-3620
1.4 Package Contents
The cPCI-3620 is packaged with the following components. If any
of the following items are missing or damaged, retain the shipping
carton and packing material and contact the dealer for inspection.
Please obtain authorization before returning any product to
ADLINK. The packing contents of cPCI-3620 Series non-standard
configurations will vary depending on customer requests.
Processor Blade
XThe cPCI-3620 Series Processor Blade
ZCPU and memory specifications will differ depending on
options selected
ZThermal module is assembled on the board
XY-cable for PS/2 combo port (8HP version only)
X2.5" SATA drive accessory pack (8HP version only)
Rear Transition Module
XcPCI-R3610: 8HP width, 50mm depth Rear Transition Mod-
ule with 2x COM, 1x USB 2.0, 2x GbE, 1x SATA, 1x VGA
XcPCI-R3610T: 8HP width, 80mm depth Rear Transition
Module with 2x COM, 1x USB 2.0, 2x GbE, 1x SATA, 1x
VGA
NOTE:
NOTE:
The contents of non-standard cPCI-3620 configurations may
vary depending on the customer’s requirements.
CAUTION:
This product must be protected from static discharge and phys-
ical shock. Never remove any of the components except at a
static-free workstation. Use the anti-static bag shipped with the
product when putting the board on a surface. Wear an
anti-static wrist strap properly grounded on one of the system's
ESD ground jacks when installing or servicing system compo-
nents.

6Introduction
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Specifications 7
cPCI-3620
2 Specifications
2.1 cPCI-3620 Processor Blade Specifications
CompactPCI®
Standards
•PICMG
®2.0 CompactPCI®Rev. 3.0
•PICMG
®2.1 Hot Swap Specification Rev. 2.0
Mechanical • Standard 3U CompactPCI®
• Board size: 100mm x 160mm
• Single slot (4HP, 20.32mm); Dual slot (8HP, 40.64mm)
Processor • Intel®Atom™ Processor E3845, quad-core, 1.91 GHz, 2MB
cache, TDP 10W
• Passive heatsink
Memory • 4GB single channel DDR3L-1333 ECC soldered memory
CompactPCI
Bus
• PCI 32-bit, 33/66MHz; 3.3V, 5V universal V I/O
• Supports operation in system slot as master or in peripheral slot
as standalone blade without connectivity to CompactPCI bus
(Satellite mode)
Gigabit
Ethernet
• Two PCIe x1 Intel®I210 Gigabit Ethernet controllers
(2 additional GbE by M12 connectors optional)
• Two egress 10/100/1000BASE-T ports on faceplate
• Two egress 10/100/1000BASE-T ports routed to rear transition
module (switched from faceplate)
Graphics • Integrated on Intel®Atom™ processor
• VGA on faceplate switchable to J2 (RTM) by BIOS setting
• Analog support up to QXGA 2560x1600 @60Hz, 32-bit
• Single display
USB • Up to three USB faceplate ports (cPCI-3620D)
Serial Ports • One RS-232/422/485 serial port on faceplate
• cPCI-3620D supports RS-485+
• cPCI-3620T supports RS-485 with flow control
PMC/XMC • One 32-bit/66MHz PMC site or PCIe x1 XMC site (cPCI-3620S)
Audio • Line-in/Line-out on faceplate by Realtek ALC262 High Definition
Audio codec (cPCI-3620D only)
Storage
Interfaces1
• Optional onboard 32GB SSD or mSATA socket on daughter
board (mSATA by request)
• One SATA 3Gb/s direct connector for 2.5" drive (8HP version)
BIOS • AMI EFI BIOS, 64Mbit SPI flash memory
Table 2-1: cPCI-3620 Processor Blade Specifications

8 Specifications
Faceplate I/O 4HP (cPCI-3620)
• 1x USB 3.0 port
• 2x 10/100/1000BASE-T Ethernet ports
• 1x VGA port
4HP (cPCI-3620N)
• LEDs only (Power, HDD, WDT, GP, GbE), no I/O
8HP (cPCI-3620D)
• 1x USB 3.0 ports
• 2x 10/100/1000BASE-T Ethernet ports
• 1x VGA port
• 2x USB 2.0 ports
• DB-9 RS-232/422/485 port
• PS/2 Keyboard/Mouse combo port
• Line-in and Line-out port
8HP (cPCI-3620T)
• 1x USB 3.0 ports
• 2x 10/100/1000BASE-T Ethernet ports
• 1x VGA port
• 2x GbE via MIL-STD M12 ports
• DB-9 RJ-45 RS-232/422/485 port
8HP (cPCI-3620S)
• 1x USB 3.0 ports
• 2x 10/100/1000BASE-T Ethernet ports
• 1x VGA port
• PMC/XMC site
OS
Compatibility
• Microsoft Windows 7 32/64-bit
• Microsoft Windows 8 32/64-bit
• Red Hat Enterprise Linux 6.5, 64-bit
• Fedora 20, 64-bit
• VxWorks 6.1 (5.5 by request)
• Other OS support by request
Environmental • Operating Temperature1:
Standard: -40°C to 70°C (fanless)
Extreme: -40°C to +85°C (forced air flow)
• Storage Temperature: -50°C to 100°C
• Humidity: 95% @60°C non-condensing
• Shock: 20G peak-to-peak, 11ms duration, non-operating
•Vibration
2: 2Grms, 5-500Hz, each axis, operating (w/o hard
drive)
EMI • EN55022
• EN50155
• FCC Class A
Table 2-1: cPCI-3620 Processor Blade Specifications