Agilent Technologies 1260 Infinity II User manual

Agilent Technologies
Agilent InfinityLab LC Series
1260 Infinity II Binary Pump
User Manual

InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
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© Agilent Technologies, Inc. 2016-2018
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Manual Part Number
G7112-90000 Rev. B
Edition
08/2018
Printed in Germany
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InfinityLab LC Series 1260 Infinity II Binary Pump User Manual 3
In This Guide...
In This Guide...
This manual covers the Agilent InfinityLab LC Series 1260 Infinity II Binary
Pump (G7112B).
1Introduction
This chapter gives an introduction to the module and an instrument overview.
2 Site Requirements and Specifications
This chapter provides information about site requirements and specifications
for the binary pump.
3UsingthePump
This chapter explains the operational parameters of the Binary Pump.
4 Optimizing Performance
This chapter gives information on how to optimize the performance of the
Binary Pump under special operational conditions.
5 Troubleshooting and Diagnostics
Overview of the troubleshooting and diagnostic features.
6 Error Information
This chapter describes the meaning of error messages, and provides
information on probable causes and suggested actions how to recover from
error conditions.
7 Test Functions and Calibration
This chapter explains all test functions that are available for the binary pump.
8 Maintenance
This chapter describes the maintenance of the module.

4 InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
In This Guide...
9 Parts and Materials for Maintenance
This chapter lists all parts and tools that are required for maintenance and
simple repairs.
10 Identifying Cables
This chapter provides information on cables used with the Agilent InfinityLab
LC Series modules.
11 Hardware Information
This chapter provides detailed technical information about your binary pump.
12 LAN Configuration
This chapter provides information on connecting the module to the Agilent
ChemStation PC.
13 Appendix
This chapter provides addition information on safety, legal and web.

InfinityLab LC Series 1260 Infinity II Binary Pump User Manual 5
Contents
Contents
1Introduction 9
Instrument and Operation 10
Overview of the Hydraulic Path 15
Leak and Waste Handling 20
2 Site Requirements and Specifications 25
Site Requirements 26
Physical Specifications 29
Performance Specifications 30
3UsingthePump 33
Magnets 34
Turn on/off 35
Status Indicators 37
Best Practices 38
Leak and Waste Handling 40
Hints for Successful Use of the Binary Pump 41
Setting up the Pump with the G4208A Instant Pilot 42
Setting up the Pump with the Instrument Control Interface 43
Solvent Information 48
Algae Growth in HPLC Systems 54
Prevent Blocking of Solvent Filters 55
Normal Phase Applications 57
4 Optimizing Performance 59
When to Use a Vacuum Degasser 60
When to Use the Active Seal Wash Option 61
When to Use the Low Volume Mixer 62
When to Remove Damper and Mixer 63
How to Optimize the Compressibility Compensation Setting 66

6 InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
Contents
5 Troubleshooting and Diagnostics 69
Overview of the Module’s Indicators and Test Functions 70
User Interfaces 72
Agilent Lab Advisor Software 73
6 Error Information 75
What Are Error Messages 77
General Error Messages 78
Module Error Messages 84
7 Test Functions and Calibration 95
(System) Pressure Test 96
Valve Test 101
Binary Pump Solvent Compressibility Calibration 103
Pump Elasticity Calibration 105
Pump Leak Rate Test 107
8 Maintenance 111
Introduction to Maintenance 112
Cautions and Warnings 113
Cleaning the Module 115
Overview of Maintenance and Simple Repairs 116
Maintenance Procedures 117
Remove and Install Doors 118
Exchange the Purge Valve Frit or the Purge Valve 120
Replace the O-Ring on the Purge Valve 123
Remove the Pump Head Assembly 125
Maintenance of a Pump Head without Seal Wash 127
Maintenance of a Pump Head with Seal Wash 130
Reinstall the Pump Head Assembly 134
Seal Wear-in Procedure 136
Exchange the Active Inlet Valve (AIV) or its Cartridge 137
Exchange the Seal Wash Cartridge 140
Replace Leak Handling System Parts 142
Exchange the Outlet Valve 144
Installation of the Solvent Selection Valve Upgrade Kit 146
Exchange the Solvent Selection Valve 148
Replacing Module Firmware 151

InfinityLab LC Series 1260 Infinity II Binary Pump User Manual 7
Contents
9 Parts and Materials for Maintenance 153
Hydraulic Path with Solvent Selection Valve 154
Hydraulic Path without Solvent Selection Valve 156
Pump Head Assembly Without Seal Wash 158
Pump Head Assembly with Seal Wash Option 160
Outlet Valve 162
Purge Valve Assembly 163
Active Inlet Valve Assembly 164
HPLC System Tool Kit 165
Active Seal Wash Option 166
Solvent Cabinet 167
Bottle Head Assembly 168
Cover Parts 169
Accessory Kit 170
10 Identifying Cables 171
Cable Overview 172
Analog Cables 174
Remote Cables 176
CAN/LAN Cables 180
RS-232 Cable Kit 181
Agilent 1200 Module to Printer 182
11 Hardware Information 183
Firmware Description 184
Electrical Connections 187
Interfaces 189
Setting the 6-bit Configuration Switch 197
Early Maintenance Feedback 201
Instrument Layout 202
12 LAN Configuration 203
What You Have to Do First 204
TCP/IP parameter configuration 205
Configuration Switches 206
Initialization Mode Selection 207
Dynamic Host Configuration Protocol (DHCP) 209
Manual Configuration 212

8 InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
Contents
13 Appendix 217
General Safety Information 218
Waste Electrical and Electronic Equipment (WEE) Directive 224
Radio Interference 225
Sound Emission 226
Agilent Technologies on the Internet 227

9
InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
Agilent Technologies
1
Introduction
Instrument and Operation 10
Introduction to the Pump 10
Principle of Operation 11
Product Description 14
Features 14
Overview of the Hydraulic Path 15
Leak and Waste Handling 20
Leak Sensor 23
Waste Concept 24
This chapter gives an introduction to the module and an instrument overview.

10 InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
1 Introduction
Instrument and Operation
Instrument and Operation
Introduction to the Pump
The binary pump comprises two identical pumps integrated into one housing.
Binary gradients are created by high-pressure mixing. A built-in degasser is
available for applications that require best flow stability, especially at low flow
rates, for maximum detector sensitivity. Pulse damper and mixer can be
bypassed for low flowrate applications or whenever a minimal transient
volume is desirable. Typical applications are high throughput methods with
fast gradients on high resolution 2.1 mm columns. The pump is capable of
delivering flow in the range of 0.1 – 5 mL/min against up to 600 bar. A solvent
selection valve (optional) allows to form binary mixtures (isocratic or
gradient) from one of two solvents per channel. Active seal wash (optional) is
available for use with concentrated buffer solutions.
Figure 1 Overview of the binary pump

InfinityLab LC Series 1260 Infinity II Binary Pump User Manual 11
Introduction
1
Instrument and Operation
Principle of Operation
The binary pump is based on a two-channel, dual-piston in-series design
which comprises all essential functions that a solvent delivery system has to
fulfill. Metering of solvent and delivery to the high-pressure side are
performed by two pump assemblies which can generate pressure up to
600 bar.
Each channel comprises a pump assembly including pump drive, pump head,
active inlet valve with replaceable cartridge, and outlet valve. The two
channels are fed into a low-volume mixing chamber which is connected via a
restriction capillary coil to a damping unit and a mixer. A pressure sensor
monitors the pump pressure. A purge valve with integrated PTFE frit is fitted
to the pump outlet for convenient priming of the pumping system.

12 InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
1 Introduction
Instrument and Operation
Figure 2 The hydraulic path of the Binary Pump with damper and mixer
Damper and mixer can be bypassed for lowest delay volume of the binary
pump. This configuration is recommended for low flow rate applications with
steep gradients.
Figure 3 on page 13 illustrates the flow path in low delay volume mode. For
instructions on how to change between the two configurations, see “Convert
the Binary Pump to Low Delay Volume Mode” on page 64.
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Bypassing the mixer while the damper remains in line is not a supported configuration and
may lead to undesired behavior of the binary pump.

InfinityLab LC Series 1260 Infinity II Binary Pump User Manual 13
Introduction
1
Instrument and Operation
Figure 3 The hydraulic path of the Binary Pump with bypassed damper and mixer
For pump specifications, see “Performance Specifications” on page 30.
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14 InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
1 Introduction
Instrument and Operation
Product Description
The Agilent 1260 Infinity II Binary Pump is suited for LC applications using
conventional or superficially porous particles columns, as well as STM column
technology. Gradient formation is based on a high-pressure mixing principle.
Standard or low delay volumes can be easily configured by the user. The
Agilent 1260 Infinity II Binary Pump offers reproducible gradients and
high-performance, providing high-throughput and fast separations. The pump
is suitable for routine applications, with UV or MS detection, where high speed
and resolution with uncompromised data quality are required.
Figure 4 Overview of the pump
Features
•Configurable delay volume - down to 120 L together with a flow range up
to 5 mL/min provides universal applicability.
•Change from standard to low delay volume configuration is enabled.
•High gradient performance - even at low % B and narrow-bore flow rates.
•Integrated 2-channel-degasser.
•Fast and precise gradients using LC/MS, as well as UV-only systems.
•Fully exploits the speed and separation potential of Poroshell.
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InfinityLab LC Series 1260 Infinity II Binary Pump User Manual 15
Introduction
1
Overview of the Hydraulic Path
Overview of the Hydraulic Path
The solvent from the bottle in the solvent cabinet enters the pump through an
active inlet valve. Each side of the binary pump comprises two substantially
identical pump units. Both pump units comprise a ball-screw drive and a
pump head with two sapphire pistons for reciprocating movement.
Figure 5 Pump head
A servo-controlled variable reluctance motor drives the two ball-screw drives
in opposite directions. The gears for the ball-screw drives have different
circumferences (ratio 2:1) allowing the first piston to move at double the speed
of the second piston. The solvent enters the pump heads close to the bottom
limit and leaves it at its top. The outer diameter of the piston is smaller than
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GHJDVVHU669

16 InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
1 Introduction
Overview of the Hydraulic Path
the inner diameter of the pump-head chamber allowing the solvent to fill the
gap in between. The first piston has a stroke volume in the range of 20 L to
100 L depending on the flow rate. The microprocessor controls all flow rates
in a range of 1 L/min to 5 mL/min. The inlet of the first pumping unit is
connected to the active inlet valve which is processor-controlled opened or
closed allowing solvent to be drawn into the first pump unit.
The outlet of the first pump chamber is connected by a 500 L absorber
capillary to the second pump chamber. The outlets of the second chambers of
both pump channels joined via a small mixing chamber. A coiled restriction
capillary connects the mixing chamber via a pressure pulse damper, a mixer
and a pressure sensor to the purge valve assembly. The outlet of the purge
valve assembly is then connected to the attached chromatographic system.
When turned on, the pump runs through an initialization procedure to
determine the upper dead center of the first piston of both pump channels.
The first piston moves slowly upwards to the mechanical stop of the pump
head and from there it moves back a predetermined path length. The
controller stores this piston position in memory. After this initialization the
pump starts operation with the set parameters for the two pump channels.
The active inlet valve is opened and the down moving piston draws solvent
into the first pump head. At the same time the second piston is moving
upwards delivering into the system. After a controller defined stroke length
(depending on the flow rate) the drive motors are stopped and the active inlet
valve is closed. The motor direction is reversed and moves the first piston up
until it reaches the stored upper limit and at the same time moving the second
piston downwards.
Then the sequence starts again moving the pistons up and down between the
two limits. During the delivery stroke of the first piston the solvent in the
pump head is pressed through the outlet valve into the second pumping unit.
The second piston draws in half of the volume displaced by the first piston and
the remaining half volume is directly delivered into the system. During the
drawing stroke of the first piston, the second piston delivers the drawn
volume into the system.
For pump specifications, see “Performance Specifications” on page 30.

InfinityLab LC Series 1260 Infinity II Binary Pump User Manual 17
Introduction
1
Overview of the Hydraulic Path
What is Pump Elasticity Compensation?
The flow path of the pump consists of pump chambers, sapphire pistons,
polymer seals, stainless steel tubing of different dimension, pressure sensor,
and so forth. All of these parts deform when pressurized. The sum of this
deformation is called pump elasticity.
Let us look at a practical example: Piston 1 draws solvent at ambient pressure.
The movement direction is reversed and the piston 1 now compresses the
solvent until the operating pressure of the HPLC system is reached. The outlet
valve opens, and solvent is pumped by piston 1 into pump chamber 2. Due to
two factors, the solvent volume that is delivered into the system at high
pressure is smaller than it is supposed to be:
1The solvent is compressible
2The pump has a certain elasticity which causes its internal volume to
increase with pressure.
In order to compensate for these two influences, their contributions must be
known. An elasticity calibration allows separating pump properties from
solvent properties and therefore allows transferring solvent properties, which
have been obtained from one pump to another pump with different elasticity.
Elasticity calibration is done with a solvent, which properties (compressibility,
thermal expansion) are well-known and documented: pure water. When
pumping water and using its property data for controlling the pump, any
deviations from the theoretical pressure profile during solvent recompression
are caused by the elasticity of the pump.
The Pump Elasticity Calibration calculates correction factors to compensate
for the individual elasticity of the pump that is being calibrated. The elasticity
is different for every pump and may change with the replacement of parts in
the flow path, e.g. pump seals.
All binary pumps are elasticity calibrated at the factory and require recalibration
only after preventive maintenance or major repairs to the flow path. Replacement
of capillaries or PTFE frits are not considered as a major repair.
CAUTION
Incorrect pump elasticity calibration.
Solvent compressibility calibrations acquired with a miscalibrated pump will work, but
they are not transferable to other pumps. A correct pump elasticity calibration is an
essential prerequisite for successful solvent compressibility calibrations.
➔Calibrate the pump elasticity correctly.

18 InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
1 Introduction
Overview of the Hydraulic Path
What is Solvent Compressibility Compensation?
Although the compressibility of liquids is orders of magnitude lower than the
compressibility of gases, without correction a noticeable volume error would
be seen if typical chromatographic solvents are compressed to operating
pressures as high as 600 bar. In addition, the compressibility depends on
pressure, temperature and the amount of dissolved gas. In order to minimize
the influence of the latter, the use of a vacuum degasser is mandatory for a
high flow and composition precision. Unfortunately, the influence of the
temperature on compressibility is non-linear and cannot be calculated.
The Agilent 1260 Infinity II Binary Pump features a multi point
compressibility calibration. The compressibility of a solvent is determined at
different pressures from 0 – 600 bar and stored in an XML file. This file can be
distributed to other pumps because the solvent compressibility is independent
from the pump.
The binary pump and ChemStation come with predetermined solvent
compressibility data for the most common HPLC solvents like water,
acetonitrile, methanol, etc. Users can calibrate their own solvent mixtures
with the help of an easy to use calibration procedure in the Agilent Lab
Advisor software.
Let us use the practical example from the last section once again to
understand how compressibility compensation works:
Piston 1 draws solvent at ambient pressure. The movement direction is
reversed and piston 1 now compresses the solvent until the operating pressure
of the HPLC system is reached. The outlet valve opens, and solvent is pumped
by piston 1 into pump chamber 2.
Without any compensation, the delivered volume at operating pressure would
be too low. In addition, it would take a noticeable amount of time to
recompress the solvent to operating pressure. During this time frame, no
solvent would be delivered into the system and as a result a high pressure
fluctuation (known as pressure ripple) would be observed.
When both solvent compressibility at the current operating pressure and
pump elasticity are known, the pump can automatically correct for the missing
volume by drawing the appropriate larger solvent volume at ambient pressure
and speed up the piston during the recompression phase in the first pump
chamber. As a result, the pump delivers the accurate volume with any
(calibrated) solvent at any pressure at a greatly reduced pressure ripple.

InfinityLab LC Series 1260 Infinity II Binary Pump User Manual 19
Introduction
1
Overview of the Hydraulic Path
For applications that require lowest transition volume of the pump, damper
and mixer can be bypassed.
For compatibility with older methods from G1312A Binary Pumps, the
previous one-point compressibility compensation is available, too. However,
since the compressibility is a non-linear function, one single compressibility
value per solvent will only give good results at one particular pressure.
How Does Variable Stroke Volume Work?
The smaller the solvent volume in the pump chamber is, the faster it can be
recompressed to operating pressure. The binary pump allows to manually or
automatically adjust the pump stroke volume of the first piston in the range of
20 – 100 L. Due to the compression of the solvent volume in the first pump
chamber, each piston stroke of the pump will generate a small pressure
pulsation, influencing the flow ripple of the pump. The amplitude of the
pressure pulsation mainly depends on the stroke volume and the
compressibility compensation for the solvent in use. Small stroke volumes
generate less pressure pulsation than larger stroke volumes at the same flow
rate. In addition, the frequency of the pressure pulsation will be higher. This
will decrease the influence of flow pulsations on retention times.
In gradient mode, a smaller stroke volume results in less flow ripple and
reduces the composition ripple.
The binary pump uses a processor-controlled ball screw system for driving its
pistons. The normal stroke volume is optimized for the selected flow rate.
Small flow rates use a small stroke volume while higher flow rates use a higher
stroke volume.
The stroke volume for the pump is by default set to AUTO mode. This means
that the stroke is optimized for the flow rate in use. A change to larger stroke
volumes is possible but not recommended.

20 InfinityLab LC Series 1260 Infinity II Binary Pump User Manual
1 Introduction
Leak and Waste Handling
Leak and Waste Handling
The Agilent InfinityLab LC Series has been designed for safe leak and waste
handling. It is important that all security concepts are understood and
instructions are carefully followed.
The solvent cabinet is designed to store a maximum volume of 8 L solvent. The
maximum volume for an individual bottle stored in the solvent cabinet should
not exceed 2 L. For details, see the usage guideline for the Agilent Infinity II
Solvent Cabinets (a printed copy of the guideline has been shipped with the
solvent cabinet, electronic copies are available on the Internet).
All leak plane outlets are situated in a consistent position so that all Infinity
and Infinity II modules can be stacked on top of each other. Waste tubes are
guided through a channel on the right hand side of the instrument, keeping the
front access clear from tubes.
The leak plane provides leak management by catching all internal liquid leaks,
guiding them to the leak sensor for leak detection, and passing them on to the
next module below, if the leak sensor fails. The leak sensor in the leak plane
stops the running system as soon as the leak detection level is reached.
Solvent and condensate is guided through the waste channel into the waste
container:
•from the detector's flow cell outlet
•from the Multisampler needle wash port
•from the Sample Cooler or Sample Thermostat (condensate)
•from the pump's Seal Wash Sensor (if applicable)
•from the pump's Purge Valve or Multipurpose Valve