Advantech PCE-5124 User manual

PCE-5124
LGA775 Intel® Core™ 2 Quad / Core™ 2
Duo Processor-based 800/1066/1333
MHz FSB PICMG 1.3 Single Host Board
with PCIe / DDR2 / Dual GbE LAN
User Manual

PCE-5124 User Manual ii
Copyright
This document is copyrighted, 2008, by Advantech Co., Ltd. All rights
are reserved. Advantech Co., Ltd. reserves the right to make improve-
ments to the products described in this manual at any time without notice.
No part of this manual may be reproduced, copied, translated or transmit-
ted in any form or by any means without the prior written permission of
Advantech Co., Ltd. Information provided in this manual is intended to
be accurate and reliable. However, Advantech Co., Ltd. assumes no
responsibility for its use, nor for any infringements upon the rights of
third parties which may result from its use.
Acknowledgements
• AMIBIOS is a trademark of American Megatrends Inc.
• IBM and PC are trademarks of International Business Machines Cor-
poration.
•Intel,Core
TM 2 Quad, CoreTM 2 Duo are trademarks of Intel Corpora-
tion.
• WinBond is a trademark of Winbond Corporation.
• All other product names or trademarks are the properties of their
respective owners.
Part No. 2002512400 1st Edition
April 2008

iii
A Message to the Customer
Advantech Customer Services
Each and every Advantech product is built to the most exacting specifica-
tions to ensure reliable performance in the harsh and demanding condi-
tions typical of industrial environments. Whether your new Advantech
equipment is destined for the laboratory or the factory floor, you can be
assured that your product will provide the reliability and ease of operation
for which the name Advantech has come to be known.
Your satisfaction is our primary concern. Here is a guide to Advantech’s
customer services. To ensure you get the full benefit of our services,
please follow the instructions below carefully.
Technical Support
We want you to get the maximum performance from your products. So if
you run into technical difficulties, we are here to help. For the most fre-
quently asked questions, you can easily find answers in your product doc-
umentation. These answers are normally a lot more detailed than the ones
we can give over the phone.
So please consult this manual first. If you still cannot find the answer,
gather all the information or questions that apply to your problem, and
with the product close at hand, call your dealer. Our dealers are well
trained and ready to give you the support you need to get the most from
your Advantech products. In fact, most problems reported are minor and
are able to be easily solved over the phone.
In addition, free technical support is available from Advantech engineers
every business day. We are always ready to give advice on application
requirements or specific information on the installation and operation of
any of our products.

PCE-5124 User Manual iv
Certifications
This device complies with the requirements in part 15 of the FCC rules:
Operation is subject to the following two conditions:
• This device may not cause harmful interference
• This device must accept any interference received, including interfer-
ence that may cause undesired operation
This equipment has been tested and found to comply with the limits for a
Class A digital device, pursuant to Part 15 of the FCC Rules. These limits
are designed to provide reasonable protection against harmful interfer-
ence when the equipment is operated in a commercial environment. This
equipment generates, uses, and can radiate radio frequency energy and, if
not installed and used in accordance with the instruction manual, may
cause harmful interference to radio communications. Operation of this
device in a residential area is likely to cause harmful interference in
which case the user will be required to correct the interference at his/her
own expense. The user is advised that any equipment changes or modifi-
cations not expressly approved by the party responsible for compliance
would void the compliance to FCC regulations and therefore, the user's
authority to operate the equipment.
Caution! There is a danger of a new battery exploding if
it is incorrectly installed. Do not attempt to
recharge, force open, or heat the battery.
Replace the battery only with the same or
equivalent type recommended by the manufac-
turer. Discard used batteries according to the
manufacturer’s instructions.

v
Memory Compatibility
Network Feature Comparison
Table 1.1: PCE-5124 Memory Tested for Compatibility
Brand Size Speed Type ECC Vendor
PN Advantech PN Memory
Transcend
512
MB DDR 2 667 DDR2 N 78.91G
92.420 N/A ELPIDA E5108AG-6E-E
(64x8)
1
GB DDR 2 667 DDR2 N 78.01G
92.420 N/A ELPIDA E5108AGBG-
6E-E (64x8)
512
MB DDR 2 667 DDR2 N TS64M
LQ64V
6J
96D2-
512M667N
N-TR
SEC K4T51083QC
ZCE6 (64x8)
512
MB DDR 2 667 DDR2 N TS64M
LQ64V
6J
96D2-
512M667N
N-TR
Micron 5XB32D9DCL
(64x8)
1
GB DDR 2 667 DDR2 N TS2QN
J23450
-6S
96D2-
1G667NN-
TR
SEC K4T51083QE
ZCE6 (64x8)
2
GB DDR 2 667 DDR2 N TS256
MLQ64
V6U N/A Micron 7HE12 D9HNL
(128x8)
1
GB DDR 2 800 DDR2 N TS128
MLQ64
V8J N/A ProMOS
V59C1512804QBF25
(64x8)
2
GB DDR 2 667 DDR2 N TS256
MLQ64
V6U N/A SAMSUNG
K4T1G084QA-ZCE6
(128x8)
DSL
1
GB DDR 2 667 DDR2 N N/A N/A ELPIDA E5108AGBG-
6E-E (64x8)
1
GB DDR 2 800 DDR2 N N/A N/A ELPIDA E5108AHSE-
8E-E (64x8)
Kingston
2
GB DDR 2 667 DDR2 N KVR66
7D2N5/
2G N/A Micron 7KE12 D9HNL
(128x8)
1
GB DDR 2 800 DDR2 N KVR80
0D2N5/
1G N/A ELPIDA E5108AHSE-
8E-E (64x8)
Table 1.2: PCE-5124 comparison table
LAN/Model PCE-5124G2 PCE-5124VG
LAN1: Intel 82566DM Yes Yes
LAN2: Intel 82573V Yes No

PCE-5124 User Manual vi
Product Warranty
Advantech warrants to you, the original purchaser, that each of its prod-
ucts will be free from defects in materials and workmanship for two years
from the date of purchase.
This warranty does not apply to any products which have been repaired or
altered by persons other than repair personnel authorized by Advantech,
or which have been subject to misuse, abuse, accident or improper instal-
lation. Advantech assumes no liability under the terms of this warranty as
a consequence of such events.
If an Advantech product is defective, it will be repaired or replaced at no
charge during the warranty period. For out-of-warranty repairs, you will
be billed according to the cost of replacement materials, service time and
freight. Please consult your dealer for more details.
If you think you have a defective product, follow these steps:
1. Collect all the information about the problem encountered. (For
example, type of PC, CPU speed, Advantech products used, other
hardware and software used, etc.) Note anything abnormal and list
any on-screen messages you get when the problem occurs.
2. Call your dealer and describe the problem. Please have your man-
ual, product, and any helpful information readily available.
3. If your product is diagnosed as defective, obtain an RMA (return
material authorization) number from your dealer. This allows us to
process your return more quickly.
4. Carefully pack the defective product, a fully-completed Repair and
Replacement Order Card and a photocopy proof of purchase date
(such as your sales receipt) in a shippable container. A product
returned without proof of the purchase date is not eligible for war-
ranty service.
5. Write the RMA number visibly on the outside of the package and
ship it prepaid to your dealer.

vii
Initial Inspection
Before you begin installing your motherboard, please make sure that the
following materials have been shipped:
If any of these items are missing or damaged, contact your distributor or
sales representative immediately. We have carefully inspected the PCE-
5124 mechanically and electrically before shipment. It should be free of
marks and scratches and in perfect working order upon receipt. As you
unpack the PCE-5124, check it for signs of shipping damage. (For exam-
ple, damaged box, scratches, dents, etc.) If it is damaged or it fails to meet
the specifications, notify our service department or your local sales repre-
sentative immediately. Also notify the carrier. Retain the shipping carton
and packing material for inspection by the carrier. After inspection, we
will make arrangements to repair or replace the unit.
• 1 PCE-5124 PICMG 1.3 Single Host Board
• 1 PCE-5124 startup manual P/N: 2002512410
• 1 CD with utility P/N: 2062512400
• 1 FDD cable P/N: 1700340640
• 1 User note for full-sized CPU card P/N: 2002721020
• 2 Serial ATA HDD data cable P/N: 1700003194
• 2 Serial ATA HDD power cable P/N: 1703150102
• 1 COM + printer ports cable kit P/N: 1701260305
• 1 4-port USB cable kit P/N: 1700008461
• Keyboard and mouse Y cable P/N: 1700060202
• 1 jumper package P/N: 9689000068
• 1 warranty card P/N: 2190000902

PCE-5124 User Manual viii

ix Table of Contents
Contents
Chapter 1 Hardware Configuration.................................2
1.1 Introduction....................................................................... 2
1.2 Features & Benifits ........................................................... 3
1.3 Specifications.................................................................... 4
1.3.1 System.............................................................................4
1.3.2 Memory........................................................................... 4
1.3.3 Input/Output.................................................................... 5
1.3.4 Graphics..........................................................................5
1.3.5 Ethernet LAN.................................................................. 5
1.3.6 Industrial features ...........................................................5
1.3.7 Mechanical and environmental specifications................ 6
1.4 Jumpers and Connectors.................................................... 6
Table 1.1:Jumper list....................................................... 6
Table 1.2:Connector list.................................................. 7
1.5 Board Layout: Jumper and Connector Locations.............. 9
Figure 1.1:Jumper and connector locations....................9
1.6 PCE-5124 Block Diagram............................................... 10
Figure 1.2:PCE-5124 block diagram............................10
1.7 Safety Precautions.......................................................... 11
1.8 Jumper Settings............................................................... 12
1.8.1 How to set jumpers ....................................................... 12
1.8.2 CMOS clear (CMOS1) ................................................. 12
Table 1.3:CMOS (CMOS1).......................................... 12
1.8.3 Watchdog timer output (JWDT1)................................. 14
Table 1.4:Watchdog timer output (JWDT1)................. 14
1.8.4 COM2 RS-232/422/485 mode selector (JESTCOM2). 16
Figure 1.3: COM2 RS-232/422/485 jumper setting..... 16
Table 1.6:COM2 RS-232/422/485 mode selector ........16
Table 1.5: H/W monitor alarm (JOBS1)....................... 16
1.9 System Memory .............................................................. 18
1.10 Memory Installation Procedures ..................................... 19
1.11 Cache Memory................................................................ 19
1.12 Processor Installation .......................... 19
Chapter 2 Connecting Peripherals .................................22
2.1 Introduction..................................................................... 22
2.2 Floppy Drive Connector (FDD1).................................... 23
2.3 Parallel Port (LPT1)........................................................ 24
2.4 USB Ports (USB12, USB34, USB56, USB78)............... 25
2.5 VGA Connector (VGA1) ................................................ 26
2.6 Serial Ports (COM1, COM2, COM3-4 & COM5-6) ...... 27

PCE-5124 User Manual x
2.7 PS/2 Keyboard and Mouse Connector (KBMS1)........... 29
2.8 CPU Fan Connector (CPUFAN1)................................... 30
2.9 Front Panel Connectors (JFP1, JFP2 & JFP3) ................ 31
2.9.1 Power LED and keyboard lock (JFP3)......................... 31
Table 2.1:PS/2 or ATX power supply LED status........ 32
2.9.2 External speaker (JFP2)................................................ 32
2.9.3 Reset connector (JFP1)................................................. 32
2.9.4 HDD LED connector (JFP2)......................................... 32
2.9.5 ATX soft power switch (JFP1)..................................... 32
2.10 H/W Monitor Alarm (JOBS1)......................................... 33
2.11 LAN Ports (LAN1 & LAN2).......................................... 34
Table 2.2:LAN LED indicator...................................... 34
2.12 High Definition Audio Module Interface........................ 35
2.13 GPIO Header (GPIO1).................................................... 36
2.14 Case Open Connector (JCASE1) .................................... 37
2.15 Front Panel LAN Indicator Connector (LANLED1) ...... 38
Table 2.3:Front Panel LAN Indicator Connector .........38
2.16 Serial ATA Interface (SATA1~SATA6) ........................ 39
Chapter 3 AMI BIOS Setup............................................42
Figure 3.1:Setup program initial screen........................ 42
3.1 Entering Setup................................................................. 43
Figure 3.2:Press Del to run Setup................................. 43
3.2 Main Setup ...................................................................... 44
Figure 3.3:Main setup screen........................................ 44
3.2.1 System time / System date............................................44
3.3 Advanced BIOS Features Setup...................................... 45
Figure 3.4:Advanced BIOS features setup screen ........ 45
3.3.1 CPU configuration........................................................ 46
Figure 3.5:CPU configuration setting........................... 46
3.3.2 IDE configuration......................................................... 48
Figure 3.6:IDE configuration........................................ 48
3.3.3 Super I/O configuration ................................................49
Figure 3.7:Super I/O configuration...............................49
3.3.4 Hardware health function..............................................51
Figure 3.8:Hardware health configuration.................... 51
3.3.5 APM configuration ....................................................... 52
Figure 3.9:APM configuration...................................... 52
Figure 3.10:Configure remote access type and parameters
................................................................... 53
3.4 PCI/PNP Setup................................................................ 54
Figure 3.11:PCI/PNP setup........................................... 54
3.4.1 Clear NVRAM.............................................................. 54
3.4.2 Plug and play O/S.........................................................54
3.4.3 PCI latency timer.......................................................... 55